BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21060.1
Length=2303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318845 jgi|Araly1|318845|fgenesh1_pm.C_scaffold_3001861 2392 0.0
Ahg887523 jgi|Araly1|887523|Al_scaffold_0249_1 1999 0.0
> Ahg318845 jgi|Araly1|318845|fgenesh1_pm.C_scaffold_3001861
Length=1683
Score = 2392 bits (1295), Expect = 0.0
Identities = 1401/1454 (96%), Gaps = 0/1454 (0%)
Strand=Plus/Plus
Query 389 ATGAACGCTCCGATCATAGATCCATTGCAAGGAGATTTTCCTGAGGTGATTGAAGAATAT 448
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGAACGCTCCGATCATAGATCCATTGCAAGGAGATTTTCCGGAGGTGATTGAAGAATAT 60
Query 449 CTGGAACATGGTGTCATTAAATGCGTTGCCTTTAATCACCGTGGTTCTCTTCTCGCTGCT 508
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 61 CTGGAACATGGTGTCATTAAATGTGTTGCCTTTAACCACCGTGGTTCTCTTCTCGCTGCG 120
Query 509 GGATGTGCCGATGGTGGCTGTGTAATCTGGGATTTCGAAACAAGAGGCATTGCAAAGGAG 568
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GGATGTGCCGATGGGGGATGTGTAATCTGGGATTTCGAAACTAGAGGCATTGCAAAGGAG 180
Query 569 ATTCGTGATAATGATTGTTCTGCTGCTATAACAAGTGTCTCCTGGTCCAAATATGGGCAC 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTCGTGATAATGATTGTTCTGCTGCTATAACAAGTGTCTCCTGGTCCAAATATGGGCAC 240
Query 629 CGCCTGCTTGTCTCAGCTGCAGATAAGTCATTAACTCTTTGGGATGTCTCAACCGGAGAG 688
||| ||||||| || |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 241 CGCTTGCTTGTGTCTGCTGCAGACAAGTCATTAACTCTTTGGGATGTCTCTACCGGAGAG 300
Query 689 AAGATTGCTCGTACGATTCTTCAGCAGACTCCGTTGCAAGCTCGTTTAAACCCTGGCTTA 748
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGATTGCTCGTACGATTCTTCAGCAGACTCCGTTGCAAGCTCGTTTAAACCCTGGCTTG 360
Query 749 AGTTCTCCTTCTCTCTGTCTGGCATGCCCGCTCTCATCCGCTCCGATGATAGTTGACTTT 808
||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||
Sbjct 361 AGTTCTCCTTCTCTCTGTCTGGCGTGCCCGCTCTCTTCTGCTCCGATGATTGTTGACTTT 420
Query 809 GACATTGATTGTACAACTTTGCTTCCAGTCTCTGTGCCTGAGATGCCTGATGTATTAGCT 868
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 GATATTGATTGTACAACTTTGCTTCCAGTCGCTGTGCCTGAGATGCCTGATGTATTAGCT 480
Query 869 CCTCCGCAACGCAGTAAATGTCCTGAATCAAATCCTCCTTTCTCTCCAGCTGCAGCGTGC 928
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 CCTCCACAACGCAGTAAATGTCCTGAATCAAATCCTCCTTTCTCTCCAGCTGCAGCATGC 540
Query 929 TTTAACAAGTGTGGGGATCTTGTTTATATCGGTAATTCCAAAGGAGAGATACTTATAGTT 988
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 541 TTTAACAAGTGTGGGGATCTTGTTTATATAGGTAATTCCAAAGGAGAAATACTTATAGTT 600
Query 989 GATTATAAAAGTGTTCGAGTTCTTGCTTTGGTTTCTGCGTCTGGTGCGGCACCTGTGAAG 1048
||||||||||||||||||||||||||||||||| ||| | |||| ||||||||||||||
Sbjct 601 GATTATAAAAGTGTTCGAGTTCTTGCTTTGGTTCCTGTGCCTGGCGCGGCACCTGTGAAA 660
