BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20910.1
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930040 jgi|Araly1|930040|scaffold_302497.1 1500 0.0
> Ahg930040 jgi|Araly1|930040|scaffold_302497.1
Length=948
Score = 1500 bits (812), Expect = 0.0
Identities = 900/941 (96%), Gaps = 11/941 (1%)
Strand=Plus/Plus
Query 108 GATTGAATGGGAATTGAAGACATGCATTCAAAATCTGACAGTGGTGGGAACAAGGTTGAT 167
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 18 GATTGAATGGGAATTGAAGACATGCATTCAAAATCTGACA---GTGGGAACAAGATTGAT 74
Query 168 TCAGAGGTTCATGGTACAGTATCGTCGTCGATAAATAGTTTAAACCCTTGGCATCGTGCT 227
|||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct 75 TCAGAGGTTCATGGTACATTACCGTCGTCTATAAATAGTTTAAACCCTTGGCATCGTGCT 134
Query 228 GCTGCTGCTTGCAATGCAAATTCTAGTGTGGAAGCTGGAGATAAATCTTCTAAGTCAATA 287
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 135 GCTGCTGCTTGCAATGCAAATTCTTGTGTGGAAGCTGGAGATAAATCTTCTAAGTCAATA 194
Query 288 GCATTAGCATTGGAATCAAACGGTTCCAAATCACCATCCAATAGAGATAATACTGTTAAC 347
||||||||||||||||||||||| || || |||||||| ||||||||| ||| ||||||
Sbjct 195 GCATTAGCATTGGAATCAAACGGCTCGAAGTCACCATCAAATAGAGATGATAATGTTAAT 254
Query 348 AAGGAATCACAAGTCACAACGTCTCCACAATCAGCTGGAGATTATAGTGATAAAAACCAA 407
|| ||||||||||||||||||||||| ||||||||| | | | ||||||||||| |||
Sbjct 255 AAAGAATCACAAGTCACAACGTCTCCCCAATCAGCT-G-G---A-AGTGATAAAAATCAA 308
Query 408 GAATCTCTGCATCATGGCATCACACAACCTCCTCCTCACCCTCAACTTGTTGGCCAC-AC 466
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 309 GAATCTCTGCATCCTGGCATCACACAACCTCCTCCTCACCCTCAACTTGTTGGCC-CGAC 367
Query 467 AGTTGGATGGGCATCCTCAAATCCATACCAGGATCCATATTATGCAGGAGTGATGGGAGC 526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 AGTTGGATGGGCATCCTCAAATCCATACCAGGATCCATATTATGCAGGAGTGATGGGAGT 427
Query 527 CTATGGACATCATCCCCTGGGGTTTGTTCCATATGGTGGGATGCCTCATTCAAGAATGCC 586
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 428 CTATGGACATCATCCCTTGGGTTTTGTTCCATATGGTGGGATGCCTCATTCAAGAATGCC 487
Query 587 ACTGCCGCCTGAGATGGCACAAGAACCAGTTTTCGTGAATGCTAAACAGTACCAGGCGAT 646
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 488 ACTGCCTCCTGAGATGGCACAAGAACCCGTTTTCGTGAATGCTAAACAGTACCAGGCGAT 547
Query 647 TCTGAGGCGAAGGCAGGCACGCGCCAAGGCAGAGCTAGAGAAGAAGCTAATAAAATCCAG 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TCTGAGGCGAAGGCAGGCACGCGCCAAGGCAGAGCTAGAGAAGAAGCTAATAAAATCCAG 607
Query 707 AAAGCCTTATCTACATGAATCTCGGCATCAACATGCTATGAGGAGGCCAAGGGGTACTGG 766
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 AAAGCCTTATCTCCATGAATCTCGGCATCAACATGCTATGAGGAGGCCAAGGGGTACTGG 667
Query 767 AGGACGGTTTGCAAAGAAAACCAACACCGAAGCTTCAAAGCGTAAAGCTGAAGAAAAGAG 826
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 668 AGGACGGTTTGCAAAGAAAACCAACACCGAAGCTTCAAAGCGCAAAGTTGAAGAAAAGAG 727
Query 827 CAATGGTCATGTTACTCAGTCCCCGTCATCATCTAATTCTGATCAAGGTGAAGCTTGGAA 886
|||||||| |||||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct 728 CAATGGTCGTGTTACGCATTCCCCGACATCATCTAATTCTGATCAAGGTGAAGCTTGGAA 787
Query 887 TGGTGACTATAGAACACCTCAGGGAGATGAGATGCAGAGCTCAGCTTATAAGAGAAGGGA 946
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 788 TGGTGACTATAGAACACCTCAGGGCGATGAGATGCAGAGCTCAGCTTATAAGAGAAGGGA 847
Query 947 AGAAGGAGAGTGTTCAGGGCAGCAATGGAACAGCCTTTCCTCAAACCATCCTTCTCAAGC 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 AGAAGGAGAGTGTTCAGGGCAGCAATGGAACAGCCTTTCCTCAAACCATCCTTCTCAAGC 907
Query 1007 TCGTCTAGCCATTAAATGACCTCACAAGGCGGCAATTCATT 1047
||||||||||||||||||||| |||||||||||||||||||
Sbjct 908 TCGTCTAGCCATTAAATGACCCCACAAGGCGGCAATTCATT 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014360819
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5