BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20880.1
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318837 jgi|Araly1|318837|fgenesh1_pm.C_scaffold_3001853 1581 0.0
Ahg905110 jgi|Araly1|905110|Al_scaffold_0003_2238 333 2e-90
Ahg473652 jgi|Araly1|473652|fgenesh2_kg.1__3606__AT1G34790.1 174 1e-42
> Ahg318837 jgi|Araly1|318837|fgenesh1_pm.C_scaffold_3001853
Length=1062
Score = 1581 bits (856), Expect = 0.0
Identities = 997/1063 (94%), Gaps = 17/1063 (2%)
Strand=Plus/Plus
Query 284 ATGGCTGATCCAGATTGTATCTTCAGAAATGGATATGTAGACTACTATAACTATAGCTTC 343
||||||||||||| ||||||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 1 ATGGCTGATCCAGCTTGTATCTTCAAAAATGGATATGTCGACTACTATGACTATAGCTTC 60
Query 344 AACTATGCCACTTCCCTCTCACGCATCTACAACTCTCATGACAGCTTTTATTATCCTCAC 403
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 61 AACTATGCCACTTCCCTCTCACGCATCTACAACTCTCATGACAACTTCTATTATCCTCAC 120
Query 404 CAGACGACAAACCCAAACATCAACGA-AAACCCTAATTTGACTTCACCTGACTCTCCTCC 462
|| || |||||||||||||||||| | |||||||||||| | ||||||||||||||||||
Sbjct 121 CATACCACAAACCCAAACATCAAC-ACAAACCCTAATTTTATTTCACCTGACTCTCCTCC 179
Query 463 ACTTAGAGAAGCCCTCCCTCTCCTTAGCTTAAGCCCCATTCATAAGCATCAAGAACCTAC 522
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 180 ACTTAGAGAAGCCCTCCCTCTGCTTAGCTTAAGCCCCATTCATAAGCATCAAGAACCTAT 239
Query 523 TGCTAACCACCATGAGTACTATTTCATGGAGACGACAGAAACTTCCTCTAATTCAAACTT 582
|||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 TGCTCACCATCATGAGTACTATTTCATGGAGACGACAGAAACTTCTTCTAATTCAAACTT 299
Query 583 TCTTGATCA--A------T----GCCAAGACAGTTATCGTCA---TGATGTAACCGTGGA 627
| ||||||| | | ||||||| | | | ||||| ||||||| |||||||
Sbjct 300 TATTGATCATGATCTTGGTCAAAGCCAAGAAACTCACCGTCATCTTGATGTAGCCGTGGA 359
Query 628 TCTTCATCTAGGGTTACCAAACCTCGGTGATGGTGGAAGCAGCAGCAGCGATGTGGTCCT 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTTCATCTAGGGTTACCAAACCTCGGTGATGGTGGAAGCAGCAGCAGCGATGTGGTCCT 419
Query 688 TGATTCCACCGACCACCAAGAGGGTCACCATGATCATCATCAAGATCAAGGACTTGAAGT 747
||| ||||||||| ||||||| ||| |||||||||||||||||||||||| | |||||
Sbjct 420 TGAATCCACCGACTTCCAAGAGCATCATCATGATCATCATCAAGATCAAGGAGTAGAAGT 479
Query 748 TACTATGGCTTCTGACCATGATGATGAACATGGTGGCTTACAAAGGGGTAATCATCTTCA 807
|||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 480 TACTATTGCTTCTGATCATGATGATGATCACGGTGGCTTACAAAGGGGTAATCATCTTCA 539
Query 808 TCACTTTTGGATCCCGACTCCTTCTCAGATTCTGATGGGTCCAACACAGTTCTCTTGTCC 867
|||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 TCACTTTTGGATTCCTACACCTTCTCAGATTCTGATGGGTCCTACACAGTTCTCTTGTCC 599
Query 868 TCTATGCTTCAAGACTTTCAACAGATACAACAACATGCAAATGCACATGTGGGGACATGG 927
||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 600 TCTATGCTTCAAGACCTTCAACAGATACAATAATATGCAAATGCACATGTGGGGACATGG 659
Query 928 TTCACAATACAGAAAAGGACCGGAGTCGCTGAGAGGGACACAACCAACGGCGATGCTGAA 987
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 TTCACAATACAGAAAAGGACCGGAGTCGCTAAGAGGGACACAACCAACGGCGATGCTGAA 719
Query 988 GCTGCCTTGCTACTGCTGTGCACCGGGCTGCAAGAACAACATAGACCACCCAAGGGCTAG 1047
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 720 GCTGCCTTGCTACTGCTGTGCACCGGGCTGCAAGAACAACATAGACCACCCGAGGGCAAG 779
Query 1048 GCCGCTCAAGGACTTCCGTACGCTTCAGACACATTACAAGCGGAAGCACGGTGTGAGGCC 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 780 GCCGCTCAAGGACTTCCGTACGCTTCAGACACATTACAAGCGGAAGCACGGTGTGAGACC 839
Query 1108 CTTTGCTTGTCGTAGGTGTGGGAAGGCATTTGCGGTCAAAGGAGATTGGAGGACTCACGA 1167
