BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21070.1
Length=1942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342253 jgi|Araly1|342253|fgenesh1_pg.C_scaffold_3002016 2431 0.0
> Ahg342253 jgi|Araly1|342253|fgenesh1_pg.C_scaffold_3002016
Length=1515
Score = 2431 bits (1316), Expect = 0.0
Identities = 1455/1519 (96%), Gaps = 22/1519 (1%)
Strand=Plus/Plus
Query 180 CAGAGAATGGTTTCACTCATTTGACTTCACTTGCTCAATCAGAGAAGGCTGTTCAGGAGC 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 CAGAGAATGGTTTCAGTCATTTGACTTCACTTGCTCAATCAGAGAAGGCTGTTCAGGAGC 64
Query 240 TTCTTCTTCAACAGACTCCTATGCAGGCTACTGACGACCATCTCGTTGAGTTCTCTGAGG 299
|||||||||| ||||||||||||||||||||||| ||||||||| ||||||| || ||||
Sbjct 65 TTCTTCTTCAGCAGACTCCTATGCAGGCTACTGATGACCATCTCATTGAGTTTTCAGAGG 124
Query 300 CTTTGAGAACTGTTGCAAAGGCACTAAGGGGAGCTGCTGAAGGAAAGGCGTTGGCTCAAG 359
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 125 CTTTGAGAACTGTTGCAAAGGCACTAAGAGGAGCTGCTGAAGGAAAGGCGTTGGCTCAAG 184
Query 360 CTGAGGCTGCTGAATGGAAGCGTAGATACGAGTTAGAGAGGTCTAAGAACGTGGAGTTGC 419
||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct 185 CTGAGGCTGCTGAATGGAAGCGTCGATACGAGTTAGAGAGGTCGAAGAACGTAGAGTTGC 244
Query 420 AGCATAAAGAACTGTCAAATGGAGTGTGTGCCGATGAATCTAATGGTCAAAGGATGGAGC 479
|||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct 245 AGCATAAAGAACTGTCGAATGGAGTGTGTGCCAATGAATCTAATAGTCAAAGGATAGAGC 304
Query 480 ACTTAGCAAAGTCTCCGCGGCTTTATGCTCAGGAAATCAGTTCTAATGGCATGGAGAC-T 538
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct 305 ACTTAGCAAAGTCTCCGCGGCTTTATGCTCAGGAAAACAGTTCTAATGGCATGGAG-CGT 363
Query 539 ATTTGCTCTCATGAAGTGCTCCAAGATGGTGGATTTAACAGTTTTAATAACAAATTGAAG 598
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 364 ATTTGCTCTCATGAAGTGCTCCAAGATGGTGGATTTAACAGTTTTACTAACAAATTGAAG 423
Query 599 AGGAAGGCATCATTTAAACTTTCATGGGGATGTAAGGGGATGGCTAATGATCAACACAAA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 AGGAAGGCATCATTTAAACTTTCATGGGGATGTAAGGGGATGGCTAATGATCAACACAAA 483
Query 659 AAAGAAATTGTTTCGTTTGAGAGAGGGAATATCAGCACAGCAGAGCGCAGTAGTAAACAG 718
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 484 AAAGAAATTGTTTCGTTCGAGAGAGGGAATATCAGTACAGCAGAGCGCAGTAGTAAACAG 543
Query 719 ATTTCACTGACATGGGAGTCTGATCCACAAACTGTACTTATTATCACTAAGCCTAATTCA 778
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 544 ATTTCATTGACATGGGAGTCTGATCCACAAACTGTGCTTATTATCACTAAACCTAATTCA 603
Query 779 ACTTCCGTGCGAGTTCTCTCTGTGGATATGGTCAGATGGTTGAGAACGCAAAAAGGACTA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 ACTTCCGTGCGAGTTCTCTCTGTGGATATGGTCAGATGGTTGAGAACGCAAAAAGGACTA 663
Query 839 AATATTTATGTGGAACCTCGAGTAAAGGAAGAACTCTTATCAGAATCAAGTTCCTTCAAC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 AATATTTATGTGGAACCTCGAGTAAAGGAAGAACTCTTATCAGAATCAAGTTCCTTCAAC 723
