BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20830.1
Length=1298
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479611 jgi|Araly1|479611|fgenesh2_kg.3__2312__AT3G20830.1 2008 0.0
Ahg474232 jgi|Araly1|474232|fgenesh2_kg.1__4186__AT1G51170.1 403 1e-111
> Ahg479611 jgi|Araly1|479611|fgenesh2_kg.3__2312__AT3G20830.1
Length=1279
Score = 2008 bits (1087), Expect = 0.0
Identities = 1219/1283 (95%), Gaps = 8/1283 (1%)
Strand=Plus/Plus
Query 1 CTCACACTCAATGGAGCCATCACCGTCGTCCCCACCATCATCACCGCCGGAGATTCTCGA 60
|||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1 CTCACACTCAATGGAGACATTACCATCGTCCCCACCATCATCACCGCCGGAGATTCTCGA 60
Query 61 CCTTGACTCTATCAAAGCTCTCAAAATCCTCGGTAAAGGCGCCACAGGTACCGTCTTCCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTTGACTCTATCAAAGCTCTCAAAATCCTCGGTAAAGGCGCCACAGGTACCGTCTTCCT 120
Query 121 CGCGCACGACGTCGTTTCAACCTCTTCTTCTTCTTCTCCCTTCGCGGTCAAGCTCGTCCC 180
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 CGCACACGACGTCGTTTCAACCTCTTCTTCTTCTTCTCCCTTCGCCGTCAAGCTCGTCCA 180
Query 181 CAAATCCTCTGCTTCCTCTCTCCGCCGTGCACGGTGGGAAATCGAGGTCCTCCGTCGTCT 240
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 CAAATCCTCCGCTTCCTCTCTCCGCCGTGCACGCTGGGAAATCGAGGTCCTCCGTCGTCT 240
Query 241 CTCCGTTGACTCTAATCAAAACCCTTTTCTTCCACGTCTCTTAGCTTCTTTTGAGTCACC 300
|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 241 CTCCGTTGACTCTAATCAAAACCCTTTTCTCCCTCGTCTCTTAGCTTCTTTCGAGTCACC 300
Query 301 GGAATACTTTGCTTGGGCCGTCCCTTATTGTTCCGGCGGTGATCTTAATGTACTTCTTCA 360
|||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 301 CGAATACTTCGCTTGGGCCGTCCCTTATTGTTCCGGTGGTGATCTTAATGTCCTTCTTCA 360
Query 361 TCGTCAAAACGACGGCGTTTTCAGTTCCTCTGTTATTAGATTCTACGTGGCGGAGATCGT 420
|||||||| ||||||||||| || ||||||||||| |||||||||||||| ||||||||
Sbjct 361 CCGTCAAAATGACGGCGTTTTTAGCTCCTCTGTTATAAGATTCTACGTGGCTGAGATCGT 420
Query 421 CTGTGCGCTTGAGCATCTTCATACCATGGGGATCGCTTACAGAGACTTAAAACCAGAGAA 480
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 421 CTGTGCGCTTGAGCATCTTCATACCATGGGGATCGCTTACAGAGACTTGAAACCCGAAAA 480
Query 481 CATTCTGATTCAGCAATCCGGTCACGTTACCTTAACCGATTTTGACCTTTCTCGGAGCCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CATTCTGATTCAGCAATCCGGTCACGTTACCTTAACCGATTTTGACCTTTCTCGGAGCCT 540
Query 541 TAAAAAACCC-CTCCGACCCCATTTCTATCAACCCGACCCGGAATTGATAATCGATCGTa 599
|||||||||| | ||||||||| ||||||||||||||||||||||||| | ||||||||
Sbjct 541 TAAAAAACCCAC-CCGACCCCAATTCTATCAACCCGACCCGGAATTGAGCACCGATCGTA 599
Query 600 aaaaaaGTCGGAGCTTTTCTCGGTTGATCTCGCCGACGGCGGAGAAAAACAAAACAGGGT 659
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 600 AAAAAAGTCGGAGCTTTTCTCGGTTGATCTCGCCGGCGGTGGAGAAAAACAAAACAGGGT 659
Query 660 TGAAGAAAACAAGATCCGCTCGGGTTAACCCAATTAATCGCCGGAAAACGAGTTTCTCCT 719
||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||
Sbjct 660 TGAAGAAAACAAGATCCGCAAGGGTTAACCCGATTAATCGCCGGAAAACGAGCTTCTCCT 719
Query 720 CCGGTGAACGTTCTAACTCATTTGTTGGAACGGACGAGTACGTCTCGCCGGAGGTAATTC 779