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 840 CTTTGCTTGTCGTAGGTGTGGGAAGGCTTTTGCGGTCAAAGGAGATTGGAGGACCCACGA 899
Query 1168 GAAGAACTGTGGGAAGCTATGGTATTGCTCATGTGGGTCGGATTTTAAGCACAAGAGGTC 1227
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 GAAGAACTGTGGGAAGCTATGGTATTGCTCATGTGGGTCGGATTTCAAGCACAAGAGGTC 959
Query 1228 ACTTAAAGACCACGTTAAGGCCTTTGGGAATGGTCATGTCCCTTGTTGTGGAATTGATCA 1287
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ACTTAAGGACCACGTCAAGGCCTTTGGGAATGGTCATGTCCCTTGTTGTGGAATTGATCA 1019
Query 1288 TGAGGAAGAGGAGGCTGCTTCTGATGTCGAGCAGCAAGAATGA 1330
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGAGGAAGAGGAGGCTGCTTCTGATGTCGAGCAGCAAGAATGA 1062
> Ahg905110 jgi|Araly1|905110|Al_scaffold_0003_2238
Length=219
Score = 333 bits (180), Expect = 2e-90
Identities = 210/223 (94%), Gaps = 8/223 (4%)
Strand=Plus/Plus
Query 6 CAAGTTTCTTTTTCCCTTCTTCAAACTTTCTCATTGTTTCTTTTCTACCTACTATCTTCT 65
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 CAAGTTTCTTTTTCCCTTCTTCAAACTTTCTCCTTGTTTCTTTTCTACCTACTATCTTCT 60
Query 66 CCGTACCCTTTTCTATCAATTAACATATGCTATTTTCCACTGTTTTGTCACATCGCACCT 125
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGTACCCTTTTCTATCAATTATCATATGCTATTTTCCACTGTTTTGTCACATCGCACCT 120
Query 126 tatatatactcacatgtcctaatacactcatacactcatacacacacccacatatacatg 185
||||||||| |||||||| |||||||||||||||| | ||| | | |||||||||||
Sbjct 121 TATATATACCCACATGTCGTAATACACTCATACAC--A--CAC-C-C--ACATATACATG 172
Query 186 catatCTAGCTTTCACTGGTTTCTTAACACAACTCCATCATCT 228
||||||||||||||||||||||||||||||||| |||||||||
Sbjct 173 CATATCTAGCTTTCACTGGTTTCTTAACACAACCCCATCATCT 215
> Ahg473652 jgi|Araly1|473652|fgenesh2_kg.1__3606__AT1G34790.1
Length=1059
Score = 174 bits (94), Expect = 1e-42
Identities = 306/406 (75%), Gaps = 24/406 (6%)
Strand=Plus/Plus
Query 872 TGCTTCAAGACTTTCAA-CAGATACAACAA-CATGCAAATGCACATGTGGGGACATGGTT 929
||||||||||| ||||| | | ||||| || | | || ||||||||||||||||||||||
Sbjct 477 TGCTTCAAGACATTCAATC-GTTACAATAATC-TTCAGATGCACATGTGGGGACATGGTT 534
Query 930 CACAATACAGAAAAGGACCGGAGTCGCTGAGAGGGACACAACCAACG-GCGATGCTGAAG 988
||||||||||||||||||| ||||| |||| ||| || || ||| || || ||| | | |
Sbjct 535 CACAATACAGAAAAGGACCAGAGTCACTGAAAGGCACGCAGCCA-CGAGCCATGTT-AGG 592
Query 989 C-TGCCTTGCTACTGCTGTG-C-ACCGGGCTGCAAGAACAACATAGACCACCCAAGGGCT 1045
| ||||| |||||||| | | | ||| || | |||| |||| ||||| || | |
Sbjct 593 GATCCCTTGTTACTGCTGCGTCGAA-GGG-TGTAGGAACCACATTGACCATCCTCGTTCC 650
Query 1046 AGGCCGCTCAAGGACTTCCGTACGCTTCAGACACATTACAAGCGGAAGCACGGTGTGAGG 1105
| ||| ||||| ||||| | ||||| || || || ||||| || || ||||| |
Sbjct 651 AAGCCACTCAAAGACTTTAGAACGCTCCAAACGCACTACAAACGCAAACACGGCCACAAA 710
Query 1106 CCCTT-TGCTTGTCGTAGGTGTGGGAAGGCATTTG-CGGTCAAAGGAGATTGGAGGACTC 1163
||||| | | ||||| | || || ||| | |||| | ||||| || |||||| | || |
Sbjct 711 CCCTTCT-CGTGTCGCATTTGCGGTAAG-CTTTTGGCTGTCAAGGGCGATTGGCGAACAC 768
Query 1164 ACGAGAAGAACTGTGGGAAGC-TATGG-TATTGC-TCATGTGGGTCGGATTTTAAGCACA 1220
| ||||||||||||||||| | | ||| | |||| | || || || |||||||| ||||
Sbjct 769 ATGAGAAGAACTGTGGGAAACGT-TGGGT-TTGCGTT-TGCGGTTCTGATTTTAAACACA 825
Query 1221 AGAGGT-CACTTAAAGACCACGTTAAGGCCTTTGGGAATGGTCATG 1265
| | || | ||||| ||||| ||||| || |||||| ||||||||
Sbjct 826 A-ACGTTCCCTTAAGGACCATGTTAAAGCTTTTGGGCCTGGTCATG 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58087623625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5