Query 1049 AACATTGTGTTTAGCAGGAATGGGCAGTATCTTCTCACAAATTCACATGATCGAACCATT 1108
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 AACATAGTGTTTAGCAGGAATGGGCAGTATCTTCTCACGAATTCACATGATCGAACCATT 720
Query 1109 AGGATATATGAAAATCTTCTCCCAGCAAAAAATGTGCTTAAATCCCTTGAGGACCTGGGG 1168
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 721 AGGATATATGAAAATCTTCTCCCAGCAAAAAATGTGCTTAGATCCCTTGAGGACTTGGGA 780
Query 1169 AAGAACATAGATGGGCTTGATGGTATTGAGAAAATGAAGACAGTTGGATCAAAATGCTTA 1228
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 781 AAGAACATAGATGGGCTTGATGGTGTTGAGAAAATGAAGACTGTTGGATCAAAATGCTTA 840
Query 1229 ACACTCTTCAGGGAATTCCAAGATTCAGTTACAAAAATGCATTGGAAAGCGCCTTGTTTC 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACACTCTTCAGGGAATTCCAAGATTCAGTTACAAAAATGCATTGGAAAGCGCCTTGTTTC 900
Query 1289 AGTGGTGATGGTGAGTGGGTAGTTGGGGGTTCTGCGTGCAAAGGGGAACATAAGATCTAC 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGTGGTGATGGTGAGTGGGTAGTTGGGGGTTCTGCGTGCAAAGGGGAACATAAGATCTAC 960
Query 1349 ATATGGGACCGAGCTGGGCATCTTGTGAAAATATTAGAAGGTCCAAAAGAAGCGTTGATT 1408
|||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 961 ATATGGGATCGAGCGGGGCATCTTGTGAAAATTTTAGAAGGTCCTAAAGAAGCGTTGATT 1020
Query 1409 GATCTAGCTTGGCATCCTGTTCATCCCATAATCGTTTCTGTTTCCTTGGCGGGTCTAGTA 1468
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1021 GATCTAGCTTGGCATCCTGTTCATCCCATAATCGTCTCTGTTTCCTTGGCGGGTCTAGTA 1080
Query 1469 TATATTTGGGCAAAAGATTACACAGAGAACTGGAGTGCATTTGCTCCTGATTTCAAGGAG 1528
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1081 TATATTTGGGCAAAAGATTACACAGAGAACTGGAGTGCATTTGCTCCGGATTTCAAGGAG 1140
Query 1529 CTTGAGGAGAATGAAGAGTATGTGGAACGCGAAGATGAATTTGATTTGATACCTGAAACA 1588
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTTGAGGAGAACGAAGAGTATGTGGAACGCGAAGATGAATTTGATTTGATACCTGAAACA 1200
Query 1589 GAAAAGGTAAAAGTTTTAGATGTTAATGAAGATGAAGAAGTTGACATAGATACGGTGGAA 1648
|||||||| | ||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1201 GAAAAGGTGAGAGTATTAGATGTTAATGAAGATGAAGAAGTTGACATAGAGACAGTGGAA 1260
Query 1649 AAGGATGCTTTTAGTGATTCAGATATGTCAGTGGAGGAACTCCGCTACCTTCCAGCTGAA 1708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AAGGATGCTTTTAGTGATTCAGATATGTCAGTGGAGGAACTCCGCTACCTTCCAGCTGAA 1320
Query 1709 CCTATTCCAGATACAAATGACCAGCAAGACAATTTGGTTGAAAGCATAAAGTTAATTGAA 1768
|| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1321 CCGATCCCAGATACAAATGACCAGCTAGACAATTTGGTTGAAAGCATCAAGTTAATTGAA 1380
Query 1769 GGTCAGATATCTGCATCTCCTGCTTCTGAAGAGGCTGGTCAGAATGGACACCATGCATCA 1828
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GGTCAGATATCTGCATCTCCAGCTTCTGAAGAGGCTGGTCAGAATGGACACCATGCATCA 1440
