BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20890.1
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318838 jgi|Araly1|318838|fgenesh1_pm.C_scaffold_3001854 1365 0.0
> Ahg318838 jgi|Araly1|318838|fgenesh1_pm.C_scaffold_3001854
Length=1071
Score = 1365 bits (739), Expect = 0.0
Identities = 825/867 (95%), Gaps = 4/867 (0%)
Strand=Plus/Plus
Query 106 ATATGGAGATGGTCCTGATGGGCGTGAGATGGGACCTAAGCGTCAAAGAATGATTGATCA 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 ATATGGAGATGGTCCTGATGGGCGTGAGATGGGACCTAAGCGTCAAAGAATGATTGATCA 266
Query 166 AGGTCCTCCAGGACCATTCTATGGACCTCATCCTAGTTCTGGCTTTATGTATAACCCTTA 225
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 267 AGGTCCTCCTGGACCATTTTATGGACCTCATCCTGGTTCTGGCTTTATGTATAACCCTTA 326
Query 226 TGGATTTGTTGCTCCTCCTCCACCTCCTCCTTTTCCTGCGGTTCGACTCCGTGGTTTACC 285
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 327 TGGATTTGTTGCTCCTCCTCCACCTCCTCCTTTTCCTGCTGTTCGACTCCGTGGTTTACC 386
Query 286 CTTTGATTGCGCAGAGCTTGATGTAGTAGAGTTTTTTCATGGTTTGGATGTGGTTGATGT 345
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 CTTCGATTGCGCAGAGATTGATGTAGTAGAGTTTTTTCATGGTTTGGATGTGGTTGATGT 446
Query 346 CTTGTTTGTTCACAGGAACAATAAGGTTACTGGAGAAGCCTTTTGCGTTTTGGGTTATCC 405
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 447 CTTGTTTGTTCACAAGAACAATAAGGTCACTGGAGAAGCCTTTTGCGTTTTGGGTTATCC 506
Query 406 CCTTCAGGTTGATTTTGCTCTTCAGAAGAATAGACAGAACATGGGAAGGAGATATGTAGA 465
||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 507 CCTCCAGGTTGATTTTGCTCTTCAAAAGAACAGGCAGAACATGGGAAGGAGATATGTAGA 566
Query 466 AGTTTTTAGGAGTACAAAACAGGAGTACTATAAGGCTATTGCTAACGAGGTTGCGGAATC 525
||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 567 AGTTTTTAGGAGTACGAAACAGGAGTACTATAAGGCTATTGCTAATGAGATTGCCGAATC 626
Query 526 TCGTGTCCAtggtatggctagtggtggtggtggaggtttaggtggtggca-atggaagtg 584
||||| |||||||||||||||||| |||||||||||| ||||| || | | || |||
Sbjct 627 TCGTGCCCATGGTATGGCTAGTGGCGGTGGTGGAGGTGGCGGTGGAGGTACA-GGTGGTG 685
Query 585 g-aggtggaggtggaggtggtggcggtggaggtcgaataagtggtggaAGTTCACCTCGC 643
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 GCAA-TGGAGGTGGAGGTGGTGGCGGTGGAGGTCGAATAAGTGGTGGAAGTTCACCTCGC 744
Query 644 AGACACGTGCAGAGGGCTAGATCGAGTGATGATGGGAAAGAGGATATTGAACATACAGGT 703
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 AGACATGTGCAGAGGGCTAGATCGAGTGATGATGGGAAAGAGGATATTGAACATACAGGT 804
Query 704 ATCTTGAGACTTAGAGGATTACCGTTCTCAGCAGGAAAGGAAGACATACTTGACTTCTTC 763
| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 805 ACCTTGAGACTGAGAGGATTACCTTTCTCAGCAGGAAAGGAAGACATACTTGACTTCTTC 864
Query 764 AAAGATTTCGAGCTGTCTGAAGACTTTGTTCATGTTACTGTTAATGGTGAAGGGAGACCC 823
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 865 AAAGATTTCGAGCTGTCTGAAGACTCTGTTCATGTGACTGTTAATGGTGAAGGGAGACCC 924
Query 824 ACTGGGGAAGCTTTTGTGGAGTTTAGGAATGCAGAAGATTCACGAGCTGCAATGGTTAAG 883
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 925 ACTGGGGAAGCATTTGTGGAGTTTAGGAATGCAGAAGATTCGCGAGCTGCAATGGTCAAG 984
Query 884 GATAGGAAGACGCTTGGCAGCCGTTACATAGAATTGTTTCCTTCATCGGTTGAGGAGTTA 943
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 985 GATAGGAAGACGCTTGGGAGCCGTTACATAGAATTGTTTCCTTCATCGGTTGAAGAGTTA 1044
Query 944 GAGGAGGCACTATCAAGAGGAAGATGA 970
||||||||||||||||||||||| |||
Sbjct 1045 GAGGAGGCACTATCAAGAGGAAGGTGA 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36026156565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5