BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21130.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905131 jgi|Araly1|905131|Al_scaffold_0003_2259 584 4e-166
Ahg323223 jgi|Araly1|323223|fgenesh1_pm.C_scaffold_5000767 322 4e-87
Ahg930597 jgi|Araly1|930597|scaffold_303054.1 198 6e-50
Ahg930066 jgi|Araly1|930066|scaffold_302523.1 178 8e-44
Ahg930067 jgi|Araly1|930067|scaffold_302524.1 89.8 4e-17
Ahg930713 jgi|Araly1|930713|scaffold_303170.1 87.9 1e-16
Ahg930068 jgi|Araly1|930068|scaffold_302525.1 71.3 1e-11
Ahg479634 jgi|Araly1|479634|fgenesh2_kg.3__2335__AT3G21170.1 60.2 3e-08
> Ahg905131 jgi|Araly1|905131|Al_scaffold_0003_2259
Length=1794
Score = 584 bits (316), Expect = 4e-166
Identities = 627/771 (81%), Gaps = 46/771 (6%)
Strand=Plus/Plus
Query 34 GAGGATTTGATAGTGGAGATACTCTCTAGAGTTTCGGCTGTATCTTTGGCACGATTACGA 93
||||||||| ||||||| ||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 1048 GAGGATTTGGTAGTGGAAATACTCTCTAGGGTTCCGGCTGTATCTTTGGCAAGATTACGA 1107
Query 94 ACTACATCCAAACG-ATGGAACGCTCTTG-TTAAGGACGAGAGACTTGCTAAGAAGCACT 151
| |||||| || | |||||| |||| || | || | | |||||||||||||||||| |
Sbjct 1108 TCAACATCC-AAGGAATGGAATGCTC-TGATCAAATATGGGAGACTTGCTAAGAAGCATT 1165
Query 152 CTGCTTATGCTCCAAGGCAG---TCTCTGGTTATCACGTTGATTGATTCCAGGGTTTATT 208
|||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||
Sbjct 1166 CTGCTTATGCTCCAAGGCAGTCTTCTCTGGTTATCATGTTGATTAATTTTAGGGTTTATA 1225
Query 209 TAATGAACGTGAGTCTCCA---ATATGGA-ATTGAA-AAGGTTGATCTATCTGCAAAGCT 263
|| ||| | | | |||||| | || | | | || |||| || || ||||||||||||
Sbjct 1226 TAGTGAGCATCAATCTCCACGGA-ATCAACAAT-AACAAGGATGTTCCATCTGCAAAGCT 1283
Query 264 AACAGGTCAATTCAGCCTAAAAGATCCTCTTT-CAAATTCTTTAGAGGAAGTTGATATAC 322
|||||||||||| ||||||||||||||||||| |||| |||| ||| ||||||| ||||
Sbjct 1284 AACAGGTCAATTTAGCCTAAAAGATCCTCTTTCCAAA-TCTTCAGAAGAAGTTGGTATAT 1342
Query 323 GTAACGTCTTTCACTGCGACGGCTTATTACTATGCAGCACCAAAGACAATAGATTAGTTG 382
||| ||||||||||||| ||||||| || ||||||| |||||| | ||||| | | ||||
Sbjct 1343 GTAGCGTCTTTCACTGCAACGGCTTGTTGCTATGCACCACCAAGGCCAATATACTGGTTG 1402
Query 383 TTTGGAATCCATGTTCAGGTGAAACAAGGTGGATCCAACCTAGA--AGTT-CCTACAAGG 439
||| |||||||||||||||||||| || |||||||||||| ||| | || | |||||||
Sbjct 1403 TTTTGAATCCATGTTCAGGTGAAAAAATGTGGATCCAACCCAGAGTAATTACTTACAAGG 1462
Query 440 TA-TCAGA-CATCTATGCTTTAGGTTATGATAACACATCCTCATGTCACAAAATCTTGAG 497
| ||| | || ||||||| ||||||| ||||||| |||||| ||| |||||||||||||