|||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 720 CCGGCGAACGTTCTAACTCCTTCGTCGGAACGGACGAGTACGTCTCGCCGGAGGTAATTC 779
Query 780 GCGGCGACGGTCACGACTTCGCCGTCGATTGGTGGGCTCTTGGCGTTTTGACATACGAGA 839
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 780 GCGGCGACGGTCACGACTTCGCTGTAGATTGGTGGGCTCTCGGCGTTTTGACATACGAGA 839
Query 840 TGATGTATGGAGAGACGCCGTTCAA-GGGTAAGAGCAAGAAGGAGACTTTTCGTAACGTG 898
||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 840 TGATGTACGGAGAAACGCCGTTCAAAGGG-AAGAGCAAGAAGGAGACTTTTCGTAACGTG 898
Query 899 TTGATGAAGGAACCCGAGTTCGCCGGAAAACCCAACGACCTCACTGATTTGATCCGGCGG 958
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 899 TTGATGAAGGAACCCGAGTTCGCTGGAAAACCCAACGACCTCACTGATTTGATCCGGCGG 958
Query 959 TTACTGGTGAAGGATCCGAATAGAAGGTTAGGTTGCCACCGTGGCGCGGCGGAGATAAAA 1018
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 959 TTACTGGTGAAGGATCCGAATAGACGGTTAGGTTGCCACCGTGGCGCGGCGGAGATAAAG 1018
Query 1019 GAGCTCGCTTTTTTC-GCGGGTGTGAGGTGGGATTTGTTAACGGAGGTGTTACGACCTCC 1077
|||| |||||||||| | || |||||| ||||||||||||||||||||| ||||||| ||
Sbjct 1019 GAGCACGCTTTTTTCAGTGG-TGTGAGATGGGATTTGTTAACGGAGGTGGTACGACCGCC 1077
Query 1078 GTTTATTCCGTTAAGAGATGACGGAGAGTTAACGGTAGGTGGGTTTGATATAAGGGAACA 1137
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1078 GTTTATTCCGTTAAGAGATGACGGAGAATTAACGGTAGGTGGGTTTGATTTAAGGGAACA 1137
Query 1138 TTTTGAGAAACTGAGGACGACGCCATCATCAGCTCCTCCGTCACCGTTAC-GTTCTCCGC 1196
||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct 1138 TTTTGAGAAACTGAGGACGACTCCATCATCAGCTCCTCCGTCACCGTTACAGT-CTCCGC 1196
Query 1197 CGCACGTGTGTCGTAAAAACGATCCGTTTATTGAATTCTAATCCACGTGTGGGGAATCTA 1256
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1197 CGCACGTGTGTCGTAAAAACGATCCGTTTATTGATTTCTAATCCACGTGTGGGGAATCTA 1256
Query 1257 ACACGTACAAAGTTGTAGAGAAA 1279
||||||||||||||||||| |||
Sbjct 1257 ACACGTACAAAGTTGTAGATAAA 1279
> Ahg474232 jgi|Araly1|474232|fgenesh2_kg.1__4186__AT1G51170.1
Length=1363
Score = 403 bits (218), Expect = 1e-111
Identities = 384/462 (83%), Gaps = 20/462 (4%)
Strand=Plus/Plus
Query 661 GAAGAAAAC-AAGATCCGCTCGGGTTAACCCAATTA-ATCGCCGGAAAAC-GAGTTTCTC 717
|||||| || || ||| ||||| |||||||| |||| | || ||| | || |||||| ||
Sbjct 684 GAAGAAGACGAA-ATCAGCTCGTGTTAACCCGATTACA-CGACGG-AGACTGAGTTTTTC 740
Query 718 CTCCGGTGAACGTTCTAACTCATTTGTTGGAACGGACGAGTACGTCTCGCCGGAGGTAAT 777
| ||||||||| || || || || || ||||| || ||||| | ||||||||||||||
Sbjct 741 CGGCGGTGAACGGTCGAATTCCTTCGTCGGAACTGATGAGTATATATCGCCGGAGGTAAT 800
Query 778 TCGCGGCGACGGTCACGACTTCGCCGTCGATTGGTGGGCTCTTGGCGTTTTGACATACGA 837
|||||||||||||||||| || |||||||||||||||||||| || ||||| || |||||
Sbjct 801 TCGCGGCGACGGTCACGATTTTGCCGTCGATTGGTGGGCTCTCGGAGTTTTAACGTACGA 860
Query 838 GATGATGTATGGAGAGACGCCGTTCAAGGGTAAGAGC-AAGAAGGAGACTTTTCGTAACG 896
||||||||| |||||||| |||||||| || |||| | || || || |||||||||||||
Sbjct 861 GATGATGTACGGAGAGACACCGTTCAAAGG-AAGAACCAAAAAAGAAACTTTTCGTAACG 919
