BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G20993.1

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930049 jgi|Araly1|930049|scaffold_302506.1                        176    6e-44


> Ahg930049 jgi|Araly1|930049|scaffold_302506.1
Length=212

 Score =  176 bits (95),  Expect = 6e-44
 Identities = 116/125 (93%), Gaps = 5/125 (4%)
 Strand=Plus/Plus

Query  111  AGATTGCGATGATGCTACT-TGTGTCACTCTGTGTAAGCAAAAATGGAACGGAAATGGTG  169
            ||||||||||||||||| | ||||||||| ||||||||||||||||||| || ||  |||
Sbjct  71   AGATTGCGATGATGCTA-TGTGTGTCACTATGTGTAAGCAAAAATGGAA-GGGAA--GTG  126

Query  170  GTGGCTCGTGCTTCCAAATCGTAAATTTAAAGAGTTGCCTTTGCGCTTTTCCATGCCAAG  229
            |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  127  GTGGCTCGTGTTTCCAAAACGTAAATTTAAAGAGTTGCCTTTGCGCTTTTCCATGCCAAG  186

Query  230  TTTGA  234
            |||||
Sbjct  187  TTTGA  191



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8057723071


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5