BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21090.1
Length=2243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479628 jgi|Araly1|479628|fgenesh2_kg.3__2329__AT3G21090.1 3533 0.0
Ahg923635 jgi|Araly1|923635|scaffold_104916.1 1733 0.0
> Ahg479628 jgi|Araly1|479628|fgenesh2_kg.3__2329__AT3G21090.1
Length=2203
Score = 3533 bits (1913), Expect = 0.0
Identities = 2084/2166 (96%), Gaps = 13/2166 (1%)
Strand=Plus/Plus
Query 52 CTCTCTTTCTCTCTATAGCATTGTTATAGCTAGTT--------AGAGAGACA-AAACTAA 102
|||||| ||| | |||||||||||||||||||||| ||||||| | |||||||
Sbjct 23 CTCTCTCTCTATATATAGCATTGTTATAGCTAGTTAGAGAGAGAGAGAGAGAGAAACTAA 82
Query 103 AAACAAATGGAACTGGAGGGCTCGAGTAGTGGCCGGAGGCAGCTGCCGTCAAAGTTGGAG 162
|||| |||||||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 83 AAAC-AATGGAACTGGAAGGCTCGAGTAGTGGCCGGAGGCAGCTGCCGTCAAAGGTAGAG 141
Query 163 ATGAGCCGTGGAGCGTATTTGGCGTGGGAAGACTTGACGGTGGTAATACCCAATTTCAGT 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 ATGAGCCGTGGAGCGTATTTGGCGTGGGAAGACTTGACGGTGGTAATACCCAATTTCAGT 201
Query 223 GATGGTCCAACCAGAAGGTTGCTCCAAAGGCTAAACGGTTATGCAGAACCGGGTCGGATC 282
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 202 GATGGTCCAACCAGAAGGTTGCTTCAAAGGCTAAACGGTTATGCAGAACCGGGTCGGATC 261
Query 283 ATGGCTATAATGGGTCCTTCCGGATCCGGAAAGTCCACTCTTCTTGACTCTCTTGCAGGT 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 ATGGCTATAATGGGTCCTTCCGGATCCGGAAAGTCCACTCTTCTTGACTCTCTTGCAGGT 321
Query 343 AGACTCGCAAGAAACGTGGTCATGACCGGTAATCTTCTACTGAACGGCAAGAAAGCTAGA 402
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 322 AGACTCGCAAGAAACGTGGTCATGACCGGTAATCTTCTATTAAACGGCAAGAAAGCTAGA 381
Query 403 TTAGACTACGGTCTCGTAGCATATGTGACACAAGAGGACGTATTGTTGGGGACACTAACA 462
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 382 CTAGACTACGGTCTCGTAGCATATGTGACACAAGAGGATATATTGCTGGGGACATTAACA 441
Query 463 GTGAGGGAGACAATAACATACTCAGCTCACTTGAGACTTCCAAGTGATATGTCTAAAGAG 522
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 442 GTGAGGGAGACAATAACATACTCAGCTCATTTGAGACTTCCAAGTGATATGTCTAAAGAG 501
Query 523 GAAGTGAGTGACATCGTGGAAGGCACAATCATGGAGCTTGGTCTTCAAGACTGTTCAGAC 582
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 GAAGTGAGTGACATTGTGGAAGGCACAATCATGGAGCTTGGTCTTCAAGACTGTTCAGAC 561
Query 583 AGAGTCATTGGAAACTGGCACGCCAGAGGAGTTAGTGGCGGTGAGAGGAAACGTGTCAGC 642
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 562 AGAGTCATTGGAAACTGGCACGCAAGAGGAGTTAGTGGCGGTGAGAGGAAACGTGTCAGC 621
Query 643 ATTGCTTTGGAGATCCTCACTCGTCCTCAAATCCTTTTTCTCGACGAACCCACTAGTGGT 702