Query 1829 AGTCCACAAGCAGA 1842
|||||||||| |||
Sbjct 1441 AGTCCACAAGGAGA 1454
Score = 296 bits (160), Expect = 5e-79
Identities = 187/199 (94%), Gaps = 5/199 (3%)
Strand=Plus/Plus
Query 1838 GCAGAAGAAATGGGTGAGACACGAGGAAAGAGAAAGAGGAAACCATCAGAGAAAGCCATG 1897
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1486 GCAGAAGAAATGGGTGAGACACGAGGAAAGAGAAAAAGGAAACCATCAGAGAAAGCCATG 1545
Query 1898 GAGCTGCAGGCAGAGAAGGCAAAACCATTGAAAGGGTCAGGCAAAACAGTAAGAGCAAAA 1957
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1546 GAGCTGCAGGCAGAGAAGGCAAAACCATTGAAAGGGTCAGGCAGAACAGTAAGAGCAAAA 1605
Query 1958 AACAGAGCAGC-GTTTGATCAAGAAACCGATGACAGTATAAATGGTG--G-tgatgatga 2013
|||||||| ||| |||||||||||||||||||| |||||||| | | |||||||||
Sbjct 1606 GGCAGAGCAGGAGTT-GATCAAGAAACCGATGACAGCATAAATGGCGATGATGATGATGA 1664
Query 2014 tgatgatgCATATTATTAA 2032
|||||||||||||||||||
Sbjct 1665 TGATGATGCATATTATTAA 1683
> Ahg887523 jgi|Araly1|887523|Al_scaffold_0249_1
Length=1218
Score = 1999 bits (1082), Expect = 0.0
Identities = 1166/1208 (97%), Gaps = 0/1208 (0%)
Strand=Plus/Plus
Query 389 ATGAACGCTCCGATCATAGATCCATTGCAAGGAGATTTTCCTGAGGTGATTGAAGAATAT 448
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGAACGCTCCGATCATAGATCCATTGCAAGGAGATTTTCCGGAGGTGATTGAAGAATAT 60
Query 449 CTGGAACATGGTGTCATTAAATGCGTTGCCTTTAATCACCGTGGTTCTCTTCTCGCTGCT 508
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 61 CTGGAACATGGTGTCATTAAATGTGTTGCCTTTAACCACCGTGGTTCTCTTCTCGCTGCG 120
Query 509 GGATGTGCCGATGGTGGCTGTGTAATCTGGGATTTCGAAACAAGAGGCATTGCAAAGGAG 568
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GGATGTGCCGATGGGGGATGTGTAATCTGGGATTTCGAAACTAGAGGCATTGCAAAGGAG 180
Query 569 ATTCGTGATAATGATTGTTCTGCTGCTATAACAAGTGTCTCCTGGTCCAAATATGGGCAC 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTCGTGATAATGATTGTTCTGCTGCTATAACAAGTGTCTCCTGGTCCAAATATGGGCAC 240
Query 629 CGCCTGCTTGTCTCAGCTGCAGATAAGTCATTAACTCTTTGGGATGTCTCAACCGGAGAG 688
||| ||||||| || |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 241 CGCTTGCTTGTGTCTGCTGCAGACAAGTCATTAACTCTTTGGGATGTCTCTACCGGAGAG 300
Query 689 AAGATTGCTCGTACGATTCTTCAGCAGACTCCGTTGCAAGCTCGTTTAAACCCTGGCTTA 748
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGATTGCTCGTACGATTCTTCAGCAGACTCCGTTGCAAGCTCGTTTAAACCCTGGCTTG 360
Query 749 AGTTCTCCTTCTCTCTGTCTGGCATGCCCGCTCTCATCCGCTCCGATGATAGTTGACTTT 808
||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||
Sbjct 361 AGTTCTCCTTCTCTCTGTCTGGCGTGCCCGCTCTCTTCTGCTCCGATGATTGTTGACTTT 420
Query 809 GACATTGATTGTACAACTTTGCTTCCAGTCTCTGTGCCTGAGATGCCTGATGTATTAGCT 868
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 GATATTGATTGTACAACTTTGCTTCCAGTCGCTGTGCCTGAGATGCCTGATGTATTAGCT 480