Sbjct 1463 AATTCA-ACCA-CTATGCTCTAGGTTACGATAACAGATCCTCCTGTTACAAAATCTTGAG 1520
Query 498 -GATGGATCGATCTGAG-GACCGTATCCCAATTCAAACTGAGTACCAAGTCTATGACTTT 555
| |||||||||||| | | ||| ||||| |||||||||||||||||||||||||||||
Sbjct 1521 CG-TGGATCGATCTG-GCTATCGTTTCCCATTTCAAACTGAGTACCAAGTCTATGACTTT 1578
Query 556 ACCTCTAAATCGTGGCTAGTTGATGGTGTGGCTGGAGGCTTGTTCATACCAAGTATTGGG 615
|||||||||||||||| |||| ||||| | ||||||||||| |||||||| ||||| |
Sbjct 1579 ACCTCTAAATCGTGGCGGGTTGTTGGTGAGACTGGAGGCTTGCTCATACCACGTATTCAG 1638
Query 616 ACTCGGAGACGTGGCTTGTCTGTGAAGGGAAATACTTACTGGCTTGCTCTTACTGAAGAC 675
| || | |||| | |||||||||||||||||||||||||||||| || || | |
Sbjct 1639 A---GG---CTTGGCATATCTGTGAAGGGAAATACTTACTGGCTTGCTAATAATGGACAA 1692
Query 676 GGACCGCCATTTGATATGTTCTTATTATGTTTTGATTTTTCGACTGAC-GGATTTCGACG 734
|||| | | | ||| |||| ||||| ||||||||| || || || || | | |
Sbjct 1693 GGAC-G---TGT--TAT---CTTACAATGTTATGATTTTTCTACAGAGAGG-TTCCAAAG 1742
Query 735 TCTGTCTCTTCCGACGGATACTCCTTG-TACTTATTATGATGTGTCTTTAT 784
|||||||||||| | |||| ||||| | | | ||| ||||||| ||||||
Sbjct 1743 TCTGTCTCTTCCCAAGGATGCTCCTAGATGGT-ATTCTGATGTGGCTTTAT 1792
Score = 555 bits (300), Expect = 3e-157
Identities = 706/894 (79%), Gaps = 60/894 (7%)
Strand=Plus/Plus
Query 26 ATCTTTCGGAGGATTTGATAGTGGAGATACTCTCTAGAGTTTCGGCTGTATC-T-T-TGG 82
||||| ||||||||||| ||||||||||||||||||| ||| | ||||||| | | |||
Sbjct 5 ATCTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGGGTTCCTACTGTATCTTCTCTGG 64
Query 83 CACGATTACGAACTACATCCAAACGATGGAACGCTCTTGTTAAGGACGAGAGACTTGCTA 142
||||||| ||| | ||||||||| |||||||| |||| || || || | |||||||||||
Sbjct 65 CACGATTGCGATCGACATCCAAAAGATGGAACACTCTGGTCAAAGATGGGAGACTTGCTA 124
Query 143 AGAAGCACTCTGCTTATGCTCCAAGGCAG--T-CTCTGGTTATCACGTTGATTGATTCCA 199
|||||||||||||||| |||||||||||| | |||||||||||| ||||||| ||| |
Sbjct 125 AGAAGCACTCTGCTTACGCTCCAAGGCAGTCTCCTCTGGTTATCATGTTGATTAATTTTA 184
Query 200 GGGTTTATTTAATGAACGTGAGTC-TCCAATATGGAATTGAA-AAGGTTGATCTATCTGC 257
||||||| || | | ||||| | | |||| | || | || || ||| | ||||||
Sbjct 185 GGGTTTA-TT--T--A-GTGAG-CAT-CAATCT-CAA-T-AACAACGTTCCCCCATCTGC 233
Query 258 AAAGCTAACAGGTCAATTCAGCCTAAAAGATCCTCTTTCAAATTCTTT--AGAGGAAGTT 315
|||| ||||| ||||||||||| |||||||||||||||| ||| ||| | | ||| |
Sbjct 234 AAAGGTAACATGTCAATTCAGCTTAAAAGATCCTCTTTC-TATTTTTTCCA-AAGAAATC 291
Query 316 GATATACGTAACGTCTTTCAC-TGCGACGGCTTATTACTATGCAGCACCAAAGACAATAG 374
|||||||||| | ||||||| || ||||||||||| ||||||| ||||||||||||||