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 622 ATTGCTTTGGAGATCCTCACTCGTCCTCAAATCCTTTTTCTCGACGAACCCACAAGCGGT 681
Query 703 TTGGACAGTGCTTCTGCGTTTTTCGTTATTCAGGCGCTTAGGAACATTGCACGCGATGGC 762
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 682 TTGGACAGTGCTTCTGCGTTTTTCGTCATTCAGGCGCTTAGGAACATTGCACGCGATGGC 741
Query 763 AGAACCGTAATCTCCTCGGTTCATCAGCCCAGCAGCGAGGTTTTTGCGCTGTTCGATGAT 822
||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 742 AGAACCGTAATTTCCTCGGTTCATCAGCCTAGCAGCGAGGTTTTTGCGCTATTTGATGAT 801
Query 823 CTTTTCTTGCTTTCGAGTGGTGAGTCTGTCTACTTTGGTGAAGCCAAGTCTGCTGTTGAG 882
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 CTTTTCTTGCTCTCGAGTGGTGAGTCTGTCTACTTTGGTGAAGCCAAGTCTGCTGTTGAG 861
Query 883 TTCTTTGCAGAATCGGGTTTCCCGTGCCCGAAGAAGAGGAATCCTTCCGATCATTTTCTG 942
|||||||||||||| ||||| || ||||||||||| ||||||||||| |||||||||||
Sbjct 862 TTCTTTGCAGAATCAGGTTTTCCATGCCCGAAGAAAAGGAATCCTTCTGATCATTTTCTT 921
Query 943 CGATGTATAAACTCGGACTTTGATACAGTCACAGCTACACTCAAAGGATCTCAGAGAATT 1002
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 AGATGTATAAACTCAGACTTTGATACAGTCACAGCTACACTCAAAGGATCTCAGAGAATT 981
Query 1003 CAGGAAACACCAGCTACATCAGATCCTCTAATGAATCTAGCAACATCTGTGATCAAAGCA 1062
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 982 CAGGAAACACCAGCTACATCGGATCCTCTGATGAATCTAGCAACATCTGTGATCAAAGCA 1041
Query 1063 AGGCTTGTTGAGAATTACAAGCGTTCAAAGTATGCGAAATCCGCAAAATCTAGGATTCGA 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 AGGCTTGTTGAGAATTACAAGCGTTCAAAGTATGCGAAATCCGCAAAATCTAGGATTCGA 1101
Query 1123 GAACTATCTAACATCGAAGGGCTCGAGATGGAAATAAGAAAAGGAAGTGAAGCAACCTGG 1182
|||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1102 GAACTATCTAACATTGAAGGGCTCGAGATGGAAATAAGAAAAGGAAGTGAAGCGAGCTGG 1161
Query 1183 TGGAAACAACTTAGGACATTAACAGCAAGATCATTCATAAACATGTGTCGTGATGTCGGT 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 TGGAAACAACTTAGGACATTAACAGCAAGATCATTCATAAACATGTGTCGTGATGTCGGT 1221
Query 1243 TACTATTGGACACGAATAATAAGCTACATTGTTGTTTCTATAAGCGTAGGAACCATCTTC 1302
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1222 TACTATTGGACACGAATAATAAGCTACATTGTTGTTTCTATAAGTGTAGGAACCATCTTC 1281
Query 1303 TACGACGTTGGCTATAGCTACACATCAATCTTAGCCCGTGTTTCTTGCGGCGGATTCATC 1362
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1282 TACGACGTTGGCTATAGCTACACATCAATCTTAGCCCGAGTTTCTTGTGGCGGATTCATC 1341
Query 1363 ACTGGTTTCATGACTTTCATGTCCATTGGAGGCTTCCCTTCTTTCCTCGAAGAAATGAAG 1422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 ACTGGTTTCATGACTTTCATGTCCATTGGAGGCTTCCCTTCTTTCCTCGAAGAAATGAAG 1401
Query 1423 GTGTTCTATAAGGAGAGGCTAAGTGGATACTACGGCGTTTCGGTTTATATCCTCTCGAAT 1482
