BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21120.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905131 jgi|Araly1|905131|Al_scaffold_0003_2259 564 5e-160
Ahg323223 jgi|Araly1|323223|fgenesh1_pm.C_scaffold_5000767 359 3e-98
Ahg318995 jgi|Araly1|318995|fgenesh1_pm.C_scaffold_3002011 65.8 7e-10
Ahg930816 jgi|Araly1|930816|scaffold_303273.1 60.2 3e-08
Ahg479334 jgi|Araly1|479334|fgenesh2_kg.3__2035__AT2G07130.1 58.4 1e-07
Ahg929149 jgi|Araly1|929149|scaffold_301606.1 52.8 5e-06
Ahg895515 jgi|Araly1|895515|Al_scaffold_0006_3511 52.8 5e-06
> Ahg905131 jgi|Araly1|905131|Al_scaffold_0003_2259
Length=1794
Score = 564 bits (305), Expect = 5e-160
Identities = 662/827 (80%), Gaps = 54/827 (7%)
Strand=Plus/Plus
Query 1 ATGCATCTTCCGGAGGATTTGGTCCTGGAGATACTCTCTAAGGTTCCGGCTGTA---TCT 57
||||||||||||||||||||||| ||||||||||||||| |||||| ||||| |||
Sbjct 1 ATGCATCTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGGGTTCCTACTGTATCTTCT 60
Query 58 CTGGCACGATTTCGATCGACTTGCAGAAGATGGAACGCTCTGGTCGTCGATGGAAG-CTT 116
||||||||||| |||||||| | || |||||||||| |||||||| ||||| || | |
Sbjct 61 CTGGCACGATTGCGATCGACATCCAAAAGATGGAACACTCTGGTCAAAGATGGGAGAC-T 119
Query 117 TGCTAAGAAGCACTATGCGTACGGTCCAAGGCAGTATCCTATAGTTATTATGTTGATCGA 176
|||||||||||||| ||| |||| ||||||||||| |||| | ||||| |||||||| |
Sbjct 120 TGCTAAGAAGCACTCTGCTTACGCTCCAAGGCAGTCTCCTCTGGTTATCATGTTGATTAA 179
Query 177 GTTTAGGGTTTATTTAGTGAGTATAGATCTCCATGGAATTAACAATAACAACGGTGCCCC 236
||||||||||||||||| | || ||| || | ||||||||||| | ||||
Sbjct 180 TTTTAGGGTTTATTTAGT--G---AG-----CAT-CAA-TCTCAATAACAACGTTCCCCC 227
Query 237 ATCTGCGAAGCTAACAGGTCAATTCAGCCTAAAAGACCCTCTTTCTAATTCTT-CAGAAG 295
|||||| ||| ||||| ||||||||||| ||||||| |||||||||| || || || |||
Sbjct 228 ATCTGCAAAGGTAACATGTCAATTCAGCTTAAAAGATCCTCTTTCTATTTTTTCCA-AAG 286
Query 296 AAGTTGATATACGTAACGCCTTTCAC-TGCGACGGCTTATTGCTATGCTGTACCAAAGAC 354
|| | |||||||||| | |||||||| || |||||||||||||||||| ||||||||||
Sbjct 287 AAATCGATATACGTAGCACCTTTCACTTG-GACGGCTTATTGCTATGCAATACCAAAGAC 345
Query 355 AGGAGATTGGTTGTTTGGAATCCATGTTCAGGGGAAACCAAG-TGGATCCAACCCAGAAA 413
| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||| |
Sbjct 346 AATAGATTGGTTGTTTGGAATCCATGTTCAGGTGAAAC-AAGGTGGATCCAACCTAGATA 404
Query 414 TTCCTACAAGGAATCAGACT-TATATGCCCTAGGTTACGATAACAGATCCTCCTCCTACA 472
|||||||||||| || |||| | ||||| || ||||||||||||| |||||||| ||||
Sbjct 405 TTCCTACAAGGATTCCGACTGT-TATGCTCTCGGTTACGATAACAAATCCTCCTGTTACA 463
Query 473 AAATCTTGAGGATGCATCCC------GTTGGTAACCCATTTCACATTGAGTCCGAAGTCT 526
|||||||||||||||||| ||||||||| ||| |||||||||||||||||||
Sbjct 464 AAATCTTGAGGATGCATCGATTTTTTGTTGGTAACATATTGCACATTGAGTCCGAAGTCT 523
Query 527 ATGACTTTGCTTCTCATTCGTGGAGAAGTGTTGGTGTGACTACC-GACTTCCACATA-CA 584
|||||||||||||||||||||||||| ||||||||| | ||||| | || |||| ||
