BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20970.1
Length=1168
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923620 jgi|Araly1|923620|scaffold_104901.1 673 0.0
Ahg905118 jgi|Araly1|905118|Al_scaffold_0003_2246 497 6e-140
> Ahg923620 jgi|Araly1|923620|scaffold_104901.1
Length=865
Score = 673 bits (364), Expect = 0.0
Identities = 547/634 (86%), Gaps = 18/634 (3%)
Strand=Plus/Plus
Query 305 GCAGAGAAGAACAATGTTTATCCAAACCCAATCAACTCCAAATCCTTCTTCTCTCATGTT 364
||| || || |||||||||||| |||| |||||||| ||||||||||||||||| |||||
Sbjct 227 GCAAAGGAGGACAATGTTTATCGAAACACAATCAACACCAAATCCTTCTTCTCTAATGTT 286
Query 365 TTATCCTGGCAAACCAGTCATGGA-AGTTGGAAGTGCTGATTTTCCTAATGT-TCGTTCT 422
| ||||||| |||||||| ||||| | |||||||||||||||| |||||| | |||||||
Sbjct 287 TAATCCTGGTAAACCAGTTATGGATA-TTGGAAGTGCTGATTTCCCTAAT-TCTCGTTCT 344
Query 423 GCTCTGGGTTCGCCATTAGCCAAATCTAT-TTACTCCATTGATGGTGTAGTTCGAGTTTT 481
||| ||||||| || ||||| ||| | || || | |||||||||||||||||||||||||
Sbjct 345 GCTATGGGTTCACCTTTAGCTAAAGCCATCTT-CGCCATTGATGGTGTAGTTCGAGTTTT 403
Query 482 CTTTGGGTCAGATTTTGTCACTGTAACTAAGTCAGATGATGTATCATGGGATATTCTCAA 541
|||||||||||||||||| |||||||| ||||||||||||||| |||||||||| |||||
Sbjct 404 CTTTGGGTCAGATTTTGTTACTGTAACAAAGTCAGATGATGTAACATGGGATATACTCAA 463
Query 542 GCCTGAGATATTTGCAGCAGTCATGGA-TTTCTATTCTTCTGGCCAGCCTTTGTTTCTCG 600
|||||| || ||||||| || ||||| ||| || |||||||| |||||||||||||| |
Sbjct 464 GCCTGATATCTTTGCAGTGGTAATGGACTTT-TACTCTTCTGGTCAGCCTTTGTTTCTGG 522
Query 601 ACTCACAAGCTGCTGCTGCCAAGGATACTGCCAT-CAGCGAGGATGACTCTGAAACAGTA 659
| ||||||||| | |||||||||||||| ||||| || ||||||||| |||||||| |||
Sbjct 523 ATTCACAAGCTACAGCTGCCAAGGATACCGCCATTCA-CGAGGATGATTCTGAAACTGTA 581
Query 660 GCAATGATCAAGGAACTCTTAGAAACACGCATCAGACCAGCAGTTCAAGATGATGGTGGG 719
|||||||| ||||||||||| || || || ||| ||||| | |||||||||||||| |||
Sbjct 582 GCAATGATTAAGGAACTCTTGGAGACGCGTATCCGACCATCGGTTCAAGATGATGGAGGG 641
Query 720 GACATTGAGTATTGTGGGTTTGATCCGGAAAGC-GGTATAGTGAAGCTGAGGATGCAAGG 778
||||| ||||||||||| |||||| |||||| | |||||||| ||||| || ||||||||
Sbjct 642 GACATCGAGTATTGTGGATTTGATACGGAAA-CTGGTATAGTTAAGCTTAGAATGCAAGG 700
Query 779 AGCTTGTAGTGGTTGTCCGAGCTCATCTGTTACTTTGAAATCGGGAATCGAAAACATGCT 838
||||||||| |||||||| || |||||||||||||||||||| ||||| || || |||||
Sbjct 701 AGCTTGTAGCGGTTGTCCAAGTTCATCTGTTACTTTGAAATCAGGAATTGAGAATATGCT 760
Query 839 GATGCATTATGTATCCGAGGTGAAAGGTGTAGAACAAGAGTTTGATGGGGAAGATGAAGA 898
|||||||||||||||||||| |||||||| || ||||| || ||||| ||||| | ||
Sbjct 761 TATGCATTATGTATCCGAGGTCAAAGGTGTTGAGCAAGAATTCGATGGTGAAGA-G--GA 817
Query 899 GGGAACGTTGTCTGGAG-AGATGAGAGTAGAGTA 931
|||||| | |||||| | ||| ||||||||||
Sbjct 818 GGGAACATCGTCTGGTCCA-ATG-GAGTAGAGTA 849
> Ahg905118 jgi|Araly1|905118|Al_scaffold_0003_2246
Length=291
Score = 497 bits (269), Expect = 6e-140
Identities = 283/290 (98%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 642 GATGACTCTGAAACAGTAGCAATGATCAAGGAACTCTTAGAAACACGCATCAGACCAGCA 701
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATGACTCTGAAACCGTAGCAATGATCAAGGAACTCTTAGAAACACGCATCAGACCAGCA 60
Query 702 GTTCAAGATGATGGTGGGGACATTGAGTATTGTGGGTTTGATCCGGAAAGCGGTATAGTG 761
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCCAAGATGATGGTGGGGACATCGAGTATTGTGGGTTTGATCCGGAAAGCGGTATAGTG 120
Query 762 AAGCTGAGGATGCAAGGAGCTTGTAGTGGTTGTCCGAGCTCATCTGTTACTTTGAAATCG 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCTGAGGATGCAAGGAGCTTGTAGTGGTTGTCCGAGCTCATCTGTTACTTTGAAATCG 180
Query 822 GGAATCGAAAACATGCTGATGCATTATGTATCCGAGGTGAAAGGTGTAGAACAAGAGTTT 881
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAATCGAAAACATGTTGATGCATTATGTATCCGAGGTGAAAGGTGTAGAACAAGAGTTC 240
Query 882 GATGGGGAAGATGAAGAGGGAACGTTGTCTGGAGAGATGAGAGTAGAGTA 931
||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 241 GATGGGGAAGATGAAGAGGGAACATTGTCTGGAGAGGTGAGAGTAGAGTA 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43574494131
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5