BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G20850.1

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479613 jgi|Araly1|479613|fgenesh2_kg.3__2314__AT3G20850.1         346    7e-95
  Ahg488876 jgi|Araly1|488876|fgenesh2_kg.6__2010__AT5G19810.1        84.2    6e-16


> Ahg479613 jgi|Araly1|479613|fgenesh2_kg.3__2314__AT3G20850.1
Length=307

 Score =  346 bits (187),  Expect = 7e-95
 Identities = 224/241 (93%), Gaps = 5/241 (2%)
 Strand=Plus/Plus

Query  164  ctcctcctcctactccggtctattctcctcctccagctgatcttcctcctcctcctact-  222
            |||||  |||| ||||||| || | | ||||||| |||||||||||||||||||||||| 
Sbjct  71   CTCCTATTCCTTCTCCGGTATA-T-T-CTCCTCCGGCTGATCTTCCTCCTCCTCCTACTC  127

Query  223  ccGTACTATTCTCCACCGGCTGATCTtcctcctcctactccgatctatcctcctccggtt  282
            |||| ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct  128  CCGT-CTATTCTCCTCCGGCTGATCTTTCTCCTCCTACTCCAATCTATCCTCCTCCGGTT  186

Query  283  gcttttcctcctcctcAAGCTTATCAAGCCTACTATTACAGGAAATCTCCACCACCACCA  342
            | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  187  GTTTTTCCGCCTCCTCAAGCTTATCAAGCCTACTATTACAGGAAATCTCCACCACCACCA  246

Query  343  CCTTCTAAATATGGAAAAGTGTATCCACCTCCTCCAGCCAAACCATGGTGGTGGTTGTTG  402
            ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  247  CCTTCTAGATATGGAAAAGTGTATCCACCTCCTCCCGCCAAACCATGGTGGTGGTTGTTG  306

Query  403  T  403
            |
Sbjct  307  T  307


> Ahg488876 jgi|Araly1|488876|fgenesh2_kg.6__2010__AT5G19810.1
Length=685

 Score = 84.2 bits (45),  Expect = 6e-16
 Identities = 79/94 (84%), Gaps = 8/94 (9%)
 Strand=Plus/Plus

Query  288  tcctcctcctcAAGCTTATCAAG-C-CTAC-TATTACAGGA-AATCTCCACCACCACCAC  343
            ||||||||||| | |   ||||| | || | || |||| || || |||||||||||||||
Sbjct  477  TCCTCCTCCTCGA-C--CTCAAGCCGCTGCTTACTACAAGAGAA-CTCCACCACCACCAC  532

Query  344  CTTCTAAATATGGAAAAGTGTATCCACCTCCTCC  377
            ||||||||||||||| ||| ||||||||||||||
Sbjct  533  CTTCTAAATATGGAAGAGTTTATCCACCTCCTCC  566



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14537279409


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5