BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20810.2
Length=1665
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479607 jgi|Araly1|479607|fgenesh2_kg.3__2308__AT3G20810.2 2361 0.0
> Ahg479607 jgi|Araly1|479607|fgenesh2_kg.3__2308__AT3G20810.2
Length=1632
Score = 2361 bits (1278), Expect = 0.0
Identities = 1551/1674 (93%), Gaps = 54/1674 (3%)
Strand=Plus/Plus
Query 1 ATCACTTCAAAATATCTTTCTTTCCCTTTCCACTTTTTCGCTTACACTTTCCCCAACTCA 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATCACTTCCTAATATCTTTCTTTCCCTTTCCACTTTTTCGCTTACACTTTCCCCAA--C- 57
Query 61 TCATCACTCTAAAATATCTCCCACCACATACCACTTAACCCGACCCGACCCGACCGGAAA 120
|||||||||||||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 58 TCATCACTCTAAAATATCTCCCACCACATACCACTTAA---GA--CGACCCGACCCGAAA 112
Query 121 ACCCGACCCGATCCATCCCAATGTCAGGAGCTACCACCGCTTCCTCCGGAGACCACAACA 180
||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||
Sbjct 113 ACCCGACCCGATCCATCCCAATGTCTGGAGCTTCCACCGCTTCCTCCGGTGACCACAACA 172
Query 181 ACCTCCGTCTCCCAACTCCGACGCTTGACGCCGAATCGCAAACTCTGCTGCAATCGATTT 240
|| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 173 ACGTCCGTCTCCCAACTCCGACGCTTGACGCCGAATTTCATTCTCTGCTGCAATCGATTT 232
Query 241 CTGCTGAAGGGGGTTACGCTTATGCTCGCATGGCGGTGTTAGCGGTGGCCGGTGACCAAA 300
||||| |||| |||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 233 CTGCTCAAGGCGGTTACGCCTATGCTCGCATGGCGGCGTTAGCGGTGGCCGGTGACCAAA 292
Query 301 GCGCGGCGGAGGCGGCGCGTGATATGGCTTGGGAGCAACTTCACTCTGGTCCGTGGCACT 360
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 293 GTGCGGCGGAGGCGGCGCGTGATATGGCTTGGGAGCAACTTCACTCTGGTCCATGGCACT 352
Query 361 CGGTTCTCCCCGTT-TGGCGCGACGCTTACTCAATGGCTTGTCTCCACGTAGCTAAAATC 419
| ||||||||| || ||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 353 CAGTTCTCCCC-TTGTGGCGCGACGCTTACTCAATGGCTTGTCTCCTCGTCGCTAAAATT 411
Query 420 CATTTCGCCGCCGGCGAGTTTGGTGAGGCGCTTGGTGCGCTTGATATGGGTCTTATCATG 479
|||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 412 CATTTCGCCGACGGCGAGTTTGGTGAAGCGCTTGGTGCGCTTGATATGGGGCTTATCATG 471
Query 480 GGAGGTATGCTTCTCCGCAAGGATCTTCATGATTCTGTTTTGTTGGTCTCCTCTGAAGCT 539
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 472 GGAGGGATGCTTCTCCGCAAGGATCTTCATGATTCTGTTTTATTGGTCTCCTCCGAAGCT 531
Query 540 CGTAAGATGACGAAGAGTCTTGAAGAAGCTTCTGGAGATTTCAAAGGTGAGAGATTGGTC 599
||||||| ||| |||||||||||||||||||||||||| |||| ||||||| |||||||
Sbjct 532 CGTAAGAAGACAAAGAGTCTTGAAGAAGCTTCTGGAGAGTTCATGGGTGAGAAATTGGTC 591
Query 600 CCGGAAGTTCCCGTCGACGTCAATGAGGTGAGACAT-GTTTTGGCTAATCTACAATTACT 658
|||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct 592 CCGGAAGTTCCCGTTGACGTCAATGAGGTGAGACATGGTTTT-GCTAATCTACAAGTACT 650
Query 659 TGTCCTTAAGATTCTACCTTGCAGGTCTTTAACTTGTAAAAGAGTAGAGAAGAGGTCTGG 718
||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 651 TGTGCTTAAGATTCTACCTTGCAGGTCCTTAACTTGTAGAAGAGTAGAGAAGAGGTCTGG 710
Query 719 TTTATCTTTGGAGGGGTTTCTGCGTGATTATTATCTGCCAGGTACACCAGTTGTTATAAC 778
|||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct 711 TTTATCTTTGGAGGGGTTTCTGCGTGATTATTTTCTGTCGGGTACACCAGTTGTTATAAC 770
Query 779 CAATTCTATGGCTCATTGGCCAGCCAGGACCAAGTGGAATCACTTGGACTACCTCAATGC 838