Query 899 TTCGTACAAACTTGGGAAGATGTTATGATTTATGATGCAGACAAGGAAATTTCACTTCTA 958
||||||||||||| | | || | ||| |||||||||||||||||||||
Sbjct 724 TTCGTACAAACTT-----G--G----GA---A-GAT---GACAAGGAAATTTCACTTCTA 765
Query 959 CACACAAAGGTTGACCTTCTTATAACTCTTGGTGGGGATGGCACAGTGCTATGGGCTGCA 1018
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 766 CACACAAAAGTTGACCTTCTTATAACTCTTGGTGGGGACGGCACAGTGCTATGGGCAGCA 825
Query 1019 TCGATGTTTAAAGGACCAGTGCCTCCAATTGTTCCATTCTCCATGGGATCTCTTGGATTT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TCGATGTTTAAAGGACCAGTGCCTCCAATTGTTCCATTCTCCATGGGATCTCTTGGATTT 885
Query 1079 ATGACTCCTTTTCACAGCGAACAATACCGAGATTGTCTTGAAGCGATTTTGAAGGGTCCT 1138
||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 886 ATGACTCCTTTCCACAGCGAACAATACCGAGATTGTCTTGAAGCGGTTTTGAAAGGTCCA 945
Query 1139 ATCAGTATAACACTACGACACAGGTTGCAGTGTCACATCATCAGAGATAAAGCAA-CACA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 946 ATCAGTATAACACTACGACACAGGTTGCAGTGTCACATCATCAGAGATAAAGCAACCA-A 1004
Query 1198 TGAATATGAACCAGAGGAGACTATGCTTGTTCTGAATGAAGTCACCATTGACCGTGGAAT 1257
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 TGAATATGAAACAGAGGAGACTATGCTTGTTCTGAATGAAGTCACCATTGACCGTGGAAT 1064
Query 1258 ATCTTCTTACCTCACAAACCTTGAATGCTACTGTGACAACTCATTCGTCACATGTGTGCA 1317
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1065 ATCTTCTTACCTCACAAACCTCGAATGCTACTGCGACAACTCATTCGTCACATGTGTGCA 1124
Query 1318 AGGCGATGGACTTATACTGTCTACAACATCTGGTAGCACCGCGTATTCACTTGCTGCTGG 1377
|||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1125 AGGCGATGGACTAATATTGTCTACAACATCTGGTAGCACCGCGTATTCACTCGCTGCTGG 1184
Query 1378 AGGGTCAATGGTCCATCCTCAGGTTCCTGGGATCTTATTCACGCCTATCTGTCCGCATTC 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGGGTCAATGGTCCATCCTCAGGTTCCTGGGATCTTATTCACGCCTATCTGTCCGCATTC 1244
Query 1438 TCTATCATTCCGCCCACTAATATTACCGGAACACGTGACAGTGAGAGTCCAAGTGCCATT 1497
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1245 TCTATCATTCCGCCCACTGATATTACCGGAACACGTGACAGTGAGAGTGCAAGTGCCATT 1304
Query 1498 CAACAGCAGAAGCTCCGCTTGGGTCTCCTTTGATGGGAAAGACCGGAAACAGCTTGAAGC 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 CAACAGCAGAAGCTCCGCTTGGGTCTCCTTTGATGGGAAAGACCGGAAACAGCTTGAAGC 1364
Query 1558 AGGGGATGCACTAGTGTGTAGCATGGCACCATGGCCCGTCTCAACCGCTTGTCAAGTTGA 1617
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1365 AGGGGATGCACTAGTGTGTAGCATGGCACCATGGCCCGTCTCAACCGCTTGCCAAGTTGA 1424
Query 1618 ATCCACTAACGACTTCTTACGCAGCATCCACGATGGTCTTCACTGGAACCTAAGAAAGAC 1677
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1425 ATCCACCAACGACTTCTTACGCAGCATCCACGATGGCCTTCACTGGAACCTAAGAAAGAC 1484
Query 1678 TCAATCTGCTGATGGACCT 1696
|||||| ||||| || |||
Sbjct 1485 TCAATCGGCTGACGGGCCT 1503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72980909420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5