BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21100.2
Length=2221
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479629 jgi|Araly1|479629|fgenesh2_kg.3__2330__AT3G21100.2 3567 0.0
Ahg474265 jgi|Araly1|474265|fgenesh2_kg.1__4219__AT1G51520.1 531 1e-149
> Ahg479629 jgi|Araly1|479629|fgenesh2_kg.3__2330__AT3G21100.2
Length=2226
Score = 3567 bits (1931), Expect = 0.0
Identities = 2137/2233 (96%), Gaps = 27/2233 (1%)
Strand=Plus/Plus
Query 1 TTACTGTGACCATGGATCCAGGAGATCCTACTTCGATACTTTTCACAAAGATCAGAACTT 60
||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTACTCTGAATATGGATCCGGGAGATCCTACTTCGATACTTTTCACAAAGATCAGAACTT 60
Query 61 TAGAACCAGATTTCGCTTCCAAAATCATTGGTTACTTGCTTTTACAGGACTTGGGTAAGA 120
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TAGAACCAGACTTCGCTTCAAAAATCATTGGTTACTTGCTTTTACAGGACTTGGGTACGA 120
Query 121 CAGATTTGATGCGTTTGGCTCTTGGACCAGAGACTCTCTTGCAGTCCGTTTGTCTCAAAG 180
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 GAGATTTGATGCGTTTGGCTCTTGGACCAGACACTCTCTTGCAGTCCGTTTGTCTCAAAG 180
Query 181 CTAAATCTGCTTTAGGTCTTTCTTCTAATGGATCTTCTTCTGCTTCTTCGCCATTGAACC 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 CTAAATCTGCTTTAGGTCTTTCTTCTAATGGATCTTCTTCTGCTTCGTCGCCATTGAACC 240
Query 241 CTATCTCCAGACCCATTAACATCCACCGTCATTCTCTCTCTCACTCTTCACCGGGAAA-- 298
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 241 CTATCTCCAGACCCATTAACATCCACCGTCATTCTCTGTCTCAGTCTTCACCGGGAAATG 300
Query 299 ------TGG-GTTTTCGAGG---AACCCTTTGTCTCCTTCTTTTG-CTACTCCTGGTTCA 347
||| |||||||||| ||||||||||||||||| |||| ||||||||||||||
Sbjct 301 GGTTTGTGGAGTTTTCGAGGAACAACCCTTTGTCTCCTTC-TTTGACTACTCCTGGTTCA 359
Query 348 CTCGGAAGTAACCCTAACATGATTTCGAGTCCGTTTCAAGCAAGTTCGTCTCTTTTTGCT 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTCGGAAGTAACCCTAACATGATTTCGAGTCCGTTTCAAGCAAGTTCGTCTCTTTTTGCT 419
Query 408 TCTGACGGTGCTGCTGCTGGTGATTCCACTGGAAACGGCGATTTCCTCGATGAGCAGCAA 467
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCTAACGGTGGTGCTGCTGGTGATTCCACTGGAAACGGCGATTTCCTCGATGAGCAGCAA 479
Query 468 CTAGGGAACTACTTGTCGTTTCTTAACGAATCTTCTTCGAAGAATAACGACGAATCTCTG 527
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 CTAGGGAACTACTTGTCGTTTCTTAACGAGTCTTCTTCGAAGAATAACGACGAATCTCTG 539
Query 528 GATCCGTTTGGGTTCTCGGCTGATAACGGCGATGCCCATTTGCATAAGAGGAGTTTCTCA 587
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 GATCCGTTTGGGTTCTCTGCTGATAATGGCGATGCCCATTTGCATAAGAGGAGTTTCTCT 599
Query 588 GCCAGTGATGCTTGTTTTGGGTCAGAGGAGCCCGGATTTGGTGGCGGGGGTTACAACAGG 647
||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 600 GCCAGTGATGCTTGTTTCGGGTCAGAGGAGCCCGGATTTGGCGGCGGCGGTTACAATAGG 659
Query 648 TTCCTTCACGGTGGTTTAGGTGATGATTTTGATTCTCCTGGTGGTTTTGGCTCGCCGGAT 707
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTCCCTCACGGTGGTTTAGGTGATGATTTTGATTCTCCTGGTGGTTTTGGCTCGCCGGAT 719
Query 708 TATGTTTCTAGACAGCAAGAGGAGATTGTGAGGATGAAGATGGCTCAGAGACAGCGAATG 767
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 720 TATGTTTCCAGACAGCAAGAGGAGATGGTGAGGATGAAGATGGCTCAGAGGCAGCGAATG 779
Query 768 GCTGCTGCTCAGTACTTGGCGGCTACTGGTTCTCCAATGTCGTATGAGAAAGGCCTCAAT 827
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 780 GCCGCTGCTCAGTACTTGGCGGCTACTGGTTCTCCAATGTCGTATGAAAAAGGCCTCAAT 839
Query 828 TTTCTCTTGCATCAGCGTAATGCGCATAGATCAGGAGCAGGACAATTTGGGGAAGAGGGT 887
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 840 TTTCTCTTGCATCAACGTAATGCGCATAGATCAGGAGCAGGACAATATGGGGAAGAGGGT 899
Query 888 TACTGGTTTGGTAGTCCAGGCCGGCATGAAAGGGATGAGTTTATGGGGATGGGAGATAAA 947
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 900 TACTGGTTTGGTAGTCCAGGCCGGCATGAAAGGGATGAGTTTATGGGAATGGGAGATAAA 959
Query 948 TCTAACTCTGCATCTAAACAGATTTACTTGACATTTCCAGCTGACAGCTCCTTCACAGAT 1007
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TCTAACTCTGCTTCTAAACAGATTTACTTGACATTTCCAGCTGACAGCTCCTTCACAGAT 1019
Query 1008 GAAGATGTCTCCAATTATTTTGGCAATTTTGGACCAGTGCAAGATGTTAGGATTCCATAC 1067
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1020 GAAGATGTCTCCAATTATTTTGGCACTTTTGGACCAGTGCAAGATGTTAGGATTCCATAC 1079
Query 1068 CAGCAGAAACGGATGTTTGGGTTTGTCACTTTTCTCCACTCTGAAACTGTGAGAATCATA 1127
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1080 CAGCAGAAACGGATGTTTGGGTTTGTCACTTTTGTCCACTCTGAAACTGTGAGAATCATA 1139
Query 1128 TTGGCCAGAGGAAATCCTCATTTCATCTGTGACTCACGTGTGCTTGTTAAACCGTACAAG 1187
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1140 TTGGCTAGAGGAAATCCTCATTTCATCTGTGACTCACGTGTGCTCGTTAAACCGTACAAG 1199
Query 1188 GAGAAGGGAAGAATCCTTGAAAAGAGGCAGCAGCAACAACTGCTGCAGCAGATGGAGAGA 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GAGAAGGGAAGAATCCTTGAAAAGAGGCAGCAGCAACAACTGCTGCAGCAGATGGAGAGA 1259
Query 1248 GGAAACTTTTCTCCTGGTTCAAGTCCATCTGGAATGGATTCCAGGGATCTCTTTGATTCT 1307
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1260 GGAAACTTTTCTCCTGGTTCAAGTCCATCTGGAATGGATTCCAGGGATCTCTTTGAATCT 1319
Query 1308 CATCTCGCACCAAGGATGTTTTCTAACACACAGGAGATGATGAGGAGAAAAGCTGAGCAA 1367
| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1320 CTTCTCTCACCAAGGATGTTTTCGAACACACAGGAGATGATGAGGAGAAAAGCTGAGCAA 1379
Query 1368 GCTGACCTGCAACAAGCAATAGAATTCCAAAGGAGAAGATTTTTGAGTCTGCAGTTGCCC 1427
||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||
Sbjct 1380 GCTGACCTGCAACAAGCAATAGAATTCCAGAGGAGAAGATTTCTGAATCTGCAGTTGCCC 1439
Query 1428 GACATGGACAGTGAATCGTTTCTCCATCACCAGCGTAGTCTTTCCATTGGATCCCCCGTC 1487
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1440 GACATGGACAGTGAATCGTTTCTCCATCACCAGCGTAGTCTTTCTATTGGATCTCCCGTT 1499
Query 1488 CATTTTTCCCCTCGTGTCAATCAAAGCATGCTCTTTCGATCAGAAAGCACCAGTGATGAA 1547
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1500 CATTTTTCCCCTCGTGTCAATCAAAGCATGCTCTTTCGATCAGAAAACACCAGTGATGAA 1559
Query 1548 GTCTTCGAAGGTAATGGTGATTCAGGACAT---CAGTCTGAAGCAACCCGAGCTTTTCTG 1604
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1560 GTCTTCGAAGGTAATGGTGATTCAGGACATTTTCAGTCTGAAGCAACCCGAGCTTTTCTG 1619
Query 1605 AGTGATACTGGTCATAACATCAGCCAAGAACGTGGTTACAATAGCCATCTTAACAAAGGG 1664
|||||||||||||| |||| |||||||||||||| |||||||| |||||| |||||||||
Sbjct 1620 AGTGATACTGGTCACAACAGCAGCCAAGAACGTGTTTACAATAACCATCTCAACAAAGGG 1679
Query 1665 CAAGAGACAAGTCTGGAGAATACTCTGCCTGATAGCTTCTTTGCTTCCCCATCAAAGACA 1724
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1680 CAAGAGACAAGTCTGGAGAACGCTCTGCCTGATAGCTTCTTTGCTTCCCCATCGAAGACC 1739
Query 1725 GGTGAAACCCAACACCCCGAGTTTGAGAAAGAGAATTGTGCTACTA-TCTCTGTTACTAC 1783
|||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct 1740 GGTGAAACCCAACACCCCGAGTTTGAGAAAGAGAATTGTGCTAC-ACTCGCTGTTACTAC 1798
Query 1784 AGAAAATAAGGCAGCCTCGTCACTTCAATCAGCCTAGCAATTGGTTCGATAGAAGCAGAG 1843
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1799 AGAAAATAAGGCAGCCTCGTCAATTCAATCAGCCTAGCAATTGGTTCGATAGAAGCAG-G 1857
Query 1844 A-GAAAGCGTGAAAAGTTTCTTTGGTTGCAGAAAAGTAGAGACTGATAAAAGCAGGAAGT 1902
| ||||| | |||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1858 AAGAAAGTGAGAAAAGTTTCTTTGGTTGCAGAAAAGTAGAGACTGATAAAAGGAAGAAGT 1917
Query 1903 AGAAGAATTTTGTCTATATGTAGAAGCTAAAGCCGGTTATATAACATGGAACAGAAAGAA 1962
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1918 AGAAGAATTTTGTCTATATGTAGAAGCTAAAGAAGGTTTTATAACATGGAACAGAAAGAA 1977
Query 1963 GGGTAGGGAGACCAGTTAGGATTTTACATATCTCGAAAAAGGCAGTTGTGGAATGCCAAT 2022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 GGGTAGGGAGACCAGTTAGGATTTTACATATCTCGAAAAAGGCAGTTGTGGAATGCCAAT 2037
Query 2023 ATGCAATAGAAATT-ACAGCTAAGTACTAACCTCGACAAAAGCATTGATAGGCAGAACAA 2081
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2038 CTGCAATAGAAATTTACAGCTAAGTACTAACCTCGACAAA-GCATTGATAGGCAGAACAA 2096
Query 2082 TACAGTGACTGAAACCTTCAAGTTTTAAGTTTTTCGTCTGTTCATCGATGATTGTTTTAC 2141
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2097 TACAGTGACTGAAACCTTCAAGTTTTAAGTTTC-CGTCTGTTCATCGATGATTGTTT-AC 2154
Query 2142 CTTTTTACCGGGTCACAAGCCCTGGTT-TGGGACAAGGCTACTTCAGTTGTCAATATAGA 2200
||||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 2155 CTTTTTACCAGGTCATAAGCCCTGGTTCTGG-ACAAGGCTACTTCAGTTGTCAATATAGA 2213
Query 2201 TGAATGTCttttt 2213
|||||||||||||
Sbjct 2214 TGAATGTCTTTTT 2226
> Ahg474265 jgi|Araly1|474265|fgenesh2_kg.1__4219__AT1G51520.1
Length=2007
Score = 531 bits (287), Expect = 1e-149
Identities = 648/814 (80%), Gaps = 57/814 (7%)
Strand=Plus/Plus
Query 960 TCTAAACAGATTTACTTGACATTTCCAGCTGACAGCTCCTTCACAGATGAAGATGTCTCC 1019
||||||||||||||||||||||||||| |||| ||||||||||| |||||||| |||||
Sbjct 883 TCTAAACAGATTTACTTGACATTTCCATCTGAAAGCTCCTTCACTGATGAAGACGTCTC- 941
Query 1020 AA-TTATTTTGGCAATTTTGGACCAGTGCAAGATGTTAGGATTCCATACCAGCAGAAACG 1078
|| |||||| | |||||||||| ||| ||||||| ||||||||||| |||||| ||||
Sbjct 942 AACTTATTTCAGTGATTTTGGACCTGTGGAAGATGTGAGGATTCCATATCAGCAGCAACG 1001
Query 1079 GATGTTTGGGTTTGTCACTTTTCTCCACT-CTGAAACTGTGAGAATCATATTGGC-CAGA 1136
|||||||||||||||||||||| ||| ||||||| ||||||| |||||| || | ||
Sbjct 1002 GATGTTTGGGTTTGTCACTTTTG-CCAAGGCTGAAACCGTGAGAACCATATTAGCTC-GA 1059
Query 1137 GGAAATCCTCATTTCATCTGTGACTCACGTGTGCTTGTTAAACCGTACAAGGAGAAGGGA 1196
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 1060 GGAAATCCTCATTTCATCTGTGACTCACGTGTGCTCGTTAAACCATACAAGGAGAAAGGA 1119
Query 1197 AGAATCCTTGAAAAGAGGCAGCAGCAACAACTGCT-GCAGCAGATGGAGAGAGGAAACTT 1255
| ||||||| |||||||||||||||| ||||| | | ||| | |||||||||| ||||
Sbjct 1120 AAAATCCTTCAAAAGAGGCAGCAGCAGCAACTACACG-AGCTGTTGGAGAGAGGGAACTA 1178
Query 1256 TTCTCCTGGTTCAAGTCCATCTGGAATGGATTCCAGGGATCTCTTTGATTCTCATCTC-G 1314
||| ||| ||||||||| ||||||||||| || ||||| || | ||| | || || |
Sbjct 1179 TTCACCTTCTTCAAGTCCTTCTGGAATGGACTCAAGGGAACTATATGAATGTCG-CTTAG 1237
Query 1315 CACCAAGGATGTTTTCTAACA---CACAGGAGATGATGAGGAGAAAAGCTGAGCAAGCTG 1371
||||||||||||||| |||| ||||||||||| || | |||||| | ||||||||||
Sbjct 1238 GACCAAGGATGTTTTCAAACAAGACACAGGAGATGCTGCGAAGAAAAACCGAGCAAGCTG 1297
Query 1372 ACCTGCAACAAGCAATAGAA-T-----TCCAAAGGAGAAGATTTTTGAGTCTGCAGTTGC 1425
| | |||||||| |||||| | ||||||| ||||| || |||| |||||| ||||
Sbjct 1298 ATTTACAACAAGCCATAGAAGTAGAACTCCAAAGAAGAAGGTTCTTGAATCTGCAATTGC 1357
Query 1426 CCGACATGGACAGTGAATCGT-TTCTCCATCACCAGCGTAGTCTTTCCATTGGATCCCCC 1484
| |||||||| | |||||| | ||| ||||||||||||||||| ||| ||||| || |||
Sbjct 1358 CTGACATGGAGAATGAATC-TATTCACCATCACCAGCGTAGTCCTTCTATTGGTTCTCCC 1416
Query 1485 GTC-CATTTTTCC-CCTCG-TGTCAATCAAAG-CATGCTCTTTCGATCAG-AAAGCACCA 1539
|| |||||| || ||||| | ||||||| || | | ||||||| ||||| ||| || ||
Sbjct 1417 -TCTCATTTT-CCGCCTCGAT-TCAATCATAGTCTT-CTCTTTCAATCAGGAAA-CAACA 1471
Query 1540 GTGATGAAGTCTTCGAAGGTAATGGTGATTCAGGACATCAGTCTGAAGCAACCCGAGCTT 1599
|| ||| || | |||||| || | | ||| | || ||| | || || |
Sbjct 1472 ACGAAGAAATCGTGGAAGGT--TGAC-AGT--GGA-AG-AGG-TGA-GAAA---GA--TG 1517
Query 1600 TTCTGAGTGATACTGGTCATAACATCAGCCAAGAACGTGGTTACAATAGCCATCT-TAAC 1658
||| || | | | | || | || || |||||||||| |||| || | || | || |
Sbjct 1518 TTC--AGC-A-AGTAG-CA-ACCAGCAATGAAGAACGTGGCTACAGTAACGATTTCTACC 1571
Query 1659 AAAGGGCAAGAGACAAGTCTGGAGAATACTCTGCCTGATAGCTTCTTTGCTTCCCCATCA 1718
|| ||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||| |
Sbjct 1572 AA-GGGCAAGAGACGAGTCTGGAGAATACTCTTCCTGATAGCTTGTTTGGTTCCCCAAAA 1630
Query 1719 AAGA-CAGGTGAAACCCAAC-ACCCCGAGTTTGA 1750
|| | | ||||||||| ||| | |||||| |||
Sbjct 1631 AA-ATCCGGTGAAACC-AACCAAACCGAGTCTGA 1662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83608087775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5