Query 869 CCTCCGCAACGCAGTAAATGTCCTGAATCAAATCCTCCTTTCTCTCCAGCTGCAGCGTGC 928
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 CCTCCACAACGCAGTAAATGTCCTGAATCAAATCCTCCTTTCTCTCCAGCTGCAGCATGC 540
Query 929 TTTAACAAGTGTGGGGATCTTGTTTATATCGGTAATTCCAAAGGAGAGATACTTATAGTT 988
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 541 TTTAACAAGTGTGGGGATCTTGTTTATATAGGTAATTCCAAAGGAGAAATACTTATAGTT 600
Query 989 GATTATAAAAGTGTTCGAGTTCTTGCTTTGGTTTCTGCGTCTGGTGCGGCACCTGTGAAG 1048
||||||||||||||||||||||||||||||||| ||| | |||| ||||||||||||||
Sbjct 601 GATTATAAAAGTGTTCGAGTTCTTGCTTTGGTTCCTGTGCCTGGCGCGGCACCTGTGAAA 660
Query 1049 AACATTGTGTTTAGCAGGAATGGGCAGTATCTTCTCACAAATTCACATGATCGAACCATT 1108
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 AACATAGTGTTTAGCAGGAATGGGCAGTATCTTCTCACGAATTCACATGATCGAACCATT 720
Query 1109 AGGATATATGAAAATCTTCTCCCAGCAAAAAATGTGCTTAAATCCCTTGAGGACCTGGGG 1168
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 721 AGGATATATGAAAATCTTCTCCCAGCAAAAAATGTGCTTAGATCCCTTGAGGACTTGGGA 780
Query 1169 AAGAACATAGATGGGCTTGATGGTATTGAGAAAATGAAGACAGTTGGATCAAAATGCTTA 1228
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 781 AAGAACATAGATGGGCTTGATGGTGTTGAGAAAATGAAGACTGTTGGATCAAAATGCTTA 840
Query 1229 ACACTCTTCAGGGAATTCCAAGATTCAGTTACAAAAATGCATTGGAAAGCGCCTTGTTTC 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACACTCTTCAGGGAATTCCAAGATTCAGTTACAAAAATGCATTGGAAAGCGCCTTGTTTC 900
Query 1289 AGTGGTGATGGTGAGTGGGTAGTTGGGGGTTCTGCGTGCAAAGGGGAACATAAGATCTAC 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGTGGTGATGGTGAGTGGGTAGTTGGGGGTTCTGCGTGCAAAGGGGAACATAAGATCTAC 960
Query 1349 ATATGGGACCGAGCTGGGCATCTTGTGAAAATATTAGAAGGTCCAAAAGAAGCGTTGATT 1408
|||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 961 ATATGGGATCGAGCGGGGCATCTTGTGAAAATTTTAGAAGGTCCTAAAGAAGCGTTGATT 1020
Query 1409 GATCTAGCTTGGCATCCTGTTCATCCCATAATCGTTTCTGTTTCCTTGGCGGGTCTAGTA 1468
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1021 GATCTAGCTTGGCATCCTGTTCATCCCATAATCGTCTCTGTTTCCTTGGCGGGTCTAGTA 1080
Query 1469 TATATTTGGGCAAAAGATTACACAGAGAACTGGAGTGCATTTGCTCCTGATTTCAAGGAG 1528
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1081 TATATTTGGGCAAAAGATTACACAGAGAACTGGAGTGCATTTGCTCCGGATTTCAAGGAG 1140
Query 1529 CTTGAGGAGAATGAAGAGTATGTGGAACGCGAAGATGAATTTGATTTGATACCTGAAACA 1588
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTTGAGGAGAACGAAGAGTATGTGGAACGCGAAGATGAATTTGATTTGATACCTGAAACA 1200
Query 1589 GAAAAGGT 1596
||||||||
Sbjct 1201 GAAAAGGT 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86731487865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5