BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20960.1
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946792 jgi|Araly1|946792|scaffold_703021.1 1123 0.0
Ahg930044 jgi|Araly1|930044|scaffold_302501.1 981 0.0
Ahg493358 jgi|Araly1|493358|fgenesh2_kg.7__2791__AT4G15350.1 907 0.0
Ahg479531 jgi|Araly1|479531|fgenesh2_kg.3__2232__AT3G20080.1 800 0.0
Ahg479532 jgi|Araly1|479532|fgenesh2_kg.3__2233__AT3G20140.1 483 2e-135
Ahg480132 jgi|Araly1|480132|fgenesh2_kg.3__2833__AT2G05190.1 270 2e-71
Ahg933050 jgi|Araly1|933050|scaffold_401038.1 198 9e-50
> Ahg946792 jgi|Araly1|946792|scaffold_703021.1
Length=1318
Score = 1123 bits (608), Expect = 0.0
Identities = 1037/1243 (83%), Gaps = 33/1243 (3%)
Strand=Plus/Plus
Query 214 ACGAGGTCTTC-AGGATCCACGACATGAACATCTCCTCTCGCGGTGCTGCTGCGATCGAT 272
||||| ||||| ||| ||| ||| ||||| ||||| |||||||| || |||| | |||
Sbjct 28 ACGAGATCTTCAAGG-CCCATGACGTGAACGTCTCCACTCGCGGTATTGTTGCGCTTGAT 86
Query 273 GAGTCCCTCGTGTTTGGATCTTCTGGTGTCGTCTACGCTCCCTATGGAGATTACTTGAAG 332
||||| ||| ||||||| ||||||| || | ||||||||||||||||||||| ||||
Sbjct 87 GAGTCTCTCATGTTTGGGGCTTCTGGCATCTTGAACGCTCCCTATGGAGATTACTGGAAG 146
Query 333 TTCGTGAAGAAGATCATTGCCACTAAGCTGCTTCGACCTCAGGTGTTGGAGCGGTCACGA 392
||| |||||||| |||| ||||||||||| || ||||| || ||| ||||||||||||||
Sbjct 147 TTCATGAAGAAGCTCATGGCCACTAAGCTACTCCGACCGCAAGTGCTGGAGCGGTCACGA 206
Query 393 GGTCTTCGTGCTGAAGAGCTACAACGACTTTACAACAGAATTCTTGATAAGGCGAAGATG 452
||| |||||| |||||| ||||| || |||||| || ||||| |||||||| | || |
Sbjct 207 GGTATTCGTGTTGAAGAACTACAGCGGTTTTACAGGAGCATTCTCGATAAGGCCACGAAG 266
Query 453 AATGAGAACGTTGAGATCGGTAAGGAAGCGACGATGCTCATGAACAACATCTTCTGTAGG 512
||||||| ||||||||| ||||| ||||| | || |||||||||||||| ||| ||||
Sbjct 267 AATGAGAGCGTTGAGATTGGTAAAGAAGCAATGAAGCTCATGAACAACACCTTGTGTAAA 326
Query 513 ATGAGCATGGGAAGGAGTTTCTCAGAGGAGAATGGTGAGGCAGAGAGAGTCAGAGGCTTG 572
|||| ||||||||||||||| |||||||| || ||||| || | |||||||| ||||||
Sbjct 327 ATGATCATGGGAAGGAGTTTTTCAGAGGACAACGGTGAATCAAATAGAGTCAGGGGCTTG 386
Query 573 GTGGCTGAATCATATGCCTTGGCGA-AGAAGATTTTCTTCGCATCTGTACTGCGCAGA-C 630
|| | |||| | ||||| ||| | | ||||||| ||||| ||| || || |||||||| |
Sbjct 387 GTTGATGAAACGTATGCTTTGTC-AGAGAAGATATTCTTGGCAGCTATATTGCGCAGACC 445
Query 631 TGCTTAAGAAGCTTCGGATCCCACTATTCAAGAAGGATATCATGGATGTTTCCAACAGAT 690
| ||| ||||||||||||| ||||||||||||| | || |||| ||||||||||| ||
Sbjct 446 T-CTTGCGAAGCTTCGGATCTCACTATTCAAGAAACAGATAATGGGTGTTTCCAACAAAT 504
Query 691 TCAATGAGCTGCTAGAGAAGATTCTTGTGGAACACAATGAGAAACTGGACGAG--GAA-C 747
|| ||||||||||||||||||||||| ||||||||| ||||||||||| ||| ||| |
Sbjct 505 TCGATGAGCTGCTAGAGAAGATTCTTCAGGAACACAAAGAGAAACTGGAAGAGAAGAATC 564
Query 748 ATAAAGACACGGATATGATGGACGTGTTGTTGGCAGCTTATGCAGATGAAAACGCTGAGT 807
|| ||| | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 565 ATGAAGGTATGGATATGATGGACGTGTTGTTGGCAGCTTATGGAGATGAAAACGCTGAGT 624
Query 808 ATAAGATTAC-TAGGAATCATATCAAGTCATTTTTCGTGGAGCTTTTCGTGGGAGGCACT 866
||||||| || | |||| ||||||||| |||||||||||||| ||||| | |||||||||
Sbjct 625 ATAAGATCACAT-GGAAGCATATCAAGGCATTTTTCGTGGAGTTTTTCATTGGAGGCACT 683
Query 867 GATACCTCGGTGCAAACAACACAATGGACAATGGCCGAGATCATTAATAACTCT-GACGT 925
