BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20860.1
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318835 jgi|Araly1|318835|fgenesh1_pm.C_scaffold_3001851 2117 0.0
> Ahg318835 jgi|Araly1|318835|fgenesh1_pm.C_scaffold_3001851
Length=1284
Score = 2117 bits (1146), Expect = 0.0
Identities = 1238/1284 (96%), Gaps = 0/1284 (0%)
Strand=Plus/Plus
Query 1 ATGGCAAACAAGATAAGTGAAACTGCTTCCAAGATGGACGATTATGAGGTCGTGGAACAG 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1 ATGGCAAACAAGATAAGTGAAACTGCTTCCAAGATGGATGATTATGAAGTCGTGGAACAG 60
Query 61 ATCGGACGAGGCGCTTTTGGTTCTGCTTTTCTTGTAATTCACAAGTCCGAGAGACGAAAG 120
||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 61 ATCGGACGAGGCGCTTTCGGTTCTGCTTTTCTTGTTATTCACAAGTCTGAGAGACGAAAG 120
Query 121 TATGTGGTTAAGAAGATTCGTTTGGCTAAACAAACAGAGAGATGCAAGCTTGCTGCAATC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATGTGGTTAAGAAGATTCGTTTGGCTAAACAAACAGAGAGATGCAAGCTTGCTGCAATC 180
Query 181 CAAGAGATGAGTTTGATATCAAAGCTTAAGAGTCCTTATATTGTGGAGTACAAAGATTCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 CAAGAGATGAGTTTGATATCAAAGCTTAAGAGTCCTTATATTGTGGAGTATAAAGATTCA 240
Query 241 TGGGTTGAAAAGGATTGTGTATGCATTGTAACTAGTTATTGTGAGGGTGGAGACATGACT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGGTTGAAAAGGATTGTGTATGCATTGTAACTAGTTATTGTGAGGGTGGAGACATGACT 300
Query 301 CAAATGATAAAGAAATCAAGAGGAGTATTCGCGTCCGAAGAAAAACTCTGTAGATGGATG 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 CAAATGATAAAGAAATCAAGAGGAATATTCGCGTCCGAAGAAAAACTCTGTAGATGGATG 360
Query 361 GTGCAGCTACTGTTGGCTATAGATTACCTCCATAACAATCGAGTTCTTCACCGTGACCTT 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTGCAGCTATTGTTGGCTATAGATTACCTCCATAACAATCGAGTTCTTCACCGTGACCTT 420
Query 421 AAGTGCTCCAACATATTCCTCACTAAAGAGAACGAGGTTCGGTTAGGTGACTTTGGCCTA 480
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 AAGTGTTCCAACATATTCCTCACTAAAGAAAACGAGGTTCGGTTAGGTGACTTTGGCCTA 480
Query 481 GCAAAACTTCTAGGCAAAGATGATCTTGCTTCCTCGATGGTAGGAACACCAAACTACATG 540
||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GCAAAACTTTTAGGCAAAGACGATCTTGCTTCCTCGATGGTGGGAACACCAAACTACATG 540
Query 541 TGCCCTGAACTTCTTGCAGATATACCTTATGGCTACAAATCTGATATTTGGTCTTTAGGT 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 TGCCCTGAACTTCTTGCAGATATACCTTACGGCTACAAATCTGATATTTGGTCTTTAGGT 600
Query 601 TGTTGTATGTTTGAAGTAGCTGCTCATCAACCGGCCTTCAAGGCTCCTGACATGGCAGCA 660
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 601 TGCTGTATGTTTGAAGTAGCTGCACATCAACCGGCCTTCAAGGCTCCTGACATGGCAGGA 660
Query 661 CTCATCAACAAGATTAACCGCTCTTCGCTTTCTCCTCTCCCAGTCATGTATTCCTCTTCA 720
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 661 CTCATCAACAAGATTAACCGCTCTTCGCTTTCTCCTCTCCCGGTTATGTATTCCTCTTCA 720
Query 721 TTAAAAAGACTGATCAAAAGTATGTTGCGCAAGAACCCTGAACATAGACCAACTGCTGCA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTAAAAAGACTGATCAAAAGTATGTTGCGCAAGAACCCTGAACATAGACCAACTGCTGCA 780
Query 781 GAATTGCTAAGACATCCACACTTACAGCCATATCTTGCACAATGCCAAAATCTGTCCCCA 840
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 781 GAATTGCTAAGACATCCTCACTTACAGCCATATCTTGCACAATGCCAAAACCTGTCTCCG 840
Query 841 GTTTTCAAACCGGTTGTGTCCAAATCAGAACACAACACCAACGAAAACAGAACAGGTCTC 900
||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 841 GTTTTCAAACCAGTTGTCTCCAAATCAGAACACAACACCTACGAAAACAGAACAGGTCTC 900
Query 901 CCCCCGAAGACCAAATCCGCAAAAACACCCATCAAACACAATCAAGAATCAGAGGAAACA 960
||||||||||||||||||| |||||||||||| ||||| ||||||||| |||||||||||
Sbjct 901 CCCCCGAAGACCAAATCCGTAAAAACACCCATTAAACATAATCAAGAAGCAGAGGAAACA 960
Query 961 GAGAAGAAAAATAAGGATACGAGCTCTAGTTCAAAAGACAAGGAGAGACCAGCAAAGAGC 1020
||||||| ||| ||| |||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 961 GAGAAGAGAAACAAGAATACTAGTTCTGGTTCAAAAGACAAGGAGAGACCAGCAAAGAGC 1020
Query 1021 CAAGAGATGTCAGTGATTAGCACATTAACGTTGCTACGCGAGTTTCAGAAGAAAAGCCCG 1080
|||||||||||| ||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 1021 CAAGAGATGTCATTGATTAGCACATTAACGCTACTACGTGAGTTTCAGAAGAAAAGCCCG 1080
Query 1081 AAAAGCGAGGAGAGAGCAGAAGCATTGGAATCTTTGTTGGAGCTTTGTGCAGGTTTACTT 1140
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 AAAAGCGAGGAGAGGGCGGAAGCATTGGAATCATTGTTGGAGCTTTGTGCAGGTTTACTT 1140
Query 1141 AGGCAAGAGAAGTTTGATGAGCTTGAAGGAGTCTTGAAACCTTTTGGAGATGAAACAGTT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AGGCAAGAGAAGTTTGATGAGCTTGAAGGAGTCTTGAAACCTTTTGGAGATGAAACAGTT 1200
Query 1201 TCATCAAGAGAAACCGCTATTTGGCTTACGAAGAGTCTCATGAATGTAAAGAGAAAGCAA 1260
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1201 TCATCAAGAGAAACCGCTATTTGGCTTACAAAGAGTCTCATGAATGTAAAGAGAAAGCAA 1260
Query 1261 AACGATGATGAAACCAATATTTAA 1284
|||||||||||||||||| |||||
Sbjct 1261 AACGATGATGAAACCAATCTTTAA 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47996752503
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5