BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20840.1
Length=2137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930033 jgi|Araly1|930033|scaffold_302490.1 2898 0.0
Ahg923594 jgi|Araly1|923594|scaffold_104875.1 767 0.0
> Ahg930033 jgi|Araly1|930033|scaffold_302490.1
Length=1766
Score = 2898 bits (1569), Expect = 0.0
Identities = 1696/1758 (96%), Gaps = 5/1758 (0%)
Strand=Plus/Plus
Query 70 TTTGACTCAAAAAGAAGAAAATGAATTCTAACAACTGGCTTGGCTTTCCTCTTTCACCGA 129
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 TTTGACTCAAAAAGAAGAAAATGAATTCTAACAACTGGCTTGGCTTTCCTCTTTCACCAA 60
Query 130 ACAACTCTTCTTTGCCTCCTCATGAATACAACCTTGGCTTGGTCAGCGACCATATGGACA 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACAACTCTTCTTTGCCTCCTCATGAATACAACCTTGGCTTGGTCAGCGACCATATGGACA 120
Query 190 ACCCTTTTCAAACACAAGAGTGGAATATGATCAATCCACACGGTGGAGGAGGAGATGAAG 249
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 ACCCTTTTCAAACACAAGAGTGGAATATGATCAATCCACACGGTGGAGGAGGAGGTGAAG 180
Query 250 GAGGAGAGGTTCCAAAAGTGGCCGATTTTCTCGGTGTGAGCAAACCGGACGAAAACCAAT 309
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 GAGGAGAGGTTCCAAAAGTGGCCGATTTTCTTGGTGTGAGCAAACCGGACGAAAACCAAT 240
Query 310 CCAACCACCTAGTAGCTTACAACGACTCAGACTACTACTTCCATACCAATAGCTTGATGC 369
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 CCAACCACCTAGTAGCTTACAACGACTCAGATTACTACTTCCATACCAATAGCTTGATGC 300
Query 370 CTAGCGTCCAATCAAACGATGTCGTTGTAGCAGCTTGTGACTCCAATACTCCTAACAACA 429
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 CTACCGTCCAATCAAACGATGTCGTTGTAGCAGCTTGTGACTCCAACACTCCTAACAACA 360
Query 430 GTAGCTATCATGAGCTTCAAGAGAGTGCTCACAATCTACAGTCACTTACTTTGTCCATGG 489
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 GTAGCTATCATGAGCTTCAAGAGAGTGCTCACAATCTACAGTCACTCACTTTGTCCATGG 420
Query 490 GGACCACCGCTGGTAATAATGTTGTAGACAAAGCTTCACCATCCGAGACCACCGGGGATA 549
|||||||||||||||| || | |||||||||||||||||| |||||||||||||||||||
Sbjct 421 GGACCACCGCTGGTAACAACGCTGTAGACAAAGCTTCACCGTCCGAGACCACCGGGGATA 480
Query 550 ACGCTAGCGGTGGAGCACTAGCCGTTGTTGAGACGGCCACGCCAAGACGTGCATTGGACA 609
|| |||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 481 ACACTAGCGGTGGAGTACTAGCCGTTGCTGAGACGGCCACGCCGAGACGTGCATTGGACA 540
Query 610 CTTTCGGACAACGAACCTCGATCTATCGTGGTGTCACAAGACATCGATGGACTGGTCGAT 669
||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 541 CTTTCGGGCAGCGAACCTCGATCTATCGTGGTGTCACAAGACATCGATGGACGGGTCGCT 600
Query 670 ATGAGGCTCATCTATGGGATAATAGTTGTAGAAGGGAAGGCCAGTCTAGGAAAGGAAGAC 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGAGGCTCATCTATGGGATAATAGTTGTAGAAGGGAAGGCCAGTCTAGGAAAGGAAGAC 660
Query 730 AAGTTTACTTGGGTGGATATGACAAAGAAGATAAAGCAGCAAGATCATATGATCTAGCTG 789
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 661 AAGTATACTTGGGTGGATATGACAAAGAAGATAAAGCCGCAAGATCATATGATCTAGCTG 720
Query 790 CACTTAAGTACTGGGGTCCTTCAACTACTACTAATTTCCCCATTACAAACTACGAGAAAG 849
