BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21055.1
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951910 jgi|Araly1|951910|scaffold_24900002.1 688 0.0
Ahg930053 jgi|Araly1|930053|scaffold_302510.1 682 0.0
> Ahg951910 jgi|Araly1|951910|scaffold_24900002.1
Length=413
Score = 688 bits (372), Expect = 0.0
Identities = 396/408 (97%), Gaps = 0/408 (0%)
Strand=Plus/Plus
Query 99 AATCAACTATCAAGCAATGGCATCGATGACCATGACCGCTACCTTCTTCCCGGCCGTCGC 158
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||
Sbjct 6 AATCAACTATCAAGCAATGGCATCGATGACCATGACCGCTACTTTCCTCCCGGCCATCGC 65
Query 159 CAAGGTTCCCTCAGCCACCGGCGGACGAAGGCTCTCCGTAGTCAGAGCCTCCACGAGCGA 218
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 66 CAAGCTTCCCTCAGCCACCGGCGGACGAAGGCTCTCGGTAGTCAGAGCCTCCACGAGCGA 125
Query 219 CAACACACCCAGCTTAGAAGTCAAGGAACAGAGCAGCACCACAATGAGGAGGGACCTCAT 278
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 126 CAACACACCCAGCTTACAAGTCAAGGAACAGTGCAGCACCACAATGAGGAGGGACCTCAT 185
Query 279 GTTCACGGCTGCAGCTGCAGCGGTTTGTTCTTTGGCTAAGGTAGCCATGGCTGAAGAAGA 338
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 186 GTTCACGGCTGCAGCTGCAGCGGTTTGTTCTTTGGCTAAAGTAGCCATGGCTGAAGAAGA 245
Query 339 AGAGCCCAAGCGAGGGACAGAGGCGGCCAAGAAGAAATACGCACAAGTTTGTGTCACAAT 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 AGAGCCCAAGCGAGGGACAGAGGCGGCCAAGAAGAAATACGCACAAGTTTGTGTCACAAT 305
Query 399 GCCTACGGCCAAGATCTGCCGCTACTGATTCAACAACCCACCTTCTGCATGTCTATCTCT 458
|||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| ||
Sbjct 306 GCCTACGGCCAAGATCTGCCGCTACTGATTCAACAAACCACCTTCTTCATGCCTATCCCT 365
Query 459 CTCTTTCAATTTCGGTAAATTTTCTCAATTAAGTTTGGTCTGTAATCG 506
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CTCTTTCAATTTCGGTAAATTTTCTCAATTAAGTTTGGTCTGTAATCG 413
> Ahg930053 jgi|Araly1|930053|scaffold_302510.1
Length=413
Score = 682 bits (369), Expect = 0.0
Identities = 395/408 (97%), Gaps = 0/408 (0%)
Strand=Plus/Plus
Query 99 AATCAACTATCAAGCAATGGCATCGATGACCATGACCGCTACCTTCTTCCCGGCCGTCGC 158
|||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| ||||
Sbjct 6 AATCAACTATCAAGCAATGGCATCGATGACCATGACTGCTACTTTCCTCCCGGCCATCGC 65
Query 159 CAAGGTTCCCTCAGCCACCGGCGGACGAAGGCTCTCCGTAGTCAGAGCCTCCACGAGCGA 218
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 66 CAAGCTTCCCTCAGCCACCGGCGGACGAAGGCTCTCGGTAGTCAGAGCCTCCACGAGCGA 125
Query 219 CAACACACCCAGCTTAGAAGTCAAGGAACAGAGCAGCACCACAATGAGGAGGGACCTCAT 278
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 126 CAACACACCCAGCTTACAAGTCAAGGAACAGTGCAGCACCACAATGAGGAGGGACCTCAT 185
Query 279 GTTCACGGCTGCAGCTGCAGCGGTTTGTTCTTTGGCTAAGGTAGCCATGGCTGAAGAAGA 338
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 186 GTTCACGGCTGCAGCTGCAGCGGTTTGTTCTTTGGCTAAAGTAGCCATGGCTGAAGAAGA 245
Query 339 AGAGCCCAAGCGAGGGACAGAGGCGGCCAAGAAGAAATACGCACAAGTTTGTGTCACAAT 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 AGAGCCCAAGCGAGGGACAGAGGCGGCCAAGAAGAAATACGCACAAGTTTGTGTCACAAT 305
Query 399 GCCTACGGCCAAGATCTGCCGCTACTGATTCAACAACCCACCTTCTGCATGTCTATCTCT 458
|||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| ||
Sbjct 306 GCCTACGGCCAAGATCTGCCGCTACTGATTCAACAAACCACCTTCTTCATGCCTATCCCT 365
Query 459 CTCTTTCAATTTCGGTAAATTTTCTCAATTAAGTTTGGTCTGTAATCG 506
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CTCTTTCAATTTCGGTAAATTTTCTCAATTAAGTTTGGTCTGTAATCG 413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20146150992
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5