BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20800.1
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479606 jgi|Araly1|479606|fgenesh2_kg.3__2307__AT3G20800.1 1962 0.0
Ahg479605 jgi|Araly1|479605|fgenesh2_kg.3__2306__AT3G20790.1 172 4e-42
> Ahg479606 jgi|Araly1|479606|fgenesh2_kg.3__2307__AT3G20800.1
Length=1224
Score = 1962 bits (1062), Expect = 0.0
Identities = 1176/1230 (96%), Gaps = 11/1230 (1%)
Strand=Plus/Plus
Query 40 AACTCTGGAGAATGGCGAATCTACCTTCTTCTCTCTCCATGGGCACACCTTTCGGTGGTC 99
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 AACTCTGGAGAATGGCGAATCTACCTTCATCTCTCTCCATGGGCACACCTTTCGGTGGTC 60
Query 100 CTAGCACCTCCGCACAAAATCCTACCGGAGCTCCGGCCAACAAAGATCGCAATTTGGCCT 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAGCACCTCCGCACAAAATCCTACCGGAGCTCCGGCCAACAAAGATCGCAATTTGGCCT 120
Query 160 CTGCTGAACAGTTGGTACTCGATCTCAGCAATCCTGAACTCAGAGAAAATGCTCTTCTCG 219
||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 121 CTGCTGAGCAGTTGGTACTCGATCTCAGCAATCCCGAACTCAGAGAGAATGCTCTTCTCG 180
Query 220 AGCTTTCCAAGAAAAGAGAATTGTTTCAGGATCTGGCGCCTTTGTTGTGGAACTCTTTTG 279
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 AGCTTTCCAAGAAAAGAGAATTGTTTCAGGATCTGGCGCCTCTGTTGTGGAACTCTTTTG 240
Query 280 GTACCATTGCTGCCTTGTTACAGGAGATTGTATCAATCTACTCTGTTCTTGCACCTCCAA 339
|||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 241 GTACAATTGCTGCTTTGTTGCAGGAGATAGTATCAATCTACTCTGTTCTTGCACCTCCAA 300
Query 340 ATCTGACTCCTGCTCAGTCCAACCGTGTTTGCAACTCGCTCGCTCTTCTTCAGTGCGTAG 399
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 ATCTGACTCCTGCTCAGTCCAACCGTGTTTGCAACTCGCTCGCCCTTCTTCAGTGCGTAG 360
Query 400 CATCTCATTCTGACACGAGAATGTTATTTCTCAAGGCTCATATCCCGTTGTACCTTTATC 459
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 CATCTCATTCTGACACGAGAATGTTATTTCTCAAGGCTCATATCCCATTGTACCTTTATC 420
Query 460 CCTTCCTTAATACAACGAGTAAGTCCAGACCTTTCGAATACTTGCGGCTTACTAGCCTAG 519
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 421 CCTTCCTTAATACAACGAGTAAGTCAAGACCTTTCGAATACTTGCGGCTTACTAGCTTAG 480
Query 520 GTGTCATCGGTGCACTTGTGAAGGTTGATGATACAGAGGTCATTAGCTTCCTTCTTTCAA 579
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 GTGTCATTGGTGCACTTGTGAAGGTTGATGATACAGAGGTCATTAGCTTCCTACTTTCAA 540
Query 580 CTGAAATTATTCCTCTGTGCCTCCGTACCATGGAAATGGGGAGTGAGCTGTCAAAAACAG 639
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTGAAATTATTCCGCTGTGCCTCCGTACCATGGAAATGGGGAGTGAGCTGTCAAAAACAG 600
Query 640 TGGCAACATTTATTGTTCAAAAGATACTGTTGGATGATGTGGGGATGGATTACATCTGCA 699
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 TGGCAACATTTATTGTTCAAAAGATTTTGTTGGATGATGTGGGGATGGATTACATCTGCA 660
Query 700 CAACAGCAGAGCGGTTTTTTGCAGTTGGTCGAGTGTTGGGAAATATGGTTCAGTCACTTG 759