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 721 CACTTAAGTACTGGGGTCCTTCGACTACTACTAATTTCCCCATTACAAACTACGAGAAAG 780
Query 850 AAGTAGAGGAAATGAAGCACATGACGAGACAAGAGTTCGTGGCTGCCATTAGAAGGAAAA 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAGTAGAGGAAATGAAGCACATGACGAGACAAGAGTTCGTGGCTGCCATTAGAAGGAAAA 840
Query 910 GTAGTGGATTTTCGAGAGGCGCTTCGATGTATCGAGGAGTTACAAGGCATCACCAACATG 969
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTAGTGGCTTTTCCAGAGGCGCTTCGATGTATCGAGGAGTTACAAGGCATCACCAACATG 900
Query 970 GAAGATGGCAAGCAAGGATCGGCCGAGTCGCCGGAAACAAAGACCTCTACTTGGGAACTT 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GAAGATGGCAAGCAAGGATCGGCCGAGTCGCCGGAAACAAAGACCTCTACTTGGGAACTT 960
Query 1030 TTAGCACTGAGGAAGAAGCAGCAGAAGCTTACGATATAGCTGCAATAAAGTTTAGAGGAC 1089
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 961 TTAGCACTGAGGAAGAAGCAGCAGAAGCTTACGATATAGCTGCAATAAAGTTCAGAGGAC 1020
Query 1090 TTAATGCAGTGACCAACTTCGAGATCAACCGGTACGACGTGAAAGCCATTCTAGAGAGTA 1149
||||||||||||||||||| || ||||| |||| ||||| |||||||| |||||||| |
Sbjct 1021 TTAATGCAGTGACCAACTTTGAAATCAATAGGTATGACGTCAAAGCCATCCTAGAGAGCA 1080
Query 1150 GCACTCTTCCCATCGGAGGAGGCGCAGCTAAACGGCTCAAAGAAGCTCAAGCTCTTGAGT 1209
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1081 GCACTCTTCCCATAGGAGGAGGCGCAGCTAAACGGCTCAAAGAAGCTCAAGCTCTGGAGT 1140
Query 1210 CTTCAAGGAAACGCGAGGCGGAGATGATAGCCCTTGGTTCAAGTTTCCAGTACGGTGGT- 1268
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1141 CTTCAAGGAAACGTGAGGCGGAGATGATAGCCCTTGGTTCAAGTTTCCAGTACGG-GGTT 1199
Query 1269 GGCTCGAGCACAGGCTCTGGCTCCACCTCATCAAGACTTCAGCTTCAACCTTACCCTCTA 1328
||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||
Sbjct 1200 GGCTCGAGCACAGGCTCTGGCTCCAGCTCATCAAGGCTTCAGCTTCAACCATACCCTCTA 1259
Query 1329 AGCATTCAACAACCATTAGAGCCTTTTCTATCTCTTCAGAACAATGACATCTCTCATTAC 1388
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AGCATTCAGCAACCTTTAGAGCCTTTTCTATCTCTTCAGAACAATGACATCTCTCATTAC 1319
Query 1389 AACAACAACAATGCTCACGATTCCTCCTCTTTTAATCACCATAGCTATATCCAGACACAA 1448
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AGCAACAACAATGCTCATGATTCCTCCTCTTTTAATCACCATAGCTATATCCAGACACAG 1379
Query 1449 CTTCATCTCCACCAACAGACCAACAATTACTTGCAGCAACAGTCGAGCCAGAACTCTCAG 1508
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1380 CTTCATCTCCACCAACAGACCAACAATTACTTGCAGCAACAATCGAGCCAGAACTCGCAG 1439
Query 1509 CAGCTCTACAATGCGTATCTTCATAGCAATCCGGCTCTGCTTCATGGACTTGTCTCTACC 1568
||||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 1440 CAGCTCTACAACGCGTATCTTCATAGCAATCCGGCTCTTCTCCATGGCCTTGTCTCTACC 1499
Query 1569 TCTATCGTTGACAACAATAATAACAATGGAGGCTCTAGTGGGAGCTACAACACTGCAGCA 1628
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1500 TCTATCGTTGACAACAATAATAACAATGGAGGTTCTAGTGGGAGCTACAACACTGCAGCG 1559
Query 1629 TTTCTTGGGAACCACGGTATTGGTATTGGGTCCAGCTCGACTGTTGGATC-GACCGAGGA 1687
