BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20820.1
Length=1300
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930029 jgi|Araly1|930029|scaffold_302486.1 1899 0.0
> Ahg930029 jgi|Araly1|930029|scaffold_302486.1
Length=1145
Score = 1899 bits (1028), Expect = 0.0
Identities = 1101/1137 (97%), Gaps = 1/1137 (0%)
Strand=Plus/Plus
Query 35 AAAAAGAATC-TTCAAACAATGAATCTCAACGTCGTCGTTTTACTCCTACTCCTTCTAAT 93
||||| |||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 9 AAAAAAAATCTTTCAAACAATGAATCTCAACGTCGTCGTTTTACTCTTTCTCCTTCTAAT 68
Query 94 CTCATCCGCCACGTGTTGTCCGCCGTCAGACCGCCGTGCACTTCTAGCTTTCCGATCAGC 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 CTCATCCGCCACGTGTTGTCCGCCGTCAGACCGCCGTGCACTTCTAGCTTTCCGATCAGC 128
Query 154 TCTTCACGAGCCTTACCTCGGCATTTTCAACTCATGGACAGGCCAAGACTGTTGCCACAA 213
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 129 TCTTCACGAGCCATACCTCGGCATTTTCAACTCATGGACCGGCCAAGACTGTTGCCACAA 188
Query 214 CTGGTACGGTATTAGCTGCGACTCGCTCACTCACCGAGTCGCCGACATAAATCTCCGCGG 273
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 189 CTGGTACGGTATTAGCTGCGACTCGCTCACTCACCGAGTCGCCGACATAAACCTCCGCGG 248
Query 274 CGAGTCAGAAGATCCAATCTTCGAACGAGCTCACCGAACCGGTTACATGACCGGACACAT 333
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 249 CGAGTCAGAAGATCCAATCTTCGAACGAGCTCATCGAACCGGTTACATGACCGGCCACAT 308
Query 334 CTCCGCCTCGATATGTGAGCTCACTCGTCTCTCCGCCATTACAATCGCCGATTGGAAAGG 393
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 309 CTCCGCCTCGATATGTGACCTCACTCGTCTCTCCGCCATTACCATCGCCGATTGGAAAGG 368
Query 394 TATCTCCGGCGAAATCCCTAAATGTATCACTCGTCTTCCTTTTCTCCGTACACTCGACTT 453
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 369 TATCTCCGGCGAAATCCCTAAATGTATCACTCGTCTCCCTTTTCTCCGTACACTCGACTT 428
Query 454 AATCGGAAACCAAATCTCCGGTGGGATTCCATACGACATCGGAAGATTAAACCGGTTAGC 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 AATCGGAAACCAAATCTCCGGTGGGATTCCATACGACATCGGAAGATTAAACCGGTTAGC 488
Query 514 TGTTTTAAACGTAGCCGATAACCGAATCTCCGGTTCAATTCCAAAATCATTAACCAATCT 573
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 489 TGTTTTAAACGTAGCCGATAACCGAATCTCCGGTTCAATTCCAAAATCGTTAACCAACCT 548
Query 574 CTCTAGCTTAATGCATTTAGATCTCCGTAACAACTTAATCTCCGGTGTAATCCCGTCGGA 633
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 549 CTCTAGCTTAATGCATTTAGATCTCCGTAACAACTTAATCTCCGGGGTAATCCCGTCGGA 608
Query 634 CGTCGGAAGATTAAAAATGCTCAGCCGTGCGTTATTATCCGGTAACCGAATAACCGGTCG 693
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 609 CGTCGGGAGATTAAAAATGCTCAGCCGTGCGTTATTATCCGGTAATCGAATAACCGGTCG 668
Query 694 GATCCCAGAATCATTAACCAATATCTACCGGTTAGCTGACGTGGATCTCTCCGGTAACCA 753
|||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 669 GATCCCTGAATCCTTAACCACTATCTACCGGTTAGCTGACGTGGATCTCTCCGGTAACCA 728
Query 754 ACTCTACGGTACAATCCCACCGTCTCTAGGACGTATGTCGGTACTAGCCACACTTAACCT 813
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 729 ACTCTACGGTACAATCCCACCGTCGCTAGGACGTATGTCGGTTCTAGCCACACTTAACCT 788
Query 814 CGACGGAAACAAAATCTCCGGCGAGATACCTCAAACTCTGATGACGTCGTCGGTGATGAA 873
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 789 CGACGGAAACAAAATCTCCGGAGAGATACCTCAAACTCTGATGACGTCGTCGGTGATGAA 848
Query 874 TCTGAATTTGAGCCGGAACTTGCTACAAGGGAAGATACCTGAAGGGTTTGGACCAAGGTC 933
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 849 TCTGAATTTGAGCCGGAATTTACTACAAGGGAAGATACCGGAAGGGTTTGGACCAAGGTC 908
Query 934 TTACTTCACAGTTCTTGATTTGTCGTATAATAATCTGAAAGGACCAATACCGAGATCGAT 993
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 909 TTACTTCACTGTTCTTGATTTGTCGTATAATAATCTGAAAGGACCAATCCCAAGATCGAT 968
Query 994 CTCAGGTGCGTCGTTTATTGGTCATTTGGATCTTAGCCATAACCATCTCTGTGGGAGGAT 1053
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 CTCTGGTGCGTCGTTTATTGGTCATTTGGATCTTAGCCATAACCATCTCTGTGGGAGGAT 1028
Query 1054 TCCGGTAGGTTCACCGTTTGATCATCTTGAAGCGGCGTCGTTTATGTTTAACGACTGTCT 1113
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 TCCGGTGGGTTCGCCGTTCGATCATCTTGAAGCGGCGTCGTTTATGTTTAACGACTGTCT 1088
Query 1114 TTGTGGTAAACCTTTAAGAGCTTGCTTGAAAAATTGatttttatatgtaatttgagt 1170
|||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1089 TTGTGGTAGACCTTTAAGGGCTTGTTTGAAAAATTGATTTTTATATGTAATTTGAGT 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48606719175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5