BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20870.1
Length=1327
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479615 jgi|Araly1|479615|fgenesh2_kg.3__2316__AT3G20870.1 1604 0.0
> Ahg479615 jgi|Araly1|479615|fgenesh2_kg.3__2316__AT3G20870.1
Length=1143
Score = 1604 bits (868), Expect = 0.0
Identities = 950/989 (96%), Gaps = 8/989 (1%)
Strand=Plus/Plus
Query 225 ATTTCGTTTGTGATTTTGTTAAGGCTAGCTTCAATTCTATTCAGATTAATCAATGGATTC 284
||||||||||||||||| | ||| ||||||||||||| | | |||||| ||||||||
Sbjct 162 ATTTCGTTTGTGATTTTATCAAGCCTAGCTTCAATTC----CTG-TTAATCGATGGATTC 216
Query 285 TCAGATGCTCGTGGCGCTTGGACTATCCCTTGTTGGGGGATTAAGTACCTCTTTAGGTGC 344
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 217 TCAGATGCTCGTGGCGCTTGGACTATCCCTTGTTGGGGGATTAAGTACTTCTTTAGGTGC 276
Query 345 GCTTTTTGTAGTTCTTAGTGAGACTCCCAATATGAAGATGCTTGGACTTCTACAGGGTTT 404
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 277 GCTTTTCGTAGTTCTTAGTGAGACTCCCAATATGAAGATGCTTGGACTTCTTCAGGGTTT 336
Query 405 TGCTTCAGGTCTGATGTTGAGCATATCGTTCTTGGATTTGGCTCATAATGCTATAAACTC 464
||| |||||||||||||||| ||||||||| |||||||||||||||||||||| |||||
Sbjct 337 TGCGGCAGGTCTGATGTTGAGTATATCGTTCCTGGATTTGGCTCATAATGCTATTAACTC 396
Query 465 TATTGGGTTCTTTAAAGCCAACCTCTGGTTTTTCGGTGGTGTGATATTCTTTGCGTGTAT 524
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 397 TATTGGGTTCTTAAAAGCCAATCTCTGGTTTTTCGGTGGTGTGATATTCTTTGCGTGTAT 456
Query 525 TACCAAATTCATACCCGAACCAACACTTGGTCCTTCTACTGACG-GCAAAAGAAGAAAGA 583
| ||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct 457 TGCCAAATTCATACCCGAACCAACAGTTGGTCCTTCTACTGACGTG-AAAAGAAGAAAGA 515
Query 584 AAAATGGAGACGAGGGAGGTAAAGACATGATGAAGAAGCATCGCAAGCAAGTCTTATATA 643
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 516 AAAGTGGAGACGAGGGAGGTAAAGACACGATGAAGAAGCATCGCAAGCAAGTCTTATATA 575
Query 644 GTGGACTTATAACAGCTATAGGCATAAGCTTGCACAATTTTCCAGAAGGGATGGCTGTAT 703
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 GTGGACTTATTACAGCTATAGGCATAAGCTTGCACAATTTTCCAGAAGGGATGGCTGTAT 635
Query 704 TTCTCGGATCAATAAAGGGCATGCGAGTTGGTGTTAATCTGGCTTTGGCCATCGCTTTAC 763
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 636 TTCTCGGATCAATTAAGGGCATGCGAGTTGGTGTTAATCTGGCTTTGGCCATTGCTTTAC 695
Query 764 ACAACATTCCCGAGGGTGTTGCAGTTGCACTTCCTATTTATTTTGCAACAGAGAGCAAAT 823
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 ACAACATTCCTGAGGGTGTTGCAGTTGCACTTCCTATTTATTTTGCAACAGAGAGCAAAT 755
Query 824 GGCAGGCATTTAAGTTGGCAACACTCTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCG 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 GGCAGGCATTTAAGTTGGCAACACTCTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCG 815
Query 884 TGGCCTATCTATTCCCGAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGGGAGCAG 943
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 TGGCCTATCTTTTCCCAAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGGGAGCAG 875
Query 944 TTGGTGGAATCATGGCTTTCCTAACATTGCACGAAATGCTTCCTTTGGCATTTGATTATG 1003
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 876 TGGGTGGAATCATGGCTTTCCTAACGTTGCACGAAATGCTTCCTTTGGCATTTGATTATG 935
Query 1004 CGGGACAGAAACAAGCTGTGAAAGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAGTC 1063
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 936 CGGGACAGAAACAAGCTGTGAAGGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAGTC 995
Query 1064 TTTACTTTCTGGAGCTGAGTTTGCCTGAGACAATGAGCTTGTAAGTTTAATGATGTCATG 1123
|||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 996 TTTACTTTCTGGAGCTGAGTTTACCTGATACAATGAGCTTGTAAGGTTAATGATGTCATG 1055
Query 1124 TGCAATAATTGCCTCCCCCAAAGAGATAAATCAGTCTCTGGAGTGAAGTAGTCTCTTTGT 1183
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 TGCAATAATTGCCTCCCC-AAAGAGATAAATCAGTCTCTGGAGTGAAGTAGTCTCTTTGT 1114
Query 1184 ATCTGTAAAGACTGAAATCTGTAAACAAT 1212
|||||||||||||||||||||||||||||
Sbjct 1115 ATCTGTAAAGACTGAAATCTGTAAACAAT 1143
Score = 152 bits (82), Expect = 6e-36
Identities = 113/126 (90%), Gaps = 9/126 (7%)
Strand=Plus/Plus
Query 1 TAGTAGGTAGAAGAAAACGAGAGGCAAGGGTCAGGCATAATATGCTCTCTCACTAGCCTA 60
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1 TAGTAGGTAGAAGAAAACGAGAGGCAAGGGTCAGGCATAATATACTCTCTCACTAGGCTA 60
Query 61 AGAATTTGTAGAAGCGAAAACCATGGATTAGGGTTTTTCAGTTTCCTCTTTCAATCGATT 120
|||||||| | | || | |||||||||||||||||||||||||| ||| |||||||
Sbjct 61 AGAATTTG-A-A-GC-----C-ATGGATTAGGGTTTTTCAGTTTCCTCCTTCCATCGATT 111
Query 121 AACCCA 126
||||||
Sbjct 112 AACCCA 117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49636037934
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5