|||||||||||||||||||||||||||||||| ||||||||||||||||| | | |||||
Sbjct 1560 TTTCTTGGGAACCACGGTATTGGTATTGGGTCGAGCTCGACTGTTGGATCTG-CTGAGGA 1618
Query 1688 GTTTCCAACCGTTAAAACAGATTACGATATGCCTTCCAGTGATGGAACCGGAGGGTATAG 1747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 GTTTCCAACCGTTAAAACAGATTACGATATGCCTTCCAGTGATGGAACCGGAGGGTATAG 1678
Query 1748 TGGTTGGACCAGTGAGTCTGTTCAGGGGTCAAACCCTGGTGGTGTTTTCACTATGTGGAA 1807
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1679 TGGTTGGACCGGTGAGTCTGTTCAGGGGTCAAATCCTGGTGGTGTTTTCACTATGTGGAA 1738
Query 1808 TGAGTAAACAAGGATCTC 1825
||||||| || |||||||
Sbjct 1739 TGAGTAA-CATGGATCTC 1755
> Ahg923594 jgi|Araly1|923594|scaffold_104875.1
Length=1749
Score = 767 bits (415), Expect = 0.0
Identities = 815/1002 (81%), Gaps = 52/1002 (5%)
Strand=Plus/Plus
Query 584 GGCCACGCCAAGACGTG-CATTGGACACTTTCGGACAACGAACCTCGATCTATCGTGGTG 642
||| || || ||||| | | ||||| ||||| |||||||||||||| ||||||||||| |
Sbjct 544 GGCTACACCGAGACG-GACTTTGGAAACTTTTGGACAACGAACCTCTATCTATCGTGGAG 602
Query 643 TCACAAGACATCGATGGACTGGTCGATATGAGGCTCATCTATGGGATAATAGTTGTAGAA 702
| ||||||||| ||||||| ||| ||||||| |||||||| ||||||||||| |||||||
Sbjct 603 TTACAAGACATAGATGGACCGGTAGATATGAAGCTCATCTTTGGGATAATAGCTGTAGAA 662
Query 703 GGGAAGGCCAGTCTAGGAAAGGAAGACAAGTTTACTTGGGTGGATATGACAAAGAAGATA 762
| ||||| || || ||||||||||||||||| ||||| ||||| |||||||||||||| |
Sbjct 663 GAGAAGGACAATCAAGGAAAGGAAGACAAGTCTACTTAGGTGGGTATGACAAAGAAGAGA 722
Query 763 AAGCAGCAAGATCATATGATCTAGCTGCACTTAAGTACTGGGGTCCTTCAACTACTACTA 822
||||||| ||| |||||||||||||||||||||| || |||||||| || |||||||| |
Sbjct 723 AAGCAGCCAGAGCATATGATCTAGCTGCACTTAAATATTGGGGTCCCTCTACTACTACCA 782
Query 823 A-TTTCCCCATTACAAACTACGAGAAAGAAGTAGAGGAAATGAAGCACATGACGAGACAA 881
| ||| || || || || |||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 783 ACTTT-CCGATAACTAATTACGAGAAGGAAGTAGAGGAGATGAAAAACATGACGAGACAA 841
Query 882 GAGTTCGTGGCTGCCATTAGAAGGAAAAGTAGTGGATTTTCGAGAGGCGCTTCGATGTAT 941
||||| |||||| | || |||||||||||||| ||||| ||| | || || |||||||||
Sbjct 842 GAGTTTGTGGCTTCTATAAGAAGGAAAAGTAGCGGATTCTCGCGTGGTGCATCGATGTAT 901
Query 942 CGAGGAGTTACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTCGCC 1001
|| ||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 902 CGTGGAGTAACAAGGCATCATCAACATGGAAGATGGCAAGCAAGGATTGGCCGAGTTGCT 961
Query 1002 GGAAACAAAGACCTCTACTTGGGAACTTTTAGCACTGAGGAAGAAGCAGCAGAAGCTTAC 1061
||||||||||| || ||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 962 GGAAACAAAGATCTATACTTGGGAACATTCAGCACGGAGGAAGAAGCAGCAGAAGCTTAT 1021
Query 1062 GATATAGCTGCAATAAAGTTTAGAGGACTTAATGCAGTGACCAACTTCGAGATCAACCGG 1121
||||||||||| ||||||||| |||| || || || || || ||||| ||||| |||||
Sbjct 1022 GATATAGCTGCGATAAAGTTTCGAGGTCTAAACGCGGTTACAAACTTTGAGATAAACCGT 1081
Query 1122 TACGACGTGAAAGCCATTCTAGAGAGTAGCACTCTTCCCATCGGAGGAGGCGCAGCTAAA 1181