|||||||| |||||||||||||| ||| ||||||||||||| || || || ||| | ||
Sbjct 684 GATACCTCAGTGCAAACAACACAGTGGGCAATGGCCGAGATGATCAACAATTCTAGT-GT 742
Query 926 TCTTGAGAGGCTGAGAGAAGAAATTGACTCTGTTGTAGGG-ACATCAAGAATGATTCAAG 984
|||||| || |||||||||||||| | ||| ||||||||| | | |||| |||| ||||
Sbjct 743 TCTTGATAGACTGAGAGAAGAAATCGTCTCCGTTGTAGGGGAAA-CAAGGTTGATCCAAG 801
Query 985 AAACAGATATACCAAACCTTCCTTATTTGCAAGCGGTGGTTAAGGAAGGACTAAGATTGC 1044
|||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 802 AAACAGATTTACCAAACCTTCCTTATTTGCAAGCAGTGGTTAAGGAAGTTCTAAGATTGC 861
Query 1045 ACCCACCATTTCCTCTCTTGACGA-GGAAGTTTGAAGAAAGGTGTGA-GATCAAAGGGTT 1102
||||||||| || |||| | | ||||||| |||||| ||||| | ||||||| ||
Sbjct 862 ACCCACCATCACCGGTCTTAAT-ACGGAAGTTCCAAGAAAAATGTGAAG-TCAAAGGATT 919
Query 1103 CTACATCCCGGAGAAGACATTTCTTATTATAAATGCTTACGCT-TGGATGAGAGATCCTG 1161
| ||| |||||||||||| || ||| | |||||||| ||| || ||||||||| ||
Sbjct 920 TTGCATACCGGAGAAGACAACACTCATTGTTAATGCTTATGCTGTG-ATGAGAGATTATG 978
Query 1162 ATTCCTGGGAAGATCCT-AATGAGTTTAAGCCGGAGAGGTTTTTAGGTTCTTCAAGATTA 1220
|||| |||||||||||| || | |||||||| |||||||||||| ||| |||||||| |
Sbjct 979 ATTCTTGGGAAGATCCTGAAAAA-TTTAAGCCAGAGAGGTTTTTAAGTTTTTCAAGATCA 1037
Query 1221 GGACAAGTAG-ACGAGAGAGAGGAAG--CTCAGAAGTACATTCCTTTCGGCGGAGGAAGG 1277
|| |||| || |||||| |||| ||| || || |||| ||||||| ||| | ||||||
Sbjct 1038 GGGCAAG-AGGACGAGAAAGAGCAAGAACTTAG--GTACCTTCCTTTTGGCAGCGGAAGG 1094
Query 1278 AGAGGCTGTCCTGGAGCAAATCTAGCTTCTAT-TTTCGTAGGAACCGCGATT-GGAGTGA 1335
||||| ||||||||||||||||| | |||||| ||| ||||||||||| | | |||||||
Sbjct 1095 AGAGGATGTCCTGGAGCAAATCTTGGTTCTATATTT-GTAGGAACCGC-AGTAGGAGTGA 1152
Query 1336 TGGTGCAGTGCTTTGACTGGGGAATCAAAGGAGATAAGATCAACATGGAAGAGACTTTTG 1395
|||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||
Sbjct 1153 TGGTGCAGTGCTTTGATTGGAAAATCAAAGAAGATAAGGTCAACATGGAAGAGACTTTTG 1212
Query 1396 AAGGACTGACCCTTACCATGGTTCATCCAATTAAGTGCACTCC 1438
||||| ||||||| | |||||||| || ||| |||||||||
Sbjct 1213 AAGGAATGACCCTGAAAATGGTTCACCCCCTTATGTGCACTCC 1255
> Ahg930044 jgi|Araly1|930044|scaffold_302501.1
Length=944
Score = 981 bits (531), Expect = 0.0
Identities = 603/637 (95%), Gaps = 8/637 (1%)
Strand=Plus/Plus
Query 843 GTGGAGCTTTTCGTGGGAGGCACTGATACCTCGGTGCAAACAACACAATGGACAATGGCC 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGGAGCTTTTCGTGGGAGGCACTGATACCTCGGTGCAAACAACACAATGGACAATGGCC 360
Query 903 GAGATCATTAATAA-CTCTGACGTTCTTGAGAGGCTGAGAGAAGAAATTGACTCTGTTGT 961
|||||||||||||| | |||||||||||| |||||||||||||||||| || || | |||
Sbjct 361 GAGATCATTAATAAGC-CTGACGTTCTTGTGAGGCTGAGAGAAGAAATCGATTCCGCTGT 419
Query 962 AGGGACATCAAGAATGATTCAAGAAACAGATATACCAAACCTTCCTTATTTGCAAGCGGT 1021
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGGGACATCAAGGTTGATTCAAGAAACAGATATACCAAACCTTCCTTATTTGCAAGCGGT 479
Query 1022 GGTTAAGGAAGGACTAAGATTGCACCCACCATTTCCTCTCTTGACGAGGAAGTTTGAAGA 1081
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 480 GGTTAAGGAAGGACTAAGATTGCACCCACCATTTCCTCTCCTGACGAGGAAGTTTGAAGA 539
Query 1082 AAGGTGTGAGATCAAAGGGTTCTACATCCCGGAGAAGACATTTCTTATTATAAATGCTTA 1141