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 661 CAACAGCAGAGCGGTTTTTTGCAGTTGGTCGAGTGTTGGGCAACATGGTTCAGTCACTTG 720
Query 760 TGGAGCAGCCTTCTCCGCGCCTTTTGAAGCATATCATTCGTTGCTATCTCCGTTTATCAG 819
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 TGGAGCAGCCTTCTCCGCGGCTTTTGAAGCATATCATTCGTTGCTATCTCCGTCTATCAG 780
Query 820 ACAACCCAAGGGCTTGTGCTGCACTCGCAAGCTGTCTCCCTGACTCGCTACGAGATGGAT 879
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACAACCCAAGGGCTTGTGCTGCACTCGCAAGCTGTCTCCCTGACTCGCTACGAGATGGAA 840
Query 880 CCTTTAGCAATTGTCTTCGCGAGGATCCAACTGCAAGAAGGTGGCTGCAACAGTTGGTGC 939
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 841 CCTTTAGCAATTGTCTTCGCGAGGATCCAACTGCAAGGAGGTGGCTGCAACAGTTGGTTC 900
Query 940 ACAATGTTGGAGTTGGTCGCGTCCCAACACATCAAGGTGGAGGATTTGAGCACATGCTTT 999
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATAATGTTGGAGTTGGTCGAGTCCCAACACATCAAGGTGGAGGATTTGAGCACATGCTTT 960
Query 1000 GAGCTGAATCCATCTCAAACCCATCCATGGAGTGTGTTTCTTCTGTTTTTGTTTCTAATT 1059
|||||||||| |||||| |||||||||||||| | || |||||| ||||||||||||||
Sbjct 961 GAGCTGAATCTATCTCAG-CCCATCCATGGAGTAT-TT-CTTCTGGTTTTGTTTCTAATT 1017
Query 1060 -ATACATGTGCTTTTTAATGCCTTAACTTA--GATGATGGGTTATAGGCTTTTTAGTCTG 1116
|| |||||||||| | |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1018 TATTTATGTGCTTTTGA-TGCCTTAACTTAAAGATGATGGGTTATAGGCTTTTTAGTCTG 1076
Query 1117 TTTGAAATTCTTATTGTAATTATTTTTAAGCTCTAGAACCAATCCCCCAGAATGCATAAG 1176
||||||||||||||||||||||||| |||||| |||||| || |||| ||||||||||||
Sbjct 1077 TTTGAAATTCTTATTGTAATTATTTATAAGCTTTAGAACAAAGCCCCAAGAATGCATAAG 1136
Query 1177 TCTTGGGATAATAAAAGATTGGTTACAAAAGAAATATTATAGAGTTTGTATTATCATGTT 1236
||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct 1137 TCTCGGGATAATAAAAGATTGGTTACAAAAGAAATATTATAGAGTATGTATTTTCA-GTT 1195
Query 1237 -GAA-CGGTAACAATTTTTATTCCAGCAAA 1264
||| || ||||||||||||||||| ||||
Sbjct 1196 TGAAACG-TAACAATTTTTATTCCATCAAA 1224
> Ahg479605 jgi|Araly1|479605|fgenesh2_kg.3__2306__AT3G20790.1
Length=1234
Score = 172 bits (93), Expect = 4e-42
Identities = 122/135 (90%), Gaps = 5/135 (4%)
Strand=Plus/Minus
Query 1144 AAGCTCTAGAACCAATCCCCCAGAATGCATAAGTCTTGGGATAATAAAAGATTGGTTACA 1203
||||| |||||| || |||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1234 AAGCTTTAGAACAAAGCCCCAAGAATGCATAAGTCTCGGGATAATAAAAGATTGGTTACA 1175
Query 1204 AAAGAAATATTATAGAGTTTGTATTATCATGTT-GAA-CGGTAACAATTTTTATTCCAGC 1261
|||||||||||||||||| |||||| ||| ||| ||| || ||||||||||||||||| |
Sbjct 1174 AAAGAAATATTATAGAGTATGTATTTTCA-GTTTGAAACG-TAACAATTTTTATTCCATC 1117
Query 1262 AAAAGCTTTAGCGGT 1276
||| |||||||||||
Sbjct 1116 AAA-GCTTTAGCGGT 1103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47691769167
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5