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 771 CAATTCTATGGCTCATTGGCCAGCCAGGGCCAAGTGGAACCACTTGGACTACCTCAATGC 830
Query 839 TGTTGCTGGTAACCGCACCGTTCCCGTGGAGGTGGGGAAAAACTATTTGTGTTCTGATTG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TGTTGCTGGTAACCGCACCGTTCCCGTGGAGGTGGGGAAAAACTATTTGTGTTCTGATTG 890
Query 899 GAAGCAAGAGCTTGTGACATTTTCTAAGTTCCTTGAACGGATGCGGACCAATAAATCGTC 958
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 891 GAAGCAAGAGCTTGTGACATTTTCTAAGTTCCTTGAACGGATTCGGACCAATAAATCGTC 950
Query 959 TCCAATGGAGCCTACTTATCTTGCCCAGCATCCTTTGTTTGATCAGATAAATGAACTGAG 1018
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 951 TCCAATGGAGCCTACCTATCTTGCGCAGCATCCTTTGTTTGATCAGATAAATGAACTGAG 1010
Query 1019 AGATGATATATGTATTCCTGATTACTGTTTTGTCGGTGGTGGGGAACTCCAATCACTTAA 1078
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 AGATGATATATGTATACCTGATTACTGTTTTGTCGGTGGTGGGGAACTCCAATCACTTAA 1070
Query 1079 TGCATGGTTTGGCCCGGCTGGGACAGTTACTCCGTTACACCATGATCCACATCATAATAT 1138
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TGCGTGGTTTGGCCCGGCTGGGACAGTTACTCCGTTACACCATGATCCACATCATAATAT 1130
Query 1139 ACTTGCTCAGGTTGTTGGCAAGAAGTATATAAGGCTTTACCCATCCTTCCTGCAAGACGA 1198
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1131 ACTTGCTCAGGTTGTTGGCAAGAAGTATATAAGGCTTTACCCATCCTCCCTACAAGACGA 1190
Query 1199 ACTTTACCCTTACTCTGAGACAATGCTCTGCAACTCTAGTCAGGTTGATCTAGACAATAT 1258
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1191 ACTTTACCCTTACTCTGAGACAATGCTCTGCAACTCTAGCCAGGTTGATCTAGACAATAT 1250
Query 1259 CGACGAA-ACCGAGTTCCCAAAGGCCATGGAGTTGGAGTTTATGGATTGTATTCTAGAAG 1317
|||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1251 CGAC-AAGACCGAGTTCCCAAAGGCAACGGAGTTGGAGTTTATGGATTGTATTCTAGAAG 1309
Query 1318 AAGGTGAAATGTTGTACATCCCTCCCAAATGGTGGCACTATGTCAGGTCCTTAACAATGA 1377
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 AAGGTGAAATGCTGTACATCCCTCCCAAATGGTGGCACTATGTCAGGTCCTTAACAATGA 1369
Query 1378 GTCTCTCGGTTAGCTTCTGGTGGAGCAATGAAGCAGAATCTTCTAGCTCGTAGCGAATGG 1437
|| ||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| ||
Sbjct 1370 GTTTCTCGGTTAGCTTCTGGTGGAGCAATGAAACAGATTCTTCTAGCTCATAGCGAAAGG 1429
Query 1438 ATTTATTTTTAATCTCTGTTTCAGGTTCTAAGTTCACGTTGTGTCTTTATGTAAGAAGAA 1497
| ||| | |||||||| | | | |||| | | ||| | ||| |||
Sbjct 1430 AGTTACTATTAATCTC----T---G---T---TTCA-G--G-GTC--TGTGT---AAG-- 1465
Query 1498 ACTATGTAGAGAAGAAAACAACTGCTCCGAGCATGAAGATGTTTGTTTGGTTTACGTCTA 1557
| | | | | ||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1466 A--A-G-A-A-AAG-AAACAATTGCTCCGAGCATGAAGATGTTTGTTTGGTTTACGTCTA 1518
Query 1558 TGTTGTAAAAGACAATTGAGAGCTCTT-GGTACAGACATTTTTTAGGTATTG-------G 1609
||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1519 TGTTGTAAAAGACAATTGAGAGCTCTTTGGTACAGACATTTTTTAGGTATTTCATATTTG 1578
Query 1610 TAATGTTTGTCTTTGTTTCAAGTAAGAAAT-GGTTTAATCAAAATCTAATCTTC 1662
||||||||||||||| ||||||||||||| ||||||||||||| ||| |||||
Sbjct 1579 TAATGTTTGTCTTTGCTTCAAGTAAGAAAAAGGTTTAATCAAAAGCTACTCTTC 1632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62429911555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5