BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20930.1
Length=1423
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479621 jgi|Araly1|479621|fgenesh2_kg.3__2322__AT3G20930.1 1733 0.0
> Ahg479621 jgi|Araly1|479621|fgenesh2_kg.3__2322__AT3G20930.1
Length=1151
Score = 1733 bits (938), Expect = 0.0
Identities = 1087/1157 (94%), Gaps = 18/1157 (2%)
Strand=Plus/Plus
Query 1 AAGCAAAAAAGAGTTGCCATGGAAGCTCTTATTGCTTCCACTTCCTTCTTCGTCCCCATC 60
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1 AAGCAAAAAAGAGTTGCCATGGAAGCTCTTATTGCTCCCACTTCCTTCTTCCTCCCCATC 60
Query 61 TCCAACTCTTCCTCCTCACACATTATCAATAACAGATTCTTCCCTTCATTTTATTCTCCC 120
|||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 TCCAACTC-T--TCCTCACACATTATCAATAACAGATTCTTCCCTTCATTTTCTTCTCCC 117
Query 121 AACTTAAATTTCGGGACTTTTCGGAAAAC---T---TCCTTGTCATCATCACACCTCGTC 174
||||||||||| ||||||||||||||||| | ||||||||| |||||||| |||||
Sbjct 118 AACTTAAATTTGGGGACTTTTCGGAAAACTTATACCTCCTTGTCACCATCACACATCGTC 177
Query 175 TTCTCATCTTCTGCAATTTCCGCACCGCCTTCTTCTACTG-TTC-T-TACTCGAAACAGC 231
||||| |||||||||||||||||||| ||||||||||||| | | | ||| |||||||||
Sbjct 178 TTCTCCTCTTCTGCAATTTCCGCACCACCTTCTTCTACTGCTCCTTCTACCCGAAACAGC 237
Query 232 TATTGGATGGTGTTATTGGATAAACCTCCGCATTGGGTTTCTTCCAAATCAGCCATGGTA 291
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||
Sbjct 238 TATTGGATGGTGTTATTGGATAAACCTCCGCAATGGGTTTCTTCCAAATCAGACATCGTT 297
Query 292 GATTATTATGTCGAGATTCTTGCGAAAGTACTGGGAAACGAAAAAGATGCGCAAGTGAGT 351
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 298 GATTATTATGTCGAGATTCTTGCGAAAGTACTGGGAAACGAAAAAGATGCCCAAGTGAGT 357
Query 352 ATATATGATGCTTCCTTTGATACCCATTTCGGGTTTTGTTGTCATATCGACGAAGATGCT 411
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATATATGATGCTTCCTTTGATACCCATTTCGGGTTTTGTTGTCATATCGACGAAGATGCC 417
Query 412 TCACGACAGCTCGCTAGTTTACCTGGAGTAGTGTCTATTAGACCTGAA-CAGGATTACAG 470
||||| ||||||||| |||||||||||||||||||| ||||||||||| | || ||||||
Sbjct 418 TCACGCCAGCTCGCTTGTTTACCTGGAGTAGTGTCTGTTAGACCTGAAGC-GGGTTACAG 476
Query 471 TTCAGAGAAGAAGAATTATGGCATTGGTAGCCATAAAGGTGTTTCATTGTTTGATCATGG 530
||||||||||||||||||||| |||| | || | | ||||||||||||||||||||||
Sbjct 477 TTCAGAGAAGAAGAATTATGGTTTTGGGAATCAGACATGTGTTTCATTGTTTGATCATGG 536
Query 531 GACAGTAAAACATTGGATGG-TACGAATAGATAAGCCAGGAGTTGGGATTGTTACTAAAG 589
|||||| ||||||||||||| || |||||||||||||||||||||| |||||||||||||
Sbjct 537 GACAGTGAAACATTGGATGGTTA-GAATAGATAAGCCAGGAGTTGGAATTGTTACTAAAG 595
Query 590 CACAGATGGTTGATCATTGTGTTCAATTGCTATCCAAGGTTTTGTGGAATGAGAAGGATG 649
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 596 CACAGATGGTTGATCATTGTGTTCAATTGCTATCCAAGGTTTTGTGCAATGAAAAGGATG 655
Query 650 CACAGATGTGTCTTTATCATGTTTCCTGGCAGTCTGATTTCGGATTTTGTTGTGATCTCG 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CACAGATGTGTCTTTATCATGTTTCCTGGCAGTCTGATTTCGGATTTTGTTGTGATCTCG 715
Query 710 ATGA-AAGAAGTGCTGTGGAGTTAGCTGGCGTACCTGGTGTTCTTGCTGTTGTTCCTGAT 768
|||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 716 ATGAGAA-CAGTGCCGTGGAGTTAGCTGGCGTACCTGGTGTTCTTGCGGTTGTTCCTGAT 774
Query 769 AACAGTTTCGAGTCACTAAACAAAGACTATGAAGGCGATAGTACGCAAGATTCAAGAGAT 828
|||||||||||||||||||||||| |||||||||| |||||||| |||| |||| |||||
Sbjct 775 AACAGTTTCGAGTCACTAAACAAACACTATGAAGGGGATAGTACACAAGCTTCACGAGAT 834
Query 829 CAAGATGATTCAGAGTCTCCTCCCGTAAAGACAAAGAAGCTGTTTATAACTGGACTGTCT 888
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 835 CAAGATGATTCAGAGTCTCCTCCCGTAAAGACGAAGAAGCTGTTTATAACTGGACTGTCT 894
Query 889 TTCTACACATCTGAGAAGACATTACGTGCAGCATTTGAAGGGTTTGGTGAACTAGTGGAA 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TTCTACACATCTGAGAAGACATTACGTGCAGCATTTGAAGGGTTTGGTGAACTAGTGGAA 954
Query 949 GTCAAAATAATTATGGACAAAATATCGAAGAGATCAAAGGGCTATGCCTTTCTAGAGTAC 1008
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 955 GTCAAAATAATTATGGACAAGATATCAAAGAGATCAAAAGGCTATGCCTTTCTAGAGTAC 1014
Query 1009 ACGACAGAGGAAGCCGCAGGCACTGCACTAAAAGAGATGAATGGAAAGATTATCAACGGG 1068
|||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||
Sbjct 1015 ACGACAGAGGAAGCCGCAAGCACTGCACTAAAAGAGATGAATGGAAAGATTATTAATGGG 1074
Query 1069 TGGATGATAGTAGTAGATGTAGCCAAGACCAAACCGTTCAGGCAAAACAGAAGTCAACCA 1128
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1075 TGGATGATAGTAGTAGATGTAGCCAAGACCAAACCATTCAGGCAAAACAGAAGTCAACTG 1134
Query 1129 AGTTTCGGGCTCTAGAA 1145
||||| ||| |||||||
Sbjct 1135 AGTTTGGGGTTCTAGAA 1151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212072265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5