BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G20898.1

Length=871
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479617 jgi|Araly1|479617|fgenesh2_kg.3__2318__AT3G20900.1         196    2e-49


> Ahg479617 jgi|Araly1|479617|fgenesh2_kg.3__2318__AT3G20900.1
Length=273

 Score =  196 bits (106),  Expect = 2e-49
 Identities = 121/128 (95%), Gaps = 2/128 (2%)
 Strand=Plus/Minus

Query  270  GGTTGTTGTACCCCGAAAGCCAAGAAGTCTAGGATACCGGAGATGCTGACGTGTCCACCG  329
            ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  209  GGTTGTTGTACTCCAAAAGCTAAGAAGTCTAGGATACCGGAGATGCTGACGTGTCCACCG  150

Query  330  GCGCCGAAGAAGCAAAGGGTCTCGAAA-AACTGTGTGTTACGACGGAGACAGATCGTTTT  388
            ||||||||||||||||||||| | ||| ||||||||||||||||||||| ||||||||||
Sbjct  149  GCGCCGAAGAAGCAAAGGGTCAC-AAAGAACTGTGTGTTACGACGGAGAAAGATCGTTTT  91

Query  389  CTTTGCTC  396
            ||||||||
Sbjct  90   CTTTGCTC  83



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32251987782


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5