||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||
Sbjct 540 AAGGTGTGAGATCAAAGGGTTCTACATTCCGGAGAAGACATTTCTTGTTATTAATGCTTA 599
Query 1142 CGCTTGGATGAGAGATCCTGATTCCTGGGAAGATCCTAATGAGTTTAAGCCGGAGAGGTT 1201
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGCTTGGATGAGAGATCCTGATTCCTGGGAAGATCCTAATGAGTTTAAGCCGGAGAGGTT 659
Query 1202 TTTAGGTTCTTCAAGATTAGGACAAGTAGACGAGAGAGAGGAAGCTCAGAAGTACATTCC 1261
| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 660 TCTAGGTTCTTCAAGATTAGGACAAGAAGACGAGAGGGAGGAAGCTCAGAAGTACATTCC 719
Query 1262 TTTCGGCGGAGGAAGGAGAGGCTGTCCTGGAGCAAATCTAGCTTCTATTTTCGTAGGAAC 1321
||||||||| ||||||||||||||||||||| | |||||||||||||||||| |||||||
Sbjct 720 TTTCGGCGGCGGAAGGAGAGGCTGTCCTGGATCTAATCTAGCTTCTATTTTCATAGGAAC 779
Query 1322 CGCGATTGGAGTGATGGTGCAGTGCTTTGACTGGGGAATCAAAGGAGATAAGATCAACAT 1381
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 780 CGCGATTGGAGTGATGGTGCAGTGCTTTGACTGGGGAATCAAAGGAGATAAGGTCAATAT 839
Query 1382 GGAAGAGACTTTTGAAGGACTGACCCTTACCATGGTTCATCCAATTAAGTGCACTCC-GA 1440
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 840 GGAAGAGACTTTTGAAGGACTGACCCTTACCATGGTTCATCCACTTAAGTGCACTCCAG- 898
Query 1441 TTCCTCGAAC--A-CTGCCTTTTGTAACTTCTAATCT 1474
|||||||||| | || ||||| |||||| || |||
Sbjct 899 TTCCTCGAACCCAACTTTCTTTT-TAACTTGTATTCT 934
Score = 313 bits (169), Expect = 3e-84
Identities = 195/208 (94%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 1 GTTATTCTCTCTTCTTCAAGAAACCAAAGGACTCACGAGGCTGTGATCTACCTCCCAGCC 60
|||| ||| |||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 95 GTTACTCTATCTTTTTCAAGAAACCAAAGGACTCACGAGGCTGTAATCTACCTCCCAGCC 154
Query 61 CTCCGTCTCTTCCGATTATCGGTCATCTTCACCTTCTCCTCTCTTCTCTATCCCACAAGT 120
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 CTCCGTCTCTTCCAATCATCGGTCATCTTCACCTTCTCCTCTCTTCTCTATCCCACAAGT 214
Query 121 CTTTACAGAAAATCTCCTCTAAGTATGGACCTCTCCTCCATCTCCGGATCTTTAATGTCC 180
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 215 CTTTACAGAAAATCTCCTCTAAGTATGGACCCCTCCTCCATCTCCGGATTTTTAACGTCC 274
Query 181 CCATCATCCTCGTTTCATCGGCTTCAGT 208
|||||||||| ||||| || || |||||
Sbjct 275 CCATCATCCTTGTTTCGTCTGCCTCAGT 302
> Ahg493358 jgi|Araly1|493358|fgenesh2_kg.7__2791__AT4G15350.1
Length=1564
Score = 907 bits (491), Expect = 0.0
Identities = 1178/1499 (79%), Gaps = 89/1499 (6%)
Strand=Plus/Plus
Query 1 GTTATTCTCTCTTCTTCAAGAAACCAAAGGACTCACGAG--G-CTGTGATCTACCTCCCA 57
|||| ||||||||||||| |||||||||||||||||||| | | |||| || ||||| |
Sbjct 50 GTTACTCTCTCTTCTTCATGAAACCAAAGGACTCACGAGATGACCGTGACCTTCCTCCGA 109
Query 58 GCCCTCCGTCTCTTCCGATTATCGGTCATCTTCACC---TTCTCCTCTCTTCTCTATCCC 114
| ||||| |||||||| || |||||||||||||||| |||| |||||| || || |||
Sbjct 110 GTCCTCCTTCTCTTCCTATCATCGGTCATCTTCACCTAATTCTTCTCTCTACTTTAACCC 169
Query 115 ACAAGTCTTTACAGAAAATCTCCTCTAAGTATGGACCTCTCCTCCATCTCCGGATCTTTA 174
|||||||||| |||| | |||| || |||||||||||||| ||||||||||| |||||
Sbjct 170 ACAAGTCTTTTCAGAGACTCTCATCCAAGTATGGACCTCTTCTCCATCTCCGCATCTTCC 229
Query 175 ATGTCCCCATCATCCTCGTTTCATCGGCTTCAGTTGCAGACGAGGTCTTCA-GGATCCAC 233
| || ||||| ||||||| || ||||| ||||| || |||| |||||| ||| |||
Sbjct 230 ACGTTCCCATTGTCCTCGTCTCCTCGGCCTCAGTGGCCTACGATATCTTCAGGGA-CCAA 288