Sbjct 292 GATATACGTAGCACCTTTCACTTG-GACGGCTTATTGCTATGCAATACCAAAGACAATAG 350
Query 375 ATTAGTTGTTTGGAATCCATGTTCAGGTGAAACAAGGTGGATCCAACCTAGA-AGTTCCT 433
||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 351 ATTGGTTGTTTGGAATCCATGTTCAGGTGAAACAAGGTGGATCCAACCTAGATA-TTCCT 409
Query 434 ACAAGGTAT-CAGACATCT-ATGCTTTAGGTTATGATAACACATCCTCATGTCACAAAAT 491
|||||| || | ||| | | ||||| | ||||| ||||||| |||||| ||| |||||||
Sbjct 410 ACAAGG-ATTCCGAC-TGTTATGCTCTCGGTTACGATAACAAATCCTCCTGTTACAAAAT 467
Query 492 CTTGAGGATGGATCGATCTGAGGACCGTATCCCAATT-CAAACTGAGTACC-AAGTCTAT 549
|||||||||| |||||| | | ||| | | || || | ||||| || ||||||||
Sbjct 468 CTTGAGGATGCATCGATTTTTTGTTGGTAACATA-TTGCACATTGAGT-CCGAAGTCTAT 525
Query 550 GACTTTACCTCTAAATCGTGGCTAGTTGATGGTGTGGCTGG-AGGCTTGTTCATACCA-A 607
|||||| | ||| | |||||| || || ||||| | || || || ||||||| || |
Sbjct 526 GACTTTGCTTCTCATTCGTGGAGAGGTGTTGGTGAGTCTACCAG-CTGGTTCATAACACA 584
Query 608 GTATTGGGACTCGGAGACGTGGCTTGTCTGTGAAGGGAAATACTTACTGGCTTGCTCTTA 667
| ||| | ||| |||||| ||| |||||||||||||||||||||||||||| |
Sbjct 585 G-ATTAGTTGTCGT---CGTGGCGTGTGTGTGAAGGGAAATACTTACTGGCTTGCTGGTG 640
Query 668 CTGAAGACG-GACCGCCATTTGAT-ATGTTCTTATTATGTTTTGATTTTTCGACTGACG- 724
| || ||| | |||| | |||| || |||||| || |||| |||||||| | ||| |
Sbjct 641 GTCAATACGAG-CCGCGAAATGATCAT-TTCTTACTACGTTTCGATTTTTCAAGTGA-GA 697
Query 725 GATTTCGACGTCTGTCTCTTCC-GACGGATACTCCTTGT-ACTTATTATGATGTGTCTTT 782
|||| | | ||||||||| || | ||||| ||| | || | |||| | || || ||||
Sbjct 698 GATTCCAATTTCTGTCTCTCCCAG-CGGATGCTCGTCGTGA-TTATGGTAATATGGCTTT 755
Query 783 ATCAGTGACTAGAGAAGAGCAACAACTTTGTATGTT---TAAG-A-GTCATG-GCTCTGA 836
||||||||||| |||| | |||||||||||| || | || | || || | | | |
Sbjct 756 ATCAGTGACTAAAGAAAATCAACAACTTTGTTTGCTAGCTACCCAAGT-ATTAGATATAA 814
Query 837 GT-TATGGATAGCAACTAAGATGGAGAGTACCGGAGCCATTTCATGGAGCAAGT 889
| ||||||| ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 815 ATGTATGGATGGCAACTAAGATTGAGAGTACCGGAGCCATTTTGTGGAGCAAGT 868
> Ahg323223 jgi|Araly1|323223|fgenesh1_pm.C_scaffold_5000767
Length=1083
Score = 322 bits (174), Expect = 4e-87
Identities = 701/938 (75%), Gaps = 106/938 (11%)
Strand=Plus/Plus
Query 8 AGAAGAGAAACACAGTTTATCTTTCGGAGGATTTGATAGTGGAGATACTCTCTAGAGTTT 67
||| ||||| || | | |||||| |||| |||||| |||| ||||| || |||||||||
Sbjct 14 AGAGGAGAAGCATAATATATCTTCCGGAAGATTTGCTAGTCGAGATTCTTTCTAGAGTTC 73
Query 68 CGGCTG-TATCTTTGGCACGATTACGAACTACATCCAAACGATGGAACGCTCTTGTTAAG 126
|||| | |||| | | |||||||||| | ||||| ||| |||||||||||||||| ||
Sbjct 74 CGGC-GAAATCTCTAGTACGATTACGATCAACATCGAAAAGATGGAACGCTCTTGTAAAA 132
Query 127 GACGAGAGACTTGCTAAGAAGCACTCTGCTTATGCTCCAAGGCA---GTCTCTGGTTATC 183
|| | |||| ||||||||||||||| |||| || |||||| ||| ||||| ||| ||
Sbjct 133 GATGGGAGATTTGCTAAGAAGCACTATGCTAATACTCCAAAGCACTCCTCTCTAGTTCTC 192
Query 184 ACGTTGATTGATTCCAGGGTTTATTTAATGAACG-TGAGTCTCCAATATGGAATTGAAAA 242
| | | | | ||| |||||||| ||| ||| || ||| | | || | || | |||
Sbjct 193 ATGGTAACTAATTTTAGGGTTTACTTAGTGAGCGTTGA-T-T---ATCT-CCATGGTAAA 246
Query 243 GGTTGATCT--ATCTGCAAAGCTAACAGGTCAATTCAGCCTAAAAGATCCTCTTTC-AAA 299
||| | || ||||||||| ||||| ||||||||| | || |||||| |||||| |||
Sbjct 247 -GTT-A-CTGCCTCTGCAAAGATAACAAGTCAATTCAACTTACAAGATCATCTTTCGAAA 303
Query 300 TTCTTTAGAGGAAGTTGATATACGTAACGTCTTTCACTGCGACGGCTTA-TTACTATGCA 358
| | || | ||| || |||||| || ||| | |||||| ||| || ||||||
Sbjct 304 --C-----A--AA-TCGATGTATGTAACGCCTATCATTCCGACGGTTTACTT-GTATGCA 352
Query 359 GCACCAAAGACAATAG-ATTAGTTGTTTGGAATCCATGTTCAGGTG-AAACAAGGTGGAT 416
|||||||||||||| || |||||||||||||| |||| ||| | |||| ||||||||
Sbjct 353 TTACCAAAGACAATAGCCTT-GTTGTTTGGAATCCGTGTTTAGG-GCAAACCAGGTGGAT 410
Query 417 CCAA-CCTAGAAGTTCCTACAAGGT-ATCA-GACAT-CTATGCTTTAGGTTATGATAACA 472
|||| || |||| |||||| | | | ||| | ||||||| | ||||| ||| |||
Sbjct 411 CCAAGCC-AGAAACAGCTACAA--TAAAAATGAC-TACTATGCTCTCGGTTACGATGACA 466
Query 473 CATCCTCATGTCACAAAATCTTGAGGATGGATCGA-TCTGAGGACCG-TATC-CCAATTC 529
|||||| ||| ||||||| ||||||||| ||||| | || || | |||| || |
Sbjct 467 AATCCTCCTGTTACAAAATATTGAGGATGCATCGAGT-TGTCGA-TGATATCACC-GTGG 523
Query 530 AAACTGAGTACC-AAGTCTATGACTTTACCTCTAAATCGTGGCTAGTTGA-TGGTGT-GG 586
||||||||| || |||||||||||||| | ||||| |||||| | | | |||| | |
Sbjct 524 AAACTGAGT-CCGAAGTCTATGACTTTGCTTCTAATTCGTGGAGGGAT-ATTGGT-TCGA 580
Query 587 CT--GGAGGCTTGTTCATACCAAGTATTGGGAC-TCGGAGACGTGGCTTGTCTGTGAAGG 643
|| || | | ||| ||| ||| | || | |||| |||||| ||| ||| ||||
Sbjct 581 CTACCGA-G-TGGTTTATA-CAA-CA-----ACATAGGAGTCGTGGCATGTATGTCAAGG 631
Query 644 GAAATACTTACTGGCTTGCTCTT-ACTGA-AGACGGA-CCGCCATTTGAT-ATGTTCTTA 699
||| ||||||||||||||| || | ||| || || |||||||||||| || ||||||
Sbjct 632 GAACTACTTACTGGCTTGC-GTTGA-TGAGTGA-AGAGCCGCCATTTGATCAT-TTCTTA 687
Query 700 TTATGTTTTGATTTTTCGACTGACG-GATTTCGACGTCTGTCTCTTCCGA-CGG--A-TA 754
|| ||||||||||||| || || | |||||| | ||||||||||||| | || | ||
Sbjct 688 CTAAGTTTTGATTTTTCAACAGA-GAGATTTCAAAGTCTGTCTCTTCC-ATTGGATATTA 745
Query 755 CTCCTTGTACT-TATTATGATG-TGTCTTTATCAGTGACTAGAGAAGAGCAACAACTTTG 812
|| | ||| | ||| | || || |||||||||||||| |||||||||| |||||||
Sbjct 746 ATCATCAAACTCTTTTA-GGTGCGGT-TTTATCAGTGACTAAAGAAGAGCAAAAACTTTG 803
Query 813 TATGTT---TA---A-GAG-TC--AT--G-G-CTC---TGAG-T-TATGGATAGCAACTA 853
|||||| || | | | || || | | || | || | |||||||||||||||
Sbjct 804 TATGTTAGCTACCTATG-GCTCTGATGAGAGATTCAAATCAGATGTATGGATAGCAACTA 862
Query 854 AGATGGAGAGTACCGGAGCCATTTCATGGAGCAA-GTC 890
|||||||||||||||||||||| ||||||||||| |||
Sbjct 863 AGATGGAGAGTACCGGAGCCATGTCATGGAGCAATGTC 900
> Ahg930597 jgi|Araly1|930597|scaffold_303054.1
Length=907
Score = 198 bits (107), Expect = 6e-50
Identities = 367/487 (75%), Gaps = 39/487 (8%)
Strand=Plus/Plus
Query 344 GCTTATTACTATGCAGCACCAAAGACAATAGA-TTAGTTGTTTGGAATCC-ATGTTCAGG 401
||||||| ||||| | ||||| ||||||||| || |||||||| ||||| | |||| |
Sbjct 148 GCTTATTGCTATGTGGTACCAAGGACAATAGACTT-GTTGTTTGTAATCCGCT-TTCATG 205
Query 402 TGAAACAAGGTGGATCCAACCTAG-AAGTTCCTACAAG-GTATCAGACATCTATGCTTTA 459
|||||| |||||||||||||| | ||| ||||||| | |||| || || | |||| |
Sbjct 206 TGAAACCAGGTGGATCCAACCCGGAAAG-TCCTACACGACTATC-GAAATTTTTGCTCTC 263
Query 460 GGTTATGATAACACATCCTCATGTCACAAAATCTTGAGGATGGATCGA-TCTGAGGACCG 518
||||| |||||| |||||| ||| | | ||||||||| ||| ||||| || | || |
Sbjct 264 GGTTACAATAACAAATCCTCCTGTTATACAATCTTGAGAATGTATCGATTC-CACGA-TG 321
Query 519 TA-TCCCAATTC-A-A-ACTGAGTACCAAGTCTATGACTTTACCTCTAAATCGTGGCTAG 574
| | |||| || | | | | ||||| |||||||||| ||||||||||| |||||| |
Sbjct 322 -ATTTCCAA-TCTAGATA-TAAGTACGAAGTCTATGATTTTACCTCTAATTCGTGGAGGG 378
Query 575 TTGATGGTGTGGCTGGAGGCTTGTTCATACCA-AGTATTGGGACTCGGAGACGTGGCTTG 633
||| ||||||| || |||| | |||||||| || | | || | ||||||||| ||
Sbjct 379 TTGTTGGTGTGACTACCGGCTGGGTCATACCACAG-AGTCAGA-AC--AGACGTGGCATG 434
Query 634 TCTGTGAAGGGAAATACTTACTGGCTTGCTCTTACTGAAGACGGACCGCCATTTGATATG 693
||| |||||||||||||||||||||||| || | ||| | || | | | | ||
Sbjct 435 TCTATGAAGGGAAATACTTACTGGCTTG--CTGA-AGAACATGG---G-C--GT-A-AT- 482
Query 694 TTCTTATTATGTTTTGATTTTTCGACTGACG-GATTTCGACGTCTGTCTCTTCCGACGGA 752
|| ||| || ||||||||| | | ||| | ||| | | || ||||||||||| | ||
Sbjct 483 TTTTTACTAAGTTTTGATTACACAAGTGA-GACATTCCAATGTTTGTCTCTTCCGGCAGA 541
Query 753 TACTCCTTGTAC-TTATTATGATGTGTCTTTATCAGTGACTAGAGAAGAGCAACAACTTT 811
| || | | |||| || || || |||||||||||||||||||||||||||||||||
Sbjct 542 TGCTAAGACT-CTTTATCATTATTTGGCTTTATCAGTGACTAGAGAAGAGCAACAACTTT 600
Query 812 GTATGTT 818
|||||||
Sbjct 601 GTATGTT 607
> Ahg930066 jgi|Araly1|930066|scaffold_302523.1
Length=550
Score = 178 bits (96), Expect = 8e-44
Identities = 199/248 (80%), Gaps = 10/248 (4%)
Strand=Plus/Plus
Query 370 AATAGATTAGTTGTTTGGAATCCATGTTCAGGTGAAACAAGGTGGATCCAACCTAGAAGT 429
|||||| | || |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 288 AATAGAATGGTGGTTTGGAATCCATGTTCAGGTGAAACAAGGTGGATCCAACCTAGAAAT 347
Query 430 TCCTACAAGGTATCAGACATC-TATGCTTTAGGTTATGATAACACATCCTCATGTCACAA 488
|||||| || ||||||| || |||||| ||||||| ||||| | |||||| | | ||||
Sbjct 348 TCCTACGAGAAATCAGAC-TCCTATGCTCTAGGTTACGATAATAGATCCTCCTCTTACAA 406
Query 489 AATCTTGAGGATGGATCGATCTGA-GGACCGTATCCCAATTCAAACTGAGTACCAAGTCT 547
|||||||||||||||||| | || || ||| | |||||||||||||| || | |
Sbjct 407 AATCTTGAGGATGGATCGGTTTGCTGGTGA-TAT---ATTTCAAACTGAGTACGAAATAT 462
Query 548 ATGACTTTACCTCTAAATCGTGGCTAGTT-GATGGTGTGGCTGGAGGCTTGTTCATACCA 606
|||||| |||| ||| | ||||| ||| | ||||||| || || ||||||||||
Sbjct 463 TTGACTTCACCTTTAATTTGTGGCG-GTTTGTTGGTGTGACTACCCACTGGTTCATACCA 521
Query 607 AG-TATTG 613
| |||||
Sbjct 522 CGGTATTG 529
> Ahg930067 jgi|Araly1|930067|scaffold_302524.1
Length=430
Score = 89.8 bits (48), Expect = 4e-17
Identities = 102/125 (82%), Gaps = 15/125 (12%)
Strand=Plus/Plus
Query 985 TTACACATTGTGGGAGAGCATATATACAT-CATACAAGTGGATCAGCATAGTGCAGATTC 1043
|||||||||||||||||| ||| | || ||||||||| ||| ||||||| ||| ||
Sbjct 294 TTACACATTGTGGGAGAG--GATA-A-ATGCATACAAGT---TCATCATAGTGGAGAATC 346
Query 1044 TAAA-TGTCCA--T-ATCTC-CTTACTTATGTTCCAAGTTTGGTTCAAATCCAACAAAGT 1098
|||| || || | | ||| |||| ||||||||||||||||||||||||||||||| ||
Sbjct 347 TAAATTG-ACATTTCAACTCACTTA-TTATGTTCCAAGTTTGGTTCAAATCCAACAAGGT 404
Query 1099 ATCTA 1103
||||
Sbjct 405 GTCTA 409
> Ahg930713 jgi|Araly1|930713|scaffold_303170.1
Length=706
Score = 87.9 bits (47), Expect = 1e-16
Identities = 214/291 (74%), Gaps = 26/291 (9%)
Strand=Plus/Plus
Query 534 TGAGTACCAAGTCTATGACTTTACCTCTAAATCGTGGCTAGTTGATGGTGTGGCTGGAGG 593
||||| | || ||||||||||||||||||| || ||| |||| | | | || |||
Sbjct 56 TGAGTTCGAAATCTATGACTTTACCTCTAATTCTTGGAGGGTTGCTTTTCAGACTAGAGA 115
Query 594 CTTGTTCATACCAAGTATTGGGACTCGGAGACGTGGCTTGTCTGTGAAGGGAAATACTTA 653
|| ||||||| ||| | ||| ||| |||| | |||||||||| |||||||||||
Sbjct 116 CTGGTTCATA-CAA-CCGT-GGA---AGAGCCGTGTCATGTCTGTGAATGGAAATACTTA 169
Query 654 CTGGCTTGCTCTTACTGAAGACGGACCGCCATTTGATATGTTCTTATTATGTTTTGATTT 713
|||||||||| |||| || | || ||| | | || | |||| | ||| ||||||
Sbjct