BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20898.1 Length=871 Score E Sequences producing significant alignments: (Bits) Value Ahg479617 jgi|Araly1|479617|fgenesh2_kg.3__2318__AT3G20900.1 196 2e-49 > Ahg479617 jgi|Araly1|479617|fgenesh2_kg.3__2318__AT3G20900.1 Length=273 Score = 196 bits (106), Expect = 2e-49 Identities = 121/128 (95%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 270 GGTTGTTGTACCCCGAAAGCCAAGAAGTCTAGGATACCGGAGATGCTGACGTGTCCACCG 329 ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 209 GGTTGTTGTACTCCAAAAGCTAAGAAGTCTAGGATACCGGAGATGCTGACGTGTCCACCG 150 Query 330 GCGCCGAAGAAGCAAAGGGTCTCGAAA-AACTGTGTGTTACGACGGAGACAGATCGTTTT 388 ||||||||||||||||||||| | ||| ||||||||||||||||||||| |||||||||| Sbjct 149 GCGCCGAAGAAGCAAAGGGTCAC-AAAGAACTGTGTGTTACGACGGAGAAAGATCGTTTT 91 Query 389 CTTTGCTC 396 |||||||| Sbjct 90 CTTTGCTC 83 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32251987782 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5