BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21110.1
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930058 jgi|Araly1|930058|scaffold_302515.1 2111 0.0
> Ahg930058 jgi|Araly1|930058|scaffold_302515.1
Length=1276
Score = 2111 bits (1143), Expect = 0.0
Identities = 1226/1267 (97%), Gaps = 2/1267 (0%)
Strand=Plus/Plus
Query 250 TGTTTCTGGAATGGCTCAGTGTGTGAGGTCAACTCTAAATCCTGTGAGAACACCCCAGAG 309
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||
Sbjct 11 TGTTTCTGGAATGGCTCAGTGTGTAAGGTCAACTCTAAATCCTTTGAGAACACCCCACAG 70
Query 310 CTTTACTAGGAAAGCGTATGTGAAAAGCCCAGCTTTTGCATCAGTCTCGTTCCTTCGAGC 369
| ||||||||| || || ||| |||| |||||||||||||||||||||||||||| || |
Sbjct 71 CGTTACTAGGACAGTGTCTGTAAAAAACCCAGCTTTTGCATCAGTCTCGTTCCTTAGAAC 130
Query 370 AGTACCGGAGTTCAACAAATACCCAAAACCTTGTTCATTGGTTATGTCTTGCCAGGGCAA 429
| ||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 131 ATTACCGGAGTTCAAGAAATATCCAAAACCCTGTTCATTGGTTATGTCTTGCCAGGGCAA 190
Query 430 GGCT-CAAAACCAGCAGGAGGAGCGACCACAACTGTCTCTTGACGATTTAGTCACGAGTA 488
|| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 191 GG-TCCAAAACCAGCAGGAGGAGCGACCGCAACTGTCTCTTGACGATTTAGTCACGAGTA 249
Query 489 ACCGGAAAGGGGAGGTTCTTGGCACAATCAAAGACTCGCTTTCTAATTGTCTCTCTGAGA 548
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 ACCGGAAAGGAGAGGTTCTTGGCACAATCAAAGACTCGCTTTCTAATTGTCTCTCTGAGA 309
Query 549 CTAATCTTCTTGCCACTGTTCCTGGTCTGAAATCTAGAATCAAGGGAAAGGTCAGAGATA 608
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CGAATCTTCTTGCGACTGTTCCTGGTCTGAAATCTAGAATCAAGGGAAAGGTCAGAGATA 369
Query 609 TTTATGATGCTGGTGATTATCTGGTTCTTATTACAACTGATCGGTTGAGTGCATTCGACA 668
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 370 TTTATGATGCTGGTGATTATCTGATTCTTATTACAACTGATCGGTTGAGTGCATTTGACA 429
Query 669 GAAACCTTGCTTCAATTCCCTTCAAAGGCCAGGTTCTTAATGAGACAAGTTTGTGGTGGT 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GAAACCTTGCTTCAATTCCCTTCAAAGGCCAGGTTCTTAATGAGACAAGTTTGTGGTGGT 489
Query 729 TCAATAACACACAGCACATAACTCCAAATGCAATCGTTTCATCTCCTGATAGAAATGTTG 788
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 490 TCAATAACACACAGCACATAACTCCAAATGCCATCGTTTCATCTCCTGATAGAAATGTTG 549
Query 789 TTATCGCAAAGAAATGCTCGGTTTTTCCCATAGAGTTTGTGGTTAGAGGATATGTGACTG 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TTATCGCAAAGAAATGCTCGGTTTTTCCCATAGAGTTTGTGGTTAGAGGATATGTGACTG 609
Query 849 GAAGTACTGACACATCTTTATGGACGGTGTACAATAAAGGTGTTCGGAACTACTGTGGGA 908
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 610 GAAGTACTGACACGTCTTTATGGACGGTGTACAATAAAGGTGTTCGGAACTATTGTGGGA 669
Query 909 ATGAGCTCTCAGATGGATTAGTTAAAAACCAGAAGCTTCCAGCTAATATACTTACACCAA 968
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 670 ATGAGCTCTCAGATGGATTAGTAAAAAACCAGAAGCTTCCAGCTAATATACTTACACCAA 729
Query 969 CAACTAAGGCTGCGGATCATGATGTGCCCATCTCTCCAAATGAGATAGTTGAAGGTGGAT 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 730 CAACTAAGGCTGCGGATCATGATGTGCCCATCTCTCCAAATGAGATAGTTGAACGTGGAT 789
Query 1029 TCATGACTCAAGCTGAATTTGATGAAGCAAGTATGAAAGCTTTGAGCTTGTTTGAGTTTG 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 TCATGACTCAAGCTGAATTTGATGAAGCAAGTATGAAAGCTTTGAGCTTGTTTGAGTTTG 849
Query 1089 GGCAGGGGGTGGCCAAGAAACATGGACTGATATTGGTGGACACAAAGTATGAGTTTGGAA 1148
||||| | || |||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 850 GGCAGCGTGTTGCCAAGGAACATGGACTGATACTGGTGGACACAAAGTATGAGTTTGGAA 909
Query 1149 GAAGTAGTGATGGCTCAATCTTATTGATTGATGAGATTCATACACCCGATTCCAGCAGAT 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 GAAGTAGTGATGGCTCAATCTTATTGATTGATGAGATTCATACACCCGATTCCAGCAGAT 969
Query 1209 ACTGGCTTGCGGGTTCATATGAAGAGCGCTTCCAAAAAGGCCTGGAGCCTGAAAATGTTG 1268
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 970 ACTGGCTTGCGGGTTCATATGAGGAGCGCTTCCAAAAAGGCCTGGAGCCTGAAAATGTTG 1029
Query 1269 ATAAGGAGTTCCTAAGATTGTGGTTCAAAGAGAACTGCAATCCGTATGAGGACGAGGTCC 1328
|||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct 1030 ATAAGGAGTTCCTAAGATTGTGGTTCAAAGAGAACTCCAATCCTTACGAGGACGAGGTCC 1089
Query 1329 TGCCTGCTGCTCCAGCAGAACTCGTGACTGAATTAGCTTGGCGGTACATTTTCTTGTATG 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 TGCCTGCTGCTCCAGCAGAACTCGTGACTGAATTAGCTTGGCGGTACATTTTCTTGTATG 1149
Query 1389 AAACTATCACTGGATCAAGAATTGACATTATTCCGACTCAGGAACCAATACATGACCGAA 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 AAACTATCACTGGATCAAGAATTGACATTATTCCGACTCAGGAACCAATACATGACCGAA 1209
Query 1449 TCTCAAGGAACACAAGCCAAGCACTTTCATCTCTCCGTCAACTTTGATCTTTAATGTAAC 1508
||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1210 TCTCAAGAAACACAAGCCAAGCACTTTCATCTCTCCGTCAACTTTGATCTTTTATATAAC 1269
Query 1509 CTTTAGC 1515
||||||
Sbjct 1270 TTTTAGC 1276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64143972580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5