Query 234 GACATGAACATCTCCTCTC-GCGGTGCTGCTGCGATCGATGAGTCCCTCGTGTTT-GGAT 291
||| |||| | |||| || || | | || ||||||| ||||| ||| | ||| ||||
Sbjct 289 GACGTGAATGTATCCTTTCGGC-ATTCCCCTCCGATCGAGGAGTCTCTC-TTTTTGGGAT 346
Query 292 CTTCT-GGTGTCGTCTA-CGCTCCCTATGGAGATTACTTGAAGTTCGTGAAGAAGATCAT 349
| | | | | || || | |||||| ||||||||||||| ||| ||| ||| |||| ||||
Sbjct 347 CGTATAGCT-TCATC-AGCGCTCCTTATGGAGATTACTGGAAATTCATGAGGAAGCTCAT 404
Query 350 TGCCACTAAGCTGCTTCGACCTCAGGTGTTGGAGCGGTCACG-AGGTCTTCGTGCTGAAG 408
| || ||| | ||| |||| || | | |||||||||| || | | |||| || |
Sbjct 405 GGTTACAAAGATTCTTGGACCGCAAGCACTCCAGCGGTCACGAAGAT-TCCGTGAAGATG 463
Query 409 AGCTACAACGACTT-TACAACAGAAT-T-CTTGATAAGGCGAAG-ATGAATGAGAACGTT 464
|||| | || || ||||| | ||| | || ||||||||| || | ||| |||| |||
Sbjct 464 AGCTTGATCG-GTTCTACAA-A-AATCTACTCGATAAGGCG-AGTAAGAAGGAGATTGTT 519
Query 465 GAGATCGGTAAGGAAGCGA-CGATGCTC-ATGAACAACATCTTCTGTAGGATGAGCATGG 522
||||||||| ||||||| | ||| |||| || ||||||| | |||| | ||||| |||||
Sbjct 520 GAGATCGGTGAGGAAGC-AGCGAAGCTCAAT-AACAACACCATCTGCAAGATGATCATGG 577
Query 523 GAAGGAGTT-TCTCAGAGGAGAATGGTGAGGCAGAGAGAGTCAGAGGCTTGGTGGCTGAA 581
| ||||||| | || ||||||| |||||||||||||| ||||||||||||||| ||||
Sbjct 578 GGAGGAGTTGT-TCTGAGGAGAGCGGTGAGGCAGAGAGGGTCAGAGGCTTGGTGACTGAG 636
Query 582 TCATAT-GCCTTGGCGAAGAAGATTTTCTT--CG--CATCTGTACTGCGCAGACTGCTTA 636
||| || |||||| | ||||| |||||||| || ||||| | || || || ||||
Sbjct 637 TCA-ATGGCCTTGACAAAGAAAATTTTCTTGGCGACCATCT-T--TG-ACAAACCACTTA 691
Query 637 AGAAGCTTC-GGATCCCACTATTCAAGAAGGATATCATGGA-TGTTTCCAAC-AGATTCA 693
|||||| || ||||| |||| ||||| ||||| || || || ||||||| || || |||
Sbjct 692 AGAAGC-TCGGGATCTCACTGTTCAAAAAGGAGATAAT-GAGTGTTTCCCACAAG-TTCG 748
Query 694 ATGAGCTGCTAGAGAAGATTCTTGTGGAACACAATGAGAAACTGGACGAGGAACATAAAG 753
| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 749 ACGAGCTGCTAGAGAAGATTCTTGTGGAACACAAAGAGAAACTGGACGAGGATCATCAAG 808
Query 754 ACACGGATATGATGGACGTGTTGTTGGCAGCTTATGCAGATGAAAACGCTGAGTATAAGA 813
|| || |||||||| |||||||||| ||||||| ||| |||||||| |||||||| |
Sbjct 809 GTACTGACATGATGGATGTGTTGTTGGAAGCTTATAAAGACGAAAACGCAGAGTATAAAA 868
Query 814 TTACTAGGAATCATATCAAGTCATT-TTTCGTGGAGCTTTTCGTGGGAGGCACTGATACC 872
| || || || ||||||||||| || ||| ||||| |||||| | | ||||||||| |||
Sbjct 869 TCACAAGAAACCATATCAAGTCCTTGTTT-GTGGAACTTTTCATTGCAGGCACTGACACC 927
Query 873 TCGGTGCAAACA--ACACAATGGA-CAATGGCCGAGATCATTAATAACTCTGACG-TTCT 928
|| | | | || | ||| |||| || |||| ||||||||||| | || | | ||||
Sbjct 928 TCA-T-CGACCACTATACAGTGGATCA-TGGCGGAGATCATTAACCA-TCCCAAGATTCT 983
Query 929 TGAGAGGCTGAGAGAAGAAATTGACTCTGTTGTAGGGACAT-CAAGAATGATTCAAGAAA 987
|||||| || ||||||||||| | || |||||||||| | || || ||||||||||||
Sbjct 984 TGAGAGACTAAGAGAAGAAATCAATTCCGTTGTAGGGAAAAGCA-GATTGATTCAAGAAA 1042
Query 988 CAGA-TATACCAAACCTTCCTTATTTGCAAGCGGTGGTTAAGGAAGGACTAAGATTGCAC 1046
| || | |||| ||||| ||||| |||||||| | | || ||||| |||||||||||
Sbjct 1043 CTGACT-TACCCAACCTCCCTTACTTGCAAGCAATAATCAAAGAAGGGCTAAGATTGCAT 1101
Query 1047 CCACCATTTCCTCTCTTGACGAGGAA-GTTTGAAGAAAGGTGTGAGATCAAAGGGTTCTA 1105
|| || ||||||||| | || || | | ||||||||||||| || | ||||||| |