|||||||||||||| || |||||||| | ||| ||||| || ||||| || || ||||||
Sbjct 1082 TACGACGTGAAAGCTATCCTAGAGAGCAACACACTTCCTATAGGAGGTGGTGCGGCTAAA 1141
Query 1182 CGGCTCAAAGAAGCTCAAGCTCTTGAGTCTTCAAGGAAACGCGAGGCGGAGATGATAGCC 1241
||||||||||||||||||||||| || || || || |||||||||| | |||||||||
Sbjct 1142 CGGCTCAAAGAAGCTCAAGCTCTAGAATCATCGAGAAAACGCGAGGA--A-ATGATAGCC 1198
Query 1242 CTTGGTTCAAGTTTCCA---GTACGGTGGTG-GCTCGAGCAC-AGGCTCTG--GCT-CCA 1293
|| || |||| |||||| ||| |||| | | || || | || ||||| ||| |||
Sbjct 1199 CTCGGATCAAATTTCCATCAGTATGGTGCAGCGAGCG-GCTCGAG-CTCTGTTGCTTCCA 1256
Query 1294 CCTCATCAAGACTTCAGCTTCAACCTTACCCTCTAAGCATTCAACAACCATTAGAGCCTT 1353
||| | | | |||||||||||||| ||||| ||||||||||||||||| || |||| |
Sbjct 1257 GCTC-T-AGG-CTTCAGCTTCAACCATACCCACTAAGCATTCAACAACCTTTTGAGCATC 1313
Query 1354 TTCTATC-TCTTCAGAACAATGACAT-CTCT-CATTACAACAACAACAATGCTCACGATT 1410
||| ||| || |||| | | || | |||| || |||||||| | | | ||| | | |
Sbjct 1314 TTC-ATCATCATCAGC-CTTT-ACTTACTCTACAGAACAACAACGATA-T-CTCTC-AGT 1367
Query 1411 CCTCCTCTTTTAATCACCATAGCTATATCCAGACACAACTTCATCTCCACCAACAG-A-- 1467
|| | || | | |||| || || ||||| || |||||||| |||||||| |
Sbjct 1368 A-TCATGATT----C-CTATAGTTACATTCAGACGCAGCTTCATCTTCACCAACAACAAA 1421
Query 1468 CCAACAATTACTTGCAG-CAAC-AGTCGAGCCAGAACTCTCAGCAGCTCTACAATGCGTA 1525
||||||||||||||||| | | |||| | | || || | |||||||||||||| ||
Sbjct 1422 CCAACAATTACTTGCAGTCTTCTAGTC-A-C-AGCAC----A-CAGCTCTACAATGCTTA 1473
Query 1526 TCTTCATAGCAATCC-GGCTCTGCTTCATGGACTTG-TCTCT 1565
|||||| ||||| || || | |||||||||| ||| |||||
Sbjct 1474 TCTTCAGAGCAACCCTGGTT-TGCTTCATGG-CTTTATCTCT 1513
Score = 143 bits (77), Expect = 6e-33
Identities = 224/288 (78%), Gaps = 38/288 (13%)
Strand=Plus/Plus
Query 78 AAAAAGAA-GAAAATGAATTCTAACAACTGGCTTGGC-TTTCCTCTTTCACCGAAC-AAC 134
||||| || | ||||||||||||||||||||||| || |||||||| ||||| ||| ||
Sbjct 10 AAAAAAAAGGGAAATGAATTCTAACAACTGGCTT-GCTTTTCCTCTATCACC-AACTCAC 67
Query 135 TCTTCTTTGCCTCCT--CA-TGA---AT-AC-AA-----C----C--T-T-GGCTTGGTC 173
||||||||||||||| || | | | || || | | | | || ||||||
Sbjct 68 TCTTCTTTGCCTCCTCACATTCACTCTTCACAAACTTCTCATTTCAATCTAGGTTTGGTC 127
Query 174 AGCGACCATATGGACAACCCTTTTC-AAACACAAGAGTGGAATATGATCAATCCACACGG 232
| |||| |||| ||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct 128 AACGACAATATCGACAACCCTTTTCAAAAC-CAAGAATGGAATATGATCAATCCACACGG 186
Query 233 TGGAGGAGGAGATGAAGGAGGAGAGGTTCCAAAAGTGGCCGATTTTCTC-GGTGTGAGCA 291
|||||| || || | || |||||||||||||||||||| ||||| || || |||||||
Sbjct 187 TGGAGGCGGCGA--A-GGTGGAGAGGTTCCAAAAGTGGCTGATTT-CTTAGGAGTGAGCA 242
Query 292 AACCGGACGAAAACCAATCCA-ACCAC--C-TAGTAGCTTACAACGAC 335
|| ||| || | || ||| ||||| | | ||| |||||||||||
Sbjct 243 AATCGGGGGATCATCA-TCCCGACCACAACCTCGTACCTTACAACGAC 289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80408507195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5