||||||||||| |||||||| ||||||||||| ||||| || ||||||||||||||||||
Sbjct 1402 GTGTTCTATAAAGAGAGGCTGAGTGGATACTATGGCGTGTCAGTTTATATCCTCTCGAAT 1461
Query 1483 TACATCTCTTCTTTCCCTTTCTTGGTTGCGATTTCGGTTATCACAGGAACTATTACTTAC 1542
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1462 TACATCTCTTCTTTCCCGTTCTTGGTTGCGATATCGGTTATCACGGGAACTATTACTTAC 1521
Query 1543 AACTTGGTGAAGTTTCGTCCCGGGTTCTCGCATTACGCTTTCTTCTGTCTCAACATCTTC 1602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 AACTTGGTGAAGTTTCGTCCCGGGTTCTCGCATTACGCTTTCTTCTGTCTCAACATCTTC 1581
Query 1603 TTCTCAGTTTCCGTGATAGAGAGTCTCATGATGGTTGTGGCTTCTGTTGTTCCAAACTTC 1662
||||||||||| ||||||||||||||||||||||||||||||| | || ||||||| |||
Sbjct 1582 TTCTCAGTTTCTGTGATAGAGAGTCTCATGATGGTTGTGGCTTTTCTTTTTCCAAATTTC 1641
Query 1663 TTGATGGGTCTTATCACTGGAGCTGGCCTCATTGGAATCATCATGATGACTTCTGGATTC 1722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1642 TTGATGGGTCTTATCACTGGAGCTGGCCTCATTGGAATCATCATGATGACTTCTGGATTC 1701
Query 1723 TTCCGTCTTCTTCCTGATCTTCCCAAAATCTTTTGGCGTTACCCGGTTTCTTACATAAGC 1782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 TTCCGTCTTCTTCCTGATCTTCCCAAAATCTTTTGGCGTTACCCGGTTTCTTACATAAGC 1761
Query 1783 TACGGTTCTTGGGCTATCCAGGGAGGGTACAAGAATGACTTTCTAGGGCTAGAGTTCGAG 1842
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1762 TACGGTTCTTGGGCTATCCAGGGAGGGTACAAGAACGATTTTCTAGGGCTAGAGTTCGAG 1821
Query 1843 CC-ATTGTTCCCGGGTGAGCCGAAAATGACAGGAGAGGAAGTGATAGAGAAGGTCTTTGG 1901
|| || |||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1822 CCTAT-GTTCCCGGGTGAGCCGAAAATGACAGGAGAAGAAGTGATAGAGAAGGTATTTGG 1880
Query 1902 AGTGAAGGTGACATATTCAAAATGGTGGGACTTAGCTGCGGTAGTAGCAATCCTTGTGTG 1961
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1881 AGTAAAGGTGACATATTCAAAATGGTGGGATTTAGCTGCGGTCGTAGCAATCCTTGTGTG 1940
Query 1962 TTACAGGCTTCTCTTCTTCGTGGTTCTAAAGCTGAGGGAGAGAGCAGGACCTGCTTTGAA 2021
|||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||
Sbjct 1941 TTACAGGCTTCTCTTCTTCGTGGTCCTAAAGTTGAGGGAGAGAGCAGGACCGGCTTTGAA 2000
Query 2022 GGCGATTCAGGCGAAAAGAACGATGAGGAATCTTGATAGGAGACCTTCTTTTAAGAGAAT 2081
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 2001 GGCGATTCAGGCAAAAAGAACGATGAGGAATCTCGATAGGAGACCTTCTTTCAAGAGAAT 2060
Query 2082 GCCTTCTCTGTCTCTTTCACTGTCGTCAATGTCTTCAAGGAGACACCAACCTCTCCGCTC 2141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2061 GCCTTCTCTGTCTCTTTCACTGTCGTCAATGTCTTCAAGGAGACACCAACCTCTCCGCTC 2120
Query 2142 ACTTTCTTCTCAAGAAGGCCTTAACTCTCCTATCCACTACTAAAAGACTTAATATAATGT 2201
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2121 ACTTTCTTCACAAGAAGGCCTTAACTCTCCTATCCACTACTAAAAGACTTA-TATAATGT 2179
Query 2202 ATGCAT 2207
||||||
Sbjct 2180 ATGCAT 2185
> Ahg923635 jgi|Araly1|923635|scaffold_104916.1
Length=2138
Score = 1733 bits (938), Expect = 0.0
Identities = 1687/2044 (83%), Gaps = 70/2044 (3%)
Strand=Plus/Plus
Query 160 GAGA-TGAGCCGTGGAGCGTATTTGGCGTGGGAAGACTTGACGGTGGTAATACCCAA-TT 217
|||| || ||||||| ||||| |||||||||||||| ||||||||||| ||||| || ||
Sbjct 103 GAGATTG-GCCGTGGGGCGTACTTGGCGTGGGAAGATTTGACGGTGGTTATACCAAACTT 161
Query 218 TCAGTGATGGTCCAAC-CAGAAGGTTGCTCCAAAGG-CTAAACGGTTATGCAGAACCGGG 275
| |||| |||||| || | |||| ||||| | | || || |||||| |||| ||||||||
Sbjct 162 T-AGTGGTGGTCCGACTC-GAAGATTGCT-CGATGGACTTAACGGTCATGCTGAACCGGG 218
Query 276 TCGGATCATGGCTATAATGGGTCCTTCCGGATCCGGAAAGTCCACTCTTCTTGACTCTCT 335
|||||| ||||| || |||||||||||||||||||| ||||| || |||||||| |||||
Sbjct 219 TCGGATTATGGCCATTATGGGTCCTTCCGGATCCGGCAAGTCTACGCTTCTTGATTCTCT 278
Query 336 TGCAGGTAGACTCGCAAGAAACGTGGTCATGACCGGTAATCTTCTACTGAACGGCAAGAA 395
|||||||||||||||||||||||| | |||||||||||||||||| ||||||| |||||
Sbjct 279 CGCAGGTAGACTCGCAAGAAACGTGATTATGACCGGTAATCTTCTATTGAACGGAAAGAA 338
Query 396 AGCTAGATTAGACTACGGTCTCGTAGCATATGTGACACAAGAGGACGTATTGTTGGGGAC 455
|| ||| |||||||||| ||||| || ||||| |||||||||||| | ||| |||| ||
Sbjct 339 GGCAAGACTAGACTACGGCCTCGTCGCTTATGTAACACAAGAGGACATTTTGATGGGAAC 398
Query 456 ACTAACAGTGAGGGAGACAATAACATACTCAGCTCACT-TGAGACT-TCCAAGTGATATG 513
|||||| ||||||||||||||||||||||||||||| | | || || | | |||||| ||
Sbjct 399 ACTAACGGTGAGGGAGACAATAACATACTCAGCTCA-TCTAAGGCTGT-CTAGTGATTTG 456
Query 514 TCTAAAGAGGAAGTGAGTGACATCGTGGAAGGCACAATCATGGAGCTTGGTCTTCAAGAC 573
| ||||| ||||| | ||||| || ||||| |||||||| |||||||||||||||||
Sbjct 457 ACCAAAGAAGAAGTCAACGACATTGTTGAAGGAACAATCATTGAGCTTGGTCTTCAAGAT 516
Query 574 TGTTCAGACAGAGTCATTGGAAACTGGCACGCCAGAGGAGTTAGTGGCGGTGAGAGGAAA 633
||| ||||||||||||| || || |||||| | |||||||| ||||||||||||||||||
Sbjct 517 TGTGCAGACAGAGTCATAGGTAATTGGCACTCTAGAGGAGTGAGTGGCGGTGAGAGGAAA 576
Query 634 CGTGTCAGCATTGCTTTGGAGATCCTCACTCGTCCTCAAATCCTT-TTTCTCGACGAACC 692
|| || ||| |||| ||||||||| | || || || ||||| || ||||| || |||||
Sbjct 577 CGCGTTAGCGTTGCGTTGGAGATCTTAACGCGGCCGCAAAT-TTTGTTTCTTGATGAACC 635
Query 693 CACTAGTGGTTTGGACAGTGCTTCTGCGTTT-TTCGTTATTCAGGCGCTTAGGAACATTG 751
||||||||||||||||||||||||||| ||| || || ||||| |||||||| || || |
Sbjct 636 CACTAGTGGTTTGGACAGTGCTTCTGC-TTTCTTTGTGATTCAAGCGCTTAGAAATATCG 694
Query 752 CACGCGA---TGGCAGAACCGTAATCTCCTCGGTTCATCAGCCCAGCAGCGAGGTTTTTG 808
| || || ||| |||||||| | || ||| |||| ||||| || ||||| ||||| |
Sbjct 695 CTCGAGATGGTGGTAGAACCGTTGTTTCATCGATTCACCAGCCTAGTAGCGAAGTTTTCG 754
Query 809 CGCTGTTCGATGATCT-TTTCTTGCTTTCGAGTGGTGAGTCTGTCTACTTTGGTGAAG-C 866
| || || |||||||| ||| ||||| || ||||| ||| |||| || ||||| | || |
Sbjct 755 CTCTCTTTGATGATCTATTT-TTGCTCTCTAGTGGAGAGACTGTTTATTTTGGCG-AGTC 812
Query 867 CAAGTCTGCTGTTGAGTTCTTTGCAGAATCGGGTTTCCCGTGCCCGAAGAAGA-GGAATC 925
||||| |||||||||||||||||| ||| ||||||| || ||||||||||| | ||||||
Sbjct 813 CAAGTTTGCTGTTGAGTTCTTTGCCGAAGCGGGTTTTCCTTGCCCGAAGAA-ACGGAATC 871
Query 926 CTTCCGATCATTTTCTGCGATGTATAAACTCGGACTTTGATACAGTCACAGCTACACTCA 985
|||| |||||||| || ||||||||||||||||||||||||| || |||||||||||||
Sbjct 872 CTTCTGATCATTTCCTAAGATGTATAAACTCGGACTTTGATACCGTTACAGCTACACTCA 931
Query 986 AAGGATCTCAGAGAATTCAGGAAACACCAGCTACATCAGATCCTCTAATGAATCTAGCAA 1045
||||||| ||||| |||| ||| ||||||||||||||||||||| |||||||||||||||
Sbjct 932 AAGGATCACAGAGGATTCGGGAGACACCAGCTACATCAGATCCTTTAATGAATCTAGCAA 991
Query 1046 CATCTGTGATCAAAGCAAGGCTTGTTGAGAATTACAAG-CGTTCAAAGTATGCGAAATCC 1104
|||||| ||||||||| || |||||||||||||| | ||||||| || ||||||||
Sbjct 992 CATCTGAGATCAAAGCTAGACTTGTTGAGAATTA-TCGTCGTTCAATCTACGCGAAATCT 1050
Query 1105 GCAAAATCTAGGATTCGAGAACTATCTAACATCGAAGGGC-TC--GAGATGGAAATAAGA 1161
||||||||| | || || ||| || ||| ||| ||||| | || | ||||||| | |||
Sbjct 1051 GCAAAATCTCGCATCCGTGAATTAGCTAGCATTGAAGGACATCATGGGATGGAAGTGAGA 1110
Query 1162 AAAGGAAGTGAAGCAACCTGGTGGAAACAACTTAGGACATTAACAGCA-AGATCATTCAT 1220
|| ||||| ||||| || |||| ||||| || || || || ||| | |||||||| |
Sbjct 1111 AAGGGAAGCGAAGCGACGTGGTTTAAACAGCTAAGAACTTTGACA-AAGAGATCATTTGT 1169
Query 1221 AAACATGTGTCGTGATGTCGGTTACTATTGGACACGAATAATAAGCTACATTGTTGTTTC 1280
|||||| || ||| | || ||||||||| || |||| | | ||| ||||| || ||
Sbjct 1170 GAACATGACCCGCGATATTGGATACTATTGGTCAAGAATTGTGATCTATATTGTGGTATC 1229
Query 1281 TA-TAAGCGTAGGAACCATCTTCTACGACGT-TGGCTATAGCTACACATCAATCTTAGCC 1338
| | |||| || || ||||| ||||| || ||| ||||||||||||| ||||| ||
Sbjct 1230 -ATTCTGCGTCGGGACAATCTTTTACGATGTAGGGC-ATAGCTACACATCGATCTTGGCT 1287
Query 1339 CGTGTTTCTTGCGGCGGATTCATCACTGGTTTCATGACTTTCATGTCCATTGGAGGCTTC 1398
|| |||||||| || |||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 1288 CGGGTTTCTTGTGGTGGATTCATTACCGGTTTCATGACTTTCATGTCCATTGGAGGGTTT 1347
Query 1399 CCTTCTTTCCTCGAAGAAATGAAGGTGTTCTATAAGGAGAGGCTAAGTGGATACTACGGC 1458
||||||||| | ||||||||||| ||||||||||| ||||| | ||||| ||||||||
Sbjct 1348 CCTTCTTTCATTGAAGAAATGAAAGTGTTCTATAAAGAGAGATTGAGTGGTTACTACGGT 1407
Query 1459 GTTTCGGTTTATATCCTCTCGAATTACATCTCTTCTTTCCCTTTCTTGGTTGCGATTTCG 1518
||||||||||||||| | ||||||||| ||||||||||||| |||||||| |||||| ||
Sbjct 1408 GTTTCGGTTTATATCATATCGAATTACGTCTCTTCTTTCCCGTTCTTGGTAGCGATTGCG 1467
Query 1519 GTTATCACAGGAACTATTACTTACAACTTGGTGAAGTTTCGTCCCGGGTTCTCGCATTAC 1578
| |||||||| | ||||||||||||| ||||||| || ||||| ||| ||||| |||
Sbjct 1468 CTCATCACAGGGAGTATTACTTACAACATGGTGAAATTCCGTCCTGGGGTCTCGTATTGG 1527
Query 1579 GCTTTCTTCTGTCTCAACATCTTCTTCTCAGTTTCCGTGATAGAGAGTCTCATGATGGTT 1638
|||||||||||||||||||| |||||||| || || || || ||||||||||||||||||
Sbjct 1528 GCTTTCTTCTGTCTCAACATATTCTTCTCTGTCTCAGTCATTGAGAGTCTCATGATGGTT 1587
Query 1639 GTGGCTTCTGTTGTTCCAAACTTCTTGATGGGTCTTATCACTGGAGCTGGCCTCATTGGA 1698
||||||||| |||||||||| |||||||||||||| ||||| ||||| ||| ||||||||
Sbjct 1588 GTGGCTTCTCTTGTTCCAAATTTCTTGATGGGTCTAATCACAGGAGCAGGCATCATTGGA 1647
Query 1699 ATCATCATGATGACTTCTGGATTCTTCCGTCTT-CTTCCTGATCTTCCCAAAA-TCTTT- 1755
|||||||||||||||||||||||||||||| || ||||| |||||||| ||| | |||
Sbjct 1648 ATCATCATGATGACTTCTGGATTCTTCCGT-TTGCTTCCCGATCTTCC-AAAGGT-TTTC 1704
Query 1756 TGGCGTTACCCGGTTTC-TTACATAAGCTACGGTTCTTGGGCTATCCAGGGAGGGTACAA 1814
||||| |||||| |||| || ||| || || |||||||||||||| ||||||| |||||
Sbjct 1705 TGGCGCTACCCGATTTCCTT-CATGAGTTATGGTTCTTGGGCTATTCAGGGAGCATACAA 1763
Query 1815 GAATGACTTTCTAGGGCTAGAGTTCGAGCC-ATTGTTCCCGGGTGAGCCGAAAATGACAG 1873
||| || ||||| || ||||||||||| || || ||| |||| || || || |||||||
Sbjct 1764 GAACGATTTTCTTGGTCTAGAGTTCGACCCGAT-GTTTGCGGGGGAACCCAAGATGACAG 1822
Query 1874 GAGAGGAAGTGATAGAGAAGGTCTTTGGAGTG-AAGGTGACATATTCAAAATGGTGGGAC 1932
||||| |||||||| | ||| | || |||||| ||| | ||| |||| || |||||||||
Sbjct 1823 GAGAGCAAGTGATAAACAAGATATTCGGAGTGCAAG-TCACACATTCTAAGTGGTGGGAC 1881
Query 1933 TTAGCTGCGGTAGTAGCA-ATCCTTGTGTGTTACAGGC-TTCTCTTCTTCGTGGTTCTA- 1989
||| | ||| | || | ||||||||||||||| | | ||||||||||| | || ||
Sbjct 1882 TTATCAGCGATCGT-GTTGATCCTTGTGTGTTACCG-CATTCTCTTCTTCATAGT-CTTG 1938
Query 1990 AAGCTGAGGGAGAGAGCAG-GACCTGCTTTGAAGGCGATTCAGGCGAAA-AGAACGATGA 2047
||||| | ||||||||||| | || |||||||||||||| || || ||| ||||||||||
Sbjct 1939 AAGCTTAAGGAGAGAGCAGAG-CCGGCTTTGAAGGCGATACAAGC-AAAGAGAACGATGA 1996
Query 2048 GGAATCTTGATAGGAGACCTTCTTTTAAGAGAATGCCTTCTCTGTCTCTTTCACTGTCGT 2107
|| ||| | | |||||| ||||| |||| || | ||| | ||||| || | ||
Sbjct 1997 AGACTCTCAAAAAGAGACCGTCTTTCAAGA-AA-G--TTC-CA-TCTCTATC--T-TCA- 2046
Query 2108 CAATGTCTTCAAGGAGACACCAACCTCTCCGCTCACTTTCTTCTCAAGAAGGCCTTAACT 2167
| || |||||||||||||||||||||| | ||||||||||||||||||||| |||| ||
Sbjct 2047 CTAT--CTTCAAGGAGACACCAACCTCTACACTCACTTTCTTCTCAAGAAGGTCTTACCT 2104
Query 2168 CTCC 2171
||||
Sbjct 2105 CTCC 2108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84446073165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5