Sbjct 1102 CCGCCGGGGCCTCTCTTGCCAAG-AACGGTCCAAGAAAGGTGTGAAATTAGAGGGTTCCA 1160
Query 1106 CATCCCGGAGAAGACATTTCTTATTATAAATGCTTACGCT-TGGATGAGAGATCCTGATT 1164
||| || ||||||||| |||||||| | ||| |||| ||| | ||||||||||||||||
Sbjct 1161 CATACCAGAGAAGACAATTCTTATTGTTAATTCTTATGCTATA-ATGAGAGATCCTGATT 1219
Query 1165 CCTGGGAAGATCCTAATGAGTTTAAGCCGGAGAGGTTTTTAGGTTCTTC-AAGATTAGGA 1223
||||||||||| | |||||||| || |||||||||||||||| ||| ||||| ||||
Sbjct 1220 ATTGGGAAGATCCGGAGGAGTTTAAACCTGAGAGGTTTTTAGGTT-TTCCAAGATCAGGA 1278
Query 1224 CAAGTAG-ACGAGAGA-GAGG-AAGCTC--AGAAGTACATTCCTTTCGGCGGAGGAAGGA 1278
|||| || |||||| | ||| || || | || || |||||||| | | | |||||||
Sbjct 1279 CAAG-AGGACGAGATAAGAGATAAATTCCTAAAA-TATATTCCTTTTGCCAGCGGAAGGA 1336
Query 1279 GAGGCTGTCCTGGAGCAAATCTAGCTTCTATTT-TC-GTAGGAACCGCGATTGGAGTGAT 1336
|||| ||||||||| ||||||||||| | || | || |||||||||||| ||||||||||
Sbjct 1337 GAGGTTGTCCTGGAACAAATCTAGCT-C-ATGTCTCTGTAGGAACCGCGGTTGGAGTGAT 1394
Query 1337 GGTGCAGTGCTTTGACTGGGGAATCAAAGGAGATAA-GATCAACATGGAA-GAGACTTTT 1394
||||||||||||||| ||| |||||||||||| || | |||||||| || ||| || |
Sbjct 1395 GGTGCAGTGCTTTGATTGGAAAATCAAAGGAGAGAAAG-TCAACATG-AATGAGGCTGCT 1452
Query 1395 G-AAGGACTGACCCTT-ACCATGGTTCATCCAATTAAGTGCACTCC-GATTCCTCGAAC 1450
| || | || || ||||||| ||| || ||||||||||||| | ||||||||||
Sbjct 1453 GGAACAA-TGGTG-TTGACCATGGCTCACCCTCTTAAGTGCACTCCTG-TTCCTCGAAC 1508
> Ahg479531 jgi|Araly1|479531|fgenesh2_kg.3__2232__AT3G20080.1
Length=1688
Score = 800 bits (433), Expect = 0.0
Identities = 1167/1508 (77%), Gaps = 104/1508 (7%)
Strand=Plus/Plus
Query 1 GTTATTCTCTCTTCTTCAAGAAACC-AAAGGA-CTC-ACGAGGCTGTGATCTACCTCCCA 57
|||| ||||||||||| | |||||| |||| | ||| || || |||| ||||||| |
Sbjct 93 GTTACTCTCTCTTCTTTAGGAAACCAAAAGAACCTCGACTTCACTTTGATTTACCTCCGA 152
Query 58 GCCCTCCGTCTCTTCCGATTATCGGTCATCTTCACCTTCTCCTCTCT-TCTCT-ATCCCA 115
||||||||||||||||||| |||||||||||||||||||| |||||| | ||| || |||
Sbjct 153 GCCCTCCGTCTCTTCCGATCATCGGTCATCTTCACCTTCTTCTCTCTGT-TCTAAT-CCA 210
Query 116 CAAG-TCTTTACAGAAAATCTCC-TCTAAGTATGGACCTCTCCTCCATCTCCGGATCTTT 173
| || ||||||| |||| ||||| || ||||| ||| || | ||| |||| ||| |||||
Sbjct 211 C-AGATCTTTACTGAAACTCTCCATC-AAGTACGGATCTATTCTCTATCTTCGGGTCTTT 268
Query 174 A-ATGTCCCCATCA-TCCTCGTTTCATCGGCTTCAGTTGCAGACGAGGTCTTCA-GGATC 230
| || |||| | | |||| | || || || ||| |||| | ||| |||||| |||
Sbjct 269 AGAT-TCCCTGT-AGCCCTCATCTCCTCAGCATCAATTGCTTATGAGATCTTCAGGGA-A 325
Query 231 CACGACATGAACATCTCCTCTCGCGG-TGCTGCTGCGATCGATGAGTCCC-TCGTGTTTG 288
|||||| | |||||||| ||||| || | | || ||| |||||| |||| | || |
Sbjct 326 CACGACGTTAACATCTCGTCTCGTGGTTTC-CCTTCGACCGATGATTCCCTTTTTG-CCG 383
Query 289 GATC-TTCTG-GTGTCGTCTACGCTCCCTATGGAGATTACTTGAAGTTCGTGAAGAAGAT 346
|||| ||| | | | ||| ||||||||||||||||||| ||||||| |||||||| |
Sbjct 384 GATCTTTCAGCTTCACATCT--GCTCCCTATGGAGATTACTGGAAGTTCATGAAGAAGCT 441
Query 347 CATTGCCACTAAGC-TGCTTCGA-CCTCAGGTGTTGGAGCGGTCACG-AG-GTCTTCGTG 402
| | | || || | ||||| || || |||| | ||||||||||| || ||| ||||
Sbjct 442 CCTGGTTACGAA-CTTGCTTGGAGCC-CAGGCACTCGAGCGGTCACGAAGAGTC--CGTG 497
Query 403 CTGAAGAGCTACAACGACTTTACAACAGAA-TTCTT-GATAAGGCGAAG-ATGAATGAGA 459
