BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20997.1
Length=231
Score E
Sequences producing significant alignments: (Bits) Value
Ahg887570 jgi|Araly1|887570|Al_scaffold_0807_1 329 4e-90
Ahg905121 jgi|Araly1|905121|Al_scaffold_0003_2249 324 2e-88
Ahg930049 jgi|Araly1|930049|scaffold_302506.1 137 3e-32
> Ahg887570 jgi|Araly1|887570|Al_scaffold_0807_1
Length=231
Score = 329 bits (178), Expect = 4e-90
Identities = 214/231 (93%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 1 ATGACTTACAAAGCCACCATTCTTGCTATCTTCATGATTATCCTTGTTCTAGGGATTGGA 60
||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1 ATGACTTACCGAGCCACCATTCTTGCTATCTTCATGATTTTCCTTGTTCTAGGGAT-GGA 59
Query 61 A-CGAAGGAGACGCGAGGACAAGAAACGTGCCATGATCTTATAATGAAAAGAGATTGTGA 119
| | || ||||||| |||||||||||| || |||||||||||||||||||||||||||||
Sbjct 60 AACAAAAGAGACGCAAGGACAAGAAACATGTCATGATCTTATAATGAAAAGAGATTGTGA 119
Query 120 CGAAGCTACGTGTGTCA-ATATGTGTCAGCAAAAATGGAAGGGAAGTGGTGGCTCGTGCT 178
||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct 120 CGAAGCTACGTGTGTCACA-ATGTGTCAGCAAAAATGGAAGGGAAGTGTTGGCTCGTGCT 178
Query 179 TTCAAAACTTTAATGTAATGAGTTGCATTTGCAATTTTCCATGCCAAGTTT 229
| |||||| | ||||||||||||||| ||||||||||||||||||||||||
Sbjct 179 TCCAAAACGTCAATGTAATGAGTTGCCTTTGCAATTTTCCATGCCAAGTTT 229
> Ahg905121 jgi|Araly1|905121|Al_scaffold_0003_2249
Length=231
Score = 324 bits (175), Expect = 2e-88
Identities = 213/231 (92%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 1 ATGACTTACAAAGCCACCATTCTTGCTATCTTCATGATTATCCTTGTTCTAGGGATTGGA 60
||||||| | |||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1 ATGACTTTCCGAGCCACCATTCTTGCTATCTTCATGATTGTCCTTGTTCTAGGGAT-GGA 59
Query 61 A-CGAAGGAGACGCGAGGACAAGAAACGTGCCATGATCTTATAATGAAAAGAGATTGTGA 119
| | || ||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 60 AACAAAAGAGACGCAAGGACAAGAAACGTGTCATGATCTTATAATGAAAAGAGATTGTGA 119
Query 120 CGAAGCTACGTGTGTCA-ATATGTGTCAGCAAAAATGGAAGGGAAGTGGTGGCTCGTGCT 178
||||||||||||||||| | |||||||||||||||||||||||| ||| |||||||||||
Sbjct 120 CGAAGCTACGTGTGTCACA-ATGTGTCAGCAAAAATGGAAGGGAGGTGTTGGCTCGTGCT 178
Query 179 TTCAAAACTTTAATGTAATGAGTTGCATTTGCAATTTTCCATGCCAAGTTT 229
| |||||| | ||||||||||||||| ||||||||||||||||||||||||
Sbjct 179 TCCAAAACGTCAATGTAATGAGTTGCCTTTGCAATTTTCCATGCCAAGTTT 229
> Ahg930049 jgi|Araly1|930049|scaffold_302506.1
Length=212
Score = 137 bits (74), Expect = 3e-32
Identities = 105/120 (88%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 111 AGATTGTGACGAAGCTACGTGTGTCAATATGTGTCAGCAAAAATGGAAGGGAAGTGGTGG 170
|||||| || || |||| |||||||| ||||||| |||||||||||||||||||||||||
Sbjct 71 AGATTGCGATGATGCTATGTGTGTCACTATGTGTAAGCAAAAATGGAAGGGAAGTGGTGG 130
Query 171 CTCGTGCTTTC-AAAACTTTAATGTAATGAGTTGCATTTGCAATTTTCCATGCCAAGTTT 229
|||||| |||| ||||| | ||| ||| ||||||| ||||| |||||||||||||||||
Sbjct 131 CTCGTG-TTTCCAAAACGTAAATTTAAAGAGTTGCCTTTGCGCTTTTCCATGCCAAGTTT 189
Score = 80.5 bits (43), Expect = 5e-15
Identities = 49/52 (94%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 1 ATGACTTACAAAGCCACCATTCTTGCTATCTTCATGATTATCCTTGTTCTAG 52
|||| |||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 21 ATGAATTACCAAGCCACCATTCTTGCTATCTTCATGATTGTCCTTGTTCTAG 72
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 7943158288
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5