Query 897 TGTTGATGAAGGAACCCGAGTTCGCCGGAAAACCCAACG-ACCTCACTGATTTGATCCGG 955
|||||||||||||||| || ||||| |||||||| || | | || |||||||||||
Sbjct 920 TGTTGATGAAGGAACCTGAATTCGCAGGAAAACCGT-CGGATTTAACCGATTTGATCCGT 978
Query 956 CGG-TTACTGGTGAAGGATCCGAATAGAAG-G-TTAGGTTGCCACCGTGGCGCGGCGGAG 1012
|| ||| ||||||| ||||||| |||| | ||||||| || || ||||||||||||
Sbjct 979 -GGATTATTGGTGAAAGATCCGAC--GAAGCGGTTAGGTTACCGGCGAGGCGCGGCGGAG 1035
Query 1013 ATAAAAGAGC-TCGCTTTTTTC-GCGGGTGTGAGGTGGGATTTGTTAACGGAGGTGTTAC 1070
||||| |||| | ||||||||| | ||| |||||||||||||| |||||||| ||||||
Sbjct 1036 ATAAAGGAGCAT-GCTTTTTTCAGGGGG-GTGAGGTGGGATTTCTTAACGGAAGTGTTAA 1093
Query 1071 GACCTCCGTTTATTCCGTTAAGAGATGACGGAGAGTTAACGG 1112
||||||||||||||||||| |||||||||||||| || ||||
Sbjct 1094 GACCTCCGTTTATTCCGTTGAGAGATGACGGAGAATTGACGG 1135
Score = 390 bits (211), Expect = 1e-107
Identities = 421/521 (81%), Gaps = 20/521 (4%)
Strand=Plus/Plus
Query 72 TCAAAGCTCTCAAAA-TCCTCGGTAAAGGCGCCACAGGTACCGTCTTCCTCG-CGCACGA 129
|||||| ||| |||| ||||||| ||||| ||||| || || |||||||||| | |||||
Sbjct 110 TCAAAGTTCT-AAAACTCCTCGGAAAAGGAGCCACCGGAACTGTCTTCCTCGTC-CACGA 167
Query 130 CGTC-GTTT-CAACCTCTTCT-TCTTCTTCTCCCTTCGCGGTCAAGCTCGTCCCCAAATC 186
| || |||| | | ||| ||| | ||||||||||||||| | || |||||| ||||||
Sbjct 168 C-TCTGTTTCCGA-CTCCTCTGT-TTCTTCTCCCTTCGCTTTAAAACTCGTCGACAAATC 224
Query 187 CTCTGCTTCCTCTCTCCGCCGTGCACGGTGGGAAA-TCGAGGTCCTCCGTCGTCTCTCCG 245
|||||| || ||||||||||||||||||||||||| || || ||||||| ||||||||||
Sbjct 225 CTCTGCCTCTTCTCTCCGCCGTGCACGGTGGGAAATTC-AGATCCTCCGACGTCTCTCCG 283
Query 246 TTGACTCTAATCAAAACCCTTTTCTTCCACGTCTCTTAGCTTCTTTTGAGTCAC-CGGAA 304
|||| | || |||||||| ||||| ||| ||||||||||| | || || | | |||
Sbjct 284 ATGACACAAACCAAAACCCATTTCTCCCAAAACTCTTAGCTTCCTCAGAATC-CTCTGAA 342
Query 305 TACTTTGCTTGGGCCGTCCCTTATTGTTCCGGCGGTGATCTT-AATGTACTTCTTCATCG 363
| | | |||||||| | ||||| || |||||||| ||| || || || || | ||| ||
Sbjct 343 TTCATCGCTTGGGCTTTACCTTACTGCTCCGGCGGCGAT-TTAAACGTCCTCCGTCACCG 401
Query 364 TCAAAACGACGGCGTTTTCAGTTCCTCTGTTATTAGATTCTACGTGGCGGAGATCGTCTG 423
|||||||||||||||||| || ||||| ||||| | ||||||| | || || ||||||||
Sbjct 402 TCAAAACGACGGCGTTTTTAGCTCCTCCGTTATGAAATTCTACTTAGCTGAAATCGTCTG 461
Query 424 TGCGCTTGAGCATCTTCATACCATGGGGATCGCTTACAGAGACTTAAAACCAGAGAACAT 483
||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 462 TGCGCTTGACCACCTTCATACCATGGGGATCGCTTACAGAGACTTGAAACCTGAGAATAT 521
Query 484 TCTGATTCA-GCAATCCGGTCACGTTACCTTAACCGATTTTGACCTTTCTCGGAGCCTTA 542
|| |||| | |||| |||||||| || |||||||||||||| || || | || || |
Sbjct 522 ACTTCTTCAAG-AATCGGGTCACGTGACTTTAACCGATTTTGATCTCGCTTGTAGTCTCA 580
Query 543 AAAAACCC-CTCCGACCCCATTTCTATCAACCCGACCCGGA 582
|||||| | ||||||| |||| |||| | |||||| |||
Sbjct 581 GTAAACCCAC-CCGACCCGATTTTTATCTATCCGACCTGGA 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48530473341
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5