| || |||||| | || ||||| | |||| | || ||||| |||| | || || ||||
Sbjct 498 CAGATGAGCTAGATCGGTTTTAC-A-AGAACCTGTTGGATAAAGCGATGAAT-AAAGAGA 554
Query 460 ACGTTGAGATCGGTAAGGAAGCGACGATGCTCATG-AACAACATCTTCTGTAGGATGAGC 518
||| ||||| || ||||||| || ||||| | ||||||||| |||| | | ||| |
Sbjct 555 GCGTGGAGATATGTGCGGAAGCGTTGAAGCTCA-GTAACAACATCATCTGCAAGTTGATC 613
Query 519 AT-GGGAAGGAGTT-TCTCAGAGGAGAATGGTGAGGCAGAGAGAGTCAGAGGC-TTGG-T 574
|| ||| ||||||| | |||||||||||||||||||| |||| |||||| ||| |||| |
Sbjct 614 ATAGGG-AGGAGTTGT-TCAGAGGAGAATGGTGAGGCGGAGAAAGTCAG-GGCTTTGGCT 670
Query 575 GGCTGAATCATATGCCTTGGCGAAGAAGATTTTCTTCGC-ATC-TGTACTGCGCA-GACT 631
| || | | ||| |||| |||||||||| || || || | | ||| |||| | |
Sbjct 671 -ACCGAGTTAGATGGCTTGACGAAGAAGATCTTATTGGCAAACATGT--TGCG-ACCAGG 726
Query 632 GCTTAAGAAGCTTCG--GATCCCACTATTCAAG-AAGGATATCATGGATGTTTCCAACAG 688
| |||| |||||| | | || |||| || || ||||| || ||||||||||||| ||
Sbjct 727 GTTTAAAAAGCTT-GTTG-TCTCACTGTT-TAGAAAGGAAATGATGGATGTTTCCAGGAG 783
Query 689 ATTCAATGAGCTGCTAGAGAA-GATTCTTGTGGAACA-CAATGAGAAACTGGACGAGG-A 745
||| |||||||||| || || ||| ||||||||||| || || ||||||||| ||| |
Sbjct 784 ATTTGATGAGCTGCTCGA-AAGGATCCTTGTGGAACATGAA-GATAAACTGGAC-AGGCA 840
Query 746 ACATAAAGACACGGA-TATGATGGACGTGTTGTTGGCAGCTTATGC-AGATGAAAACGCT 803
||| ||| || || | | ||||||| |||||||||||||||| | || |||| ||
Sbjct 841 TCATCAAGGTACAGACT-TAATGGACGCGTTGTTGGCAGCTTAT-CGGGACAAAAATGCA 898
Query 804 GAGTATAAGAT-TACTAGGAATCATATCAAGTCATTTTTCGTGGAGCTTTTCGTGGGAGG 862
||||||||||| | ||||||| ||||||||||| ||||||| ||| || || | | |||
Sbjct 899 GAGTATAAGATCT-CTAGGAACCATATCAAGTCGTTTTTCGCGGATCTCTTATTTGCAGG 957
Query 863 CACTGATACCTCGGTGCAAACAACACAATGGACAATGGCCGAGATCATTAATAACTCTGA 922
||| || |||| ||||||||||||||| ||| ||||||| |||||||| || ||| || |
Sbjct 958 CACCGACACCTTGGTGCAAACAACACAGTGGGCAATGGCGGAGATCATGAACAACCCTAA 1017
Query 923 CGTTCTTGAGAGGCTGAGAGAAGAAATTGACTCTGTTGTAGGGACA-TCAAGAATGATTC 981
||||||||||| |||||| ||||||||| || || ||| ||| | ||| | ||||
Sbjct 1018 AGTTCTTGAGAGATTGAGAGGAGAAATTGATTCCGTGGTA-GGAAAGAAAAGGTTAATTC 1076
Query 982 AAGAAACAGATATACCAAACCTTCCTTATTTGCAAGCGGTGGTTAAGGAAGGACTAAGAT 1041
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AAGAAACTGATTTACCAAACCTTCCTTATTTGCAAGCGGTGGTTAAGGAAGGACTAAGAC 1136
Query 1042 TGCACCCACCATTTCCTCTCTTGACGAGGAAG-TT-TG--AAGAAAGGTGTGAG-ATCAA 1096
||||||| || ||||||||| | | ||| || | ||||| ||||| || ||
Sbjct 1137 TGCACCCTCCGGGTCCTCTCTTT--G-G-AAGGTTCTCCCAAGAAGGGTGT-AGGATTGG 1191
Query 1097 AGGGTTCTACATCCC-GGAGAAGACATTTCTTATTATAAATGCTTACGCT-TGGATGAGA 1154
|||||| || | || ||| || ||| | ||||| | |||||||| ||| || ||||||
Sbjct 1192 AGGGTTTTATGTACCAGGAAAA-ACAATACTTATGGTTAATGCTTATGCTGTG-ATGAGA 1249
Query 1155 GATCCTGATTCCTGGGAAGATCCTAATGAGTTTAAGCCGGAGAGGTTTTTAGGTTCTTCA 1214
||| ||||||| ||||||| |||| |||| |||||||| ||||||||| ||| ||| |||
Sbjct 1250 GATTCTGATTCTTGGGAAGTTCCTGATGATTTTAAGCCAGAGAGGTTTCTAGATTCGTCA 1309
Query 1215 AGATTAG-GACAAGTAGACGAGAGA-GAG-G-AAGCTCAG-AAGTACATTCCTTTCGGCG 1269
|||| || | || | | | || ||| ||| | |||| | ||||||||| |||||||
Sbjct 1310 AGATCAGAG-CAGGAAAAGGATAGAAGAGAGCAAGCG-ATTAAGTACATTGCTTTCGGAA 1367
Query 1270 GAGGAAGGAGAGGCTGTCCTGGAGCAAATCTAGCTTCTAT-TTTCGTAGGAACCGCGATT 1328
| ||||| ||| |||||||||||| ||||||||| | ||| ||| ||||||| || |||
Sbjct 1368 GTGGAAGAAGAAGCTGTCCTGGAGAAAATCTAGCATATATCTTTA-TAGGAACTGCAATT 1426
Query 1329 GGAGTGATGGTGCAGTGCTTTGACTGGGGAATCAAAGGAGATAAGATCAACATGGAAGAG 1388
||||||||||| ||| | ||||| ||| ||||||||| ||| || || ||||||||||||
Sbjct 1427 GGAGTGATGGTACAGGGATTTGAGTGGAGAATCAAAGAAGAGAAAATTAACATGGAAGAG 1486
Query 1389 ACTTTTGAAGGACTGACCCTT-ACCATGGTTCATCCAATTAAG-TGCACTCC-GATTCCT 1445
|| ||| |||||||| | || ||||||| |||||| ||||| | |||||| | || ||
Sbjct 1487 ACAGTTGTAGGACTGAGC-TTGACCATGGCTCATCCTCTTAAGAT-CACTCCTG-TTGCT 1543
Query 1446 CGAACACT 1453
||||||||
Sbjct 1544 CGAACACT 1551
> Ahg479532 jgi|Araly1|479532|fgenesh2_kg.3__2233__AT3G20140.1
Length=1489
Score = 483 bits (261), Expect = 2e-135
Identities = 599/757 (79%), Gaps = 44/757 (6%)
Strand=Plus/Plus
Query 7 CTCTCTTCTTCAAGAAACCAAAGGACTCAC---GAGGCTGTGATCTACCTCCCAGCCCTC 63
|||||||||||||||||||||||||||||| | || | |||| | ||||| |||||||
Sbjct 77 CTCTCTTCTTCAAGAAACCAAAGGACTCACAAGGTGGGTTTGATTTGCCTCCAAGCCCTC 136
Query 64 CGTCTCTTCCGATTATCGGTCATCTTCACCTTCTCCTCTCTTCTCTATCCCACAAGTCTT 123
| ||||| || || || ||||||||||| |||||||||||| ||||| |||||||||| |
Sbjct 137 CTTCTCTGCCAATCATTGGTCATCTTCATCTTCTCCTCTCTACTCTAACCCACAAGTCCT 196
Query 124 TACAGAAAATCTCCTCTAAGTATGGACCTCTCCTCCATCTCCGGATCTTTAATGTCCCCA 183
|||||||| ||||||| |||||||||||| ||||||||||||| ||||| ||||||||
Sbjct 197 TACAGAAACTCTCCTCCAAGTATGGACCTTTCCTCCATCTCCGTATCTTCAATGTCCCTG 256
Query 184 TCATCCTCGTTTCATCGGCTTCAGTTGCAGACGAGGTCTTCAGGATC-CACGACATGAAC 242
| ||| | ||||| |||||||| || ||| ||||| |||||||| | || || |||||
Sbjct 257 TAATCTTTGTTTCCTCGGCTTCTGTAGCATACGAGATCTTCAGG-GCACATGATGTGAAC 315
Query 243 ATCTCCTCTCGCGG-TGCTGCTGC-GATCGATGAGTCCCTCGTGTTTGGATCTTCTGG-T 299
||||| | |||||| | || | | || | ||||||||| || ||||||||||||| |
Sbjct 316 ATCTCTTTTCGCGGCAAC-CCTCCTG-TCAAAGAGTCCCTCTTGGTTGGATCTTCTGGCT 373
Query 300 GTCGTCTA-CGCTCCCTATGG-AGATTACTT-GAAGTTCGTGAAGAAGATCATTGCCACT 356
| || | |||||| ||||| | |||| || ||||||| |||| ||| | || | |||
Sbjct 374 -TTTTC-ACCGCTCCTTATGGCA-ATTA-TTGGAAGTTCATGAAAAAGCTAATGGTCACG 429
Query 357 AAGCTGCTTC-GACCTCAGGTGTTGGAGCGGTCACGAGGTC-TTCGTGCTGAAGAGCTAC 414
||||||| || |||| |||| | ||||||||||||| | | ||||| || ||||||
Sbjct 430 AAGCTGC-TCGGACCGCAGGCACTCCAGCGGTCACGAGG-CATCCGTGCAGATGAGCTAG 487
Query 415 AACGACTTTACAA-CAGAATTCTTGATAAGGCGAA-GATGAATGAGAACGTTGAGATCGG 472
|||| ||||||| || ||||||||||||| || || ||| |||| | ||||||| ||
Sbjct 488 AACGGTTTTACAAGCA-CCTTCTTGATAAGGC-AAGGAAGAACGAGAGCATTGAGATTGG 545
Query 473 TAAGGAAGCGACGATGCTCATGAACAACATCTTCTGTAGGATGAGCATGGGAAGGAGTT- 531
||||||||| | || ||||| || |||| | |||| | |||| ||||| |||||||
Sbjct 546 TAAGGAAGCAATGAAACTCATTAATAACAGCATCTGCAAGATGTTTATGGGGAGGAGTTG 605
Query 532 TCTCAGAGGAGAATGGTGAGGCAGAGAGAGTCAGAGGCTTGGTGGCTGAATC-ATATGCC 590
| || ||||| ||||||||||||||||||||||||||||||||| | ||||| | ||||
Sbjct 606 T-TCTGAGGAAAATGGTGAGGCAGAGAGAGTCAGAGGCTTGGTGACCGAATCGAC-TGCC 663
Query 591 TTGGCGAAGAAGAT-TTTCTTCGCAT-C-TGTACTGCGCAGACTGCTTAAGAAGCTTCGG 647
||| | |||||||| ||| | ||| | ||| ||| ||| | ||||||||||| |||
Sbjct 664 TTGACAAAGAAGATCTTTATG-GCAAACATGT--TGCACAGGCACCTTAAGAAGCT-CGG 719
Query 648 A-TCCCACTATTCAAGAAGGATATCATGGATGTTTCCAACAGATTCAATGA-GCTGCTAG 705
| | |||| ||||| ||||| || |||| |||||| ||||||||| || | |||| |
Sbjct 720 AATATCACTGTTCAAAAAGGAGATAATGGGTGTTTCTTGCAGATTCAACGAAG-TGCT-G 777
Query 706 -AGAAGATTCTTGTGGAACAC-AATGAGAAACT-GGA 739
|||||||||||| |||| || || |||||||| |||
Sbjct 778 TAGAAGATTCTTGAGGAATACGAA-GAGAAACTTGGA 813
> Ahg480132 jgi|Araly1|480132|fgenesh2_kg.3__2833__AT2G05190.1
Length=288
Score = 270 bits (146), Expect = 2e-71
Identities = 232/272 (85%), Gaps = 11/272 (4%)
Strand=Plus/Plus
Query 1182 GAGTTTAAGCCGGAGAGGTTTTTAGGTTCTTCAAGATTAGGACAAGTA-GACGAGAGAGA 1240
||||||||||||||||||||| || |||||||||| | ||| ||| | || |||| |||
Sbjct 7 GAGTTTAAGCCGGAGAGGTTTCTAAGTTCTTCAAG--TGGGA-AAG-ATGAGGAGAAAGA 62
Query 1241 GGAAGC-TCAGAAGTACATTCCTTTCGGCGGAGGAAGGAGAGGCTGTCCTGGAGCAAATC 1299
| |||| | |||||| ||||||| ||||| || ||| |||| |||||||||| ||||
Sbjct 63 GCAAGCGT-TTAAGTACCTTCCTTTTGGCGGCGGTAGGGGAGGATGTCCTGGAGGTAATC 121
Query 1300 TAGCTTCTAT-TTTCGTAGGAACCGCGATTGGAGTGATGGTGCAGTGCTTTGACTGGGGA 1358
|||||||||| ||| |||| |||||| |||||||||||||||||||||||||||||| |
Sbjct 122 TAGCTTCTATATTT-GTAGTAACCGCAATTGGAGTGATGGTGCAGTGCTTTGACTGGAAA 180
Query 1359 ATCAAAGGAGATAAGATCAACATGGAAGAGACTTTTGAAGGACTGACCCTTACCATGGTT 1418
||||||||||||||| |||||||||||||||||| ||||||| ||| ||| | |||||||
Sbjct 181 ATCAAAGGAGATAAGGTCAACATGGAAGAGACTTATGAAGGAATGAACCTAAGCATGGTT 240
Query 1419 CATCCAATTAAGTGCACTCC-GATTCCTCGAA 1449
||||| |||||||||| || | |||||||||
Sbjct 241 CATCCGCTTAAGTGCACACCAG-TTCCTCGAA 271
> Ahg933050 jgi|Araly1|933050|scaffold_401038.1
Length=373
Score = 198 bits (107), Expect = 9e-50
Identities = 265/337 (79%), Gaps = 27/337 (8%)
Strand=Plus/Plus
Query 1129 TTATAAATGCTTACGCT-TGGATGAGAGATCCTGATTCCTGGGAAGATCCTAAT-GAGTT 1186
|||| |||| ||| ||| | |||||||||||| || ||||||||||||| | |||||
Sbjct 4 TTATTAATGGTTATGCTAT-AATGAGAGATCCTAATAACTGGGAAGATCCT-CTGGAGTT 61
Query 1187 TAAGCCGGAGAGGTTT-TTAGGTTCTTCAAGAT-TAG-GACAAGTA-GACGA-GAGAGAG 1241
||| || ||||||||| || | ||||||||||| || | ||| | | ||| | |||
Sbjct 62 TAAACCCGAGAGGTTTCTT-GATTCTTCAAGATCAAGCCAAAAGGACG-CGATAAAAGAA 119
Query 1242 GAAGCTCAGAAG-TACATTCCTTTCGGCG-GAGGAAGGAGAGGCTGTCCTGGAGCAAATC 1299
|||| || ||| |||||| ||||||| | | ||||||||||||||||||||||||||||
Sbjct 120 GAAG-TCCTAAGATACATTGCTTTCGG-GAGTGGAAGGAGAGGCTGTCCTGGAGCAAATC 177
Query 1300 TAGCTTCTATTT-TCGTAGGAACCGCGATTGGAGTGATGGTGCAGTGCTTTGACTGGG-G 1357
|||||| | | | | |||| ||| || ||||||||||||||||| |||||||| ||| |
Sbjct 178 TAGCTTATCTCTCT-GTAGAAACTGCTATTGGAGTGATGGTGCAATGCTTTGATTGGAAG 236
Query 1358 AATCAAAGGAGATAAGATCAACATGGAA-GAGACTTTTG-AAGGACTGACCCTTACCATG 1415
| ||||||||||||||||||||||| || ||| || || || | | || ||||||||
Sbjct 237 A-TCAAAGGAGATAAGATCAACATG-AATGAGGCTGCTGGAAAAA-TAACTATTACCATG 293
Query 1416 GTTCA-TCCAATTAAGTGCACTCC-GATTCCTCGAAC 1450
| || ||| ||| ||||| || | ||||||||||
Sbjct 294 GC-CAATCCTCTTACGTGCAGTCTTG-TTCCTCGAAC 328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59306511465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5