BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20865.1 Length=459 Score E Sequences producing significant alignments: (Bits) Value Ahg930035 jgi|Araly1|930035|scaffold_302492.1 283 7e-76 > Ahg930035 jgi|Araly1|930035|scaffold_302492.1 Length=239 Score = 283 bits (153), Expect = 7e-76 Identities = 211/236 (89%), Gaps = 15/236 (6%) Strand=Plus/Plus Query 51 aaaaacaaaaaaaaaaCAAGAAATAATGGAGAT---GAA-G-----AACATCTTTGTGGC 101 ||||| |||||| | |||||||| ||||||||| ||| | |||||||||||||| Sbjct 1 AAAAA-AAAAAACACACAAGAAAGAATGGAGATGAAGAACGTCACCAACATCTTTGTGGC 59 Query 102 CCTCTTTATCTCGGCCGTGTTAGTGAGCTCAGTCTCCGCGGCTACAATGGAGTCTCCAGC 161 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 60 CCTCTTTATCTCGGCCGTGTTAGTGAGCTCAGTCTCCGCAGCTACAATGGAGTCTCCAGC 119 Query 162 ACCATCACCAGGTGCTTCCTCTGCCTCCACCGTAGCTTTTCCGGTGGTTGGCTCCATTGT 221 ||||||||||||||||||||||||| || ||||||||||| |||||||| ||||| || Sbjct 120 ACCATCACCAGGTGCTTCCTCTGCC---ACTGTAGCTTTTCCAGTGGTTGGTTCCATCGT 176 Query 222 TGCTGCATCACTCTCCGCCTTCTTGGCTCTTCTCTTGCAGTAGAAA--GACAAGAG 275 ||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| Sbjct 177 TGCTGCATCACTCTCTGCCTTCTTGGCTCTTCTCTTGCAGTAAAAATTGACAAGAG 232 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16597681215 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5