Sbjct 524 ATGACTTTGCTTCTCATTCGTGGAGAGGTGTTGGTGAGTCTACCAG-CTGGTTCATAACA 582
Query 585 AACGAATGAGA-GT--TA-TGGCATGAATGTCAAGGGAACTACTTACTGGTTTGCTCTTA 640
| || | || || | |||| || ||| ||||||| |||||||||| ||||| |
Sbjct 583 CA-GATT-AGTTGTCGTCGTGGCGTGTGTGTGAAGGGAAATACTTACTGGCTTGCTGGTG 640
Query 641 GTAAAGACTGGTGGTCATCTGACGATCG-TCGTTTCTTACTAAGTTTTGATTTTTCAAGA 699
|| || || | | | | || || | || |||||||||| |||| |||||||||||
Sbjct 641 GTCAATAC-GA-GC-CG-C-GAA-AT-GATCATTTCTTACTACGTTTCGATTTTTCAAGT 693
Query 700 GAGAGATTTCAATGTCTGCCTCTTCCGGCGGATG-T--TAAAAATCTACATCTTACTGTG 756
|||||||| |||| |||| |||| || ||||||| | | || || | || | ||
Sbjct 694 GAGAGATTCCAATTTCTGTCTCTCCCAGCGGATGCTCGTCGTGAT-TA--TGGTAATATG 750
Query 757 GTTTTATCGGTGACTAGAGAAGAGCAACAACTATGTATGTTTGCTAC 803
| |||||| ||||||| |||| | |||||||| ||| || | |||||
Sbjct 751 GCTTTATCAGTGACTAAAGAAAATCAACAACTTTGTTTGCTAGCTAC 797
> Ahg323223 jgi|Araly1|323223|fgenesh1_pm.C_scaffold_5000767
Length=1083
Score = 359 bits (194), Expect = 3e-98
Identities = 703/933 (75%), Gaps = 98/933 (11%)
Strand=Plus/Plus
Query 5 ATCTTCCGGAGGATTTGGTCCTGGAGATACTCTCTAAG-GTTCCGGCTG-TATCTCTGGC 62
|||||||||| |||||| | | ||||| || ||| || |||||||| | |||||| |
Sbjct 32 ATCTTCCGGAAGATTTGCTAGTCGAGATTCTTTCT-AGAGTTCCGGC-GAAATCTCTAGT 89
Query 63 ACGATTTCGATCGAC-TTGCAGAAGATGGAACGCTCTGGTCGTCGATGGAAGCTTTGCTA 121
|||||| ||||| || | | | ||||||||||||||| || ||||| || |||||||
Sbjct 90 ACGATTACGATCAACATCG-AAAAGATGGAACGCTCTTGTAAAAGATGGGAGATTTGCTA 148
Query 122 AGAAGCACTATGCGT-ACGGTCCAAGGCAGTATC-CTATAGTTATTATGTTGATC-GAGT 178
||||||||||||| | | ||||| ||| | | || ||||| | ||| | | | | |
Sbjct 149 AGAAGCACTATGC-TAATACTCCAAAGCACT-CCTCTCTAGTTCTCATGGT-AACTAATT 205
Query 179 TTAGGGTTTATTTAGTGA--G-T-ATAGATCTCCATGGAATTAACAATAACAACGGTGCC 234
|||||||||| ||||||| | | || |||||||||| ||| | | || ||
Sbjct 206 TTAGGGTTTACTTAGTGAGCGTTGAT-TATCTCCATGG---TAA-AGT---TAC--TG-- 253
Query 235 CCATCTGCGAAGCTAACAGGTCAATTCAGCCTAAAAGACCCTCTTTCTAATTCTTCAGAA 294
|| ||||| ||| ||||| ||||||||| | || |||| || ||| ||| | ||
Sbjct 254 CC-TCTGCAAAGATAACAAGTCAATTCAACTTACAAGA---TC-ATCT--TTC--GA-AA 303
Query 295 GAAGTTGATATACGTAACGCCTTTCACTGCGACGGCTTA-TTGCTATGC-TGTACCAAAG 352
|| | ||| || ||||||||| ||| | |||||| ||| ||| ||||| | ||||||||
Sbjct 304 CAAATCGATGTATGTAACGCCTATCATTCCGACGGTTTACTTG-TATGCAT-TACCAAAG 361
Query 353 ACAGGAG-ATTGGTTGTTTGGAATCCATGTTCAGGGGAAACCAAGTGGATCCAACCCAGA 411
||| || || |||||||||||||| |||| |||| |||||| |||||||||| |||||
Sbjct 362 ACAATAGCCTT-GTTGTTTGGAATCCGTGTTTAGGGCAAACCAGGTGGATCCAAGCCAGA 420
Query 412 AATTCCTACAAGGAATCA-GACTTA-TATGCCCTAGGTTACGATAACAGATCCTCCTCCT 469
|| |||||| || | ||| || ||||| || ||||||||| ||| |||||||| |
Sbjct 421 AACAGCTACAA-TAAAAATGAC-TACTATGCTCTCGGTTACGATGACAAATCCTCCTGTT 478
Query 470 ACAAAATCTTGAGGATGCATCCCGTTG--G-T-A-A-C-CCATTTCACATTGAGTCCGAA 522
||||||| ||||||||||||| |||| | | | | | || | | | ||||||||||
Sbjct 479 ACAAAATATTGAGGATGCATCGAGTTGTCGATGATATCACC-GTGGAAACTGAGTCCGAA 537
Query 523 GTCTATGACTTTGCTTCTCATTCGTGGAGA-AGTGTTGGTGT-GACTACCGACTTCCACA 580
|||||||||||||||||| |||||||||| | | ||||| | ||||||||| | |
Sbjct 538 GTCTATGACTTTGCTTCTAATTCGTGGAGGGA-TATTGGT-TCGACTACCGAGTGGTTTA 595
Query 581 TACAAACGA-ATGAG-AGTTATGGCATGAATGTCAAGGGAACTACTTACTGGTTTGC-TC 637
||||| | | || || ||| ||||||| ||||||||||||||||||||||| |||| |
Sbjct 596 TACAA-CAACAT-AGGAGTCGTGGCATGTATGTCAAGGGAACTACTTACTGGCTTGCGT- 652
Query 638 T--T-AGTAAAGACTGGTGGTCATCTGACGATCGTCGTTTCTTACTAAGTTTTGATTTTT 694
| | ||| |||| | | ||| ||| || | || ||||||||||||||||||||
Sbjct 653 TGATGAGTGAAGA--GCCGC-CATTTGA---TCAT--TT-CTTACTAAGTTTTGATTTTT 703
Query 695 CAAGAGAGAGATTTCAATGTCTGCCTCTTCCGGCGGATGTTAAAAATCTA-CATCTT--A 751
||| ||||||||||||| ||||| ||||||| |||| |||| ||| | | |||| |
Sbjct 704 CAACAGAGAGATTTCAAAGTCTGTCTCTTCCATTGGATATTAATCATCAAAC-TCTTTTA 762
Query 752 C-TGTGGTTTTATCGGTGACTAGAGAAGAGCAACAACTATGTATGTTTGCTACTCT-TGG 809
|| ||||||||| ||||||| |||||||||| |||| |||||||| ||||| || |||
Sbjct 763 GGTGCGGTTTTATCAGTGACTAAAGAAGAGCAAAAACTTTGTATGTTAGCTAC-CTATGG 821
Query 810 CGCTGGT-A-ATGTATACAAATTAGATGTATTCG-TAGCAACTAAGACAGAGGAGACTAC 866
| ||| | | | | || ||||| |||||||| | |||||||||||| ||| || |||
Sbjct 822 CTCTGATGAGA-G-ATTCAAATCAGATGTATG-GATAGCAACTAAGATGGAG-AG--TAC 875
Query 867 GGGAGA-ACTGACATGGACCAA-GT-TCCGTCG 896
|||| | || |||||| ||| || || ||||
Sbjct 876 CGGAGCCA-TGTCATGGAGCAATGTCTCGGTCG 907
> Ahg318995 jgi|Araly1|318995|fgenesh1_pm.C_scaffold_3002011
Length=1152
Score = 65.8 bits (35), Expect = 7e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1065 TTATGTTCCAAGTTTGGTTCAAATCCAGCAAGGTA 1099
|||||||||||||||||||||||||||||||||||
Sbjct 1101 TTATGTTCCAAGTTTGGTTCAAATCCAGCAAGGTA 1135
> Ahg930816 jgi|Araly1|930816|scaffold_303273.1
Length=847
Score = 60.2 bits (32), Expect = 3e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1065 TTATGTTCCAAGTTTGGTTCAAATCCAGCAAGGTA 1099
||||||||||||||||||||||||||||||| |||
Sbjct 772 TTATGTTCCAAGTTTGGTTCAAATCCAGCAATGTA 806
> Ahg479334 jgi|Araly1|479334|fgenesh2_kg.3__2035__AT2G07130.1
Length=1546
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1066 TATGTTCCAAGTTTGGTTCAAATCCAGCAAG 1096
|||||||||||||||||||||||||||||||
Sbjct 1458 TATGTTCCAAGTTTGGTTCAAATCCAGCAAG 1488
> Ahg929149 jgi|Araly1|929149|scaffold_301606.1
Length=1237
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 315 CTTTCACTGCGACGGCTTATTGCTATGC 342
||||||||||||||||||||||||||||
Sbjct 335 CTTTCACTGCGACGGCTTATTGCTATGC 362
> Ahg895515 jgi|Araly1|895515|Al_scaffold_0006_3511
Length=708
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1065 TTATGTTCCAAGTTTGGTTCAAATCCAG 1092
||||||||||||||||||||||||||||
Sbjct 678 TTATGTTCCAAGTTTGGTTCAAATCCAG 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5