BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20997.1 Length=231 Score E Sequences producing significant alignments: (Bits) Value Ahg887570 jgi|Araly1|887570|Al_scaffold_0807_1 329 4e-90 Ahg905121 jgi|Araly1|905121|Al_scaffold_0003_2249 324 2e-88 Ahg930049 jgi|Araly1|930049|scaffold_302506.1 137 3e-32 > Ahg887570 jgi|Araly1|887570|Al_scaffold_0807_1 Length=231 Score = 329 bits (178), Expect = 4e-90 Identities = 214/231 (93%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 1 ATGACTTACAAAGCCACCATTCTTGCTATCTTCATGATTATCCTTGTTCTAGGGATTGGA 60 ||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 1 ATGACTTACCGAGCCACCATTCTTGCTATCTTCATGATTTTCCTTGTTCTAGGGAT-GGA 59 Query 61 A-CGAAGGAGACGCGAGGACAAGAAACGTGCCATGATCTTATAATGAAAAGAGATTGTGA 119 | | || ||||||| |||||||||||| || ||||||||||||||||||||||||||||| Sbjct 60 AACAAAAGAGACGCAAGGACAAGAAACATGTCATGATCTTATAATGAAAAGAGATTGTGA 119 Query 120 CGAAGCTACGTGTGTCA-ATATGTGTCAGCAAAAATGGAAGGGAAGTGGTGGCTCGTGCT 178 ||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||| Sbjct 120 CGAAGCTACGTGTGTCACA-ATGTGTCAGCAAAAATGGAAGGGAAGTGTTGGCTCGTGCT 178 Query 179 TTCAAAACTTTAATGTAATGAGTTGCATTTGCAATTTTCCATGCCAAGTTT 229 | |||||| | ||||||||||||||| |||||||||||||||||||||||| Sbjct 179 TCCAAAACGTCAATGTAATGAGTTGCCTTTGCAATTTTCCATGCCAAGTTT 229 > Ahg905121 jgi|Araly1|905121|Al_scaffold_0003_2249 Length=231 Score = 324 bits (175), Expect = 2e-88 Identities = 213/231 (92%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 1 ATGACTTACAAAGCCACCATTCTTGCTATCTTCATGATTATCCTTGTTCTAGGGATTGGA 60 ||||||| | |||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 1 ATGACTTTCCGAGCCACCATTCTTGCTATCTTCATGATTGTCCTTGTTCTAGGGAT-GGA 59 Query 61 A-CGAAGGAGACGCGAGGACAAGAAACGTGCCATGATCTTATAATGAAAAGAGATTGTGA 119 | | || ||||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 60 AACAAAAGAGACGCAAGGACAAGAAACGTGTCATGATCTTATAATGAAAAGAGATTGTGA 119 Query 120 CGAAGCTACGTGTGTCA-ATATGTGTCAGCAAAAATGGAAGGGAAGTGGTGGCTCGTGCT 178 ||||||||||||||||| | |||||||||||||||||||||||| ||| ||||||||||| Sbjct 120 CGAAGCTACGTGTGTCACA-ATGTGTCAGCAAAAATGGAAGGGAGGTGTTGGCTCGTGCT 178 Query 179 TTCAAAACTTTAATGTAATGAGTTGCATTTGCAATTTTCCATGCCAAGTTT 229 | |||||| | ||||||||||||||| |||||||||||||||||||||||| Sbjct 179 TCCAAAACGTCAATGTAATGAGTTGCCTTTGCAATTTTCCATGCCAAGTTT 229 > Ahg930049 jgi|Araly1|930049|scaffold_302506.1 Length=212 Score = 137 bits (74), Expect = 3e-32 Identities = 105/120 (88%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 111 AGATTGTGACGAAGCTACGTGTGTCAATATGTGTCAGCAAAAATGGAAGGGAAGTGGTGG 170 |||||| || || |||| |||||||| ||||||| ||||||||||||||||||||||||| Sbjct 71 AGATTGCGATGATGCTATGTGTGTCACTATGTGTAAGCAAAAATGGAAGGGAAGTGGTGG 130 Query 171 CTCGTGCTTTC-AAAACTTTAATGTAATGAGTTGCATTTGCAATTTTCCATGCCAAGTTT 229 |||||| |||| ||||| | ||| ||| ||||||| ||||| ||||||||||||||||| Sbjct 131 CTCGTG-TTTCCAAAACGTAAATTTAAAGAGTTGCCTTTGCGCTTTTCCATGCCAAGTTT 189 Score = 80.5 bits (43), Expect = 5e-15 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 1 ATGACTTACAAAGCCACCATTCTTGCTATCTTCATGATTATCCTTGTTCTAG 52 |||| |||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 21 ATGAATTACCAAGCCACCATTCTTGCTATCTTCATGATTGTCCTTGTTCTAG 72 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 7943158288 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5