BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G20865.1

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930035 jgi|Araly1|930035|scaffold_302492.1                        283    7e-76


> Ahg930035 jgi|Araly1|930035|scaffold_302492.1
Length=239

 Score =  283 bits (153),  Expect = 7e-76
 Identities = 211/236 (89%), Gaps = 15/236 (6%)
 Strand=Plus/Plus

Query  51   aaaaacaaaaaaaaaaCAAGAAATAATGGAGAT---GAA-G-----AACATCTTTGTGGC  101
            ||||| |||||| | |||||||| |||||||||   ||| |     ||||||||||||||
Sbjct  1    AAAAA-AAAAAACACACAAGAAAGAATGGAGATGAAGAACGTCACCAACATCTTTGTGGC  59

Query  102  CCTCTTTATCTCGGCCGTGTTAGTGAGCTCAGTCTCCGCGGCTACAATGGAGTCTCCAGC  161
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  60   CCTCTTTATCTCGGCCGTGTTAGTGAGCTCAGTCTCCGCAGCTACAATGGAGTCTCCAGC  119

Query  162  ACCATCACCAGGTGCTTCCTCTGCCTCCACCGTAGCTTTTCCGGTGGTTGGCTCCATTGT  221
            |||||||||||||||||||||||||   || ||||||||||| |||||||| ||||| ||
Sbjct  120  ACCATCACCAGGTGCTTCCTCTGCC---ACTGTAGCTTTTCCAGTGGTTGGTTCCATCGT  176

Query  222  TGCTGCATCACTCTCCGCCTTCTTGGCTCTTCTCTTGCAGTAGAAA--GACAAGAG  275
            ||||||||||||||| |||||||||||||||||||||||||| |||  ||||||||
Sbjct  177  TGCTGCATCACTCTCTGCCTTCTTGGCTCTTCTCTTGCAGTAAAAATTGACAAGAG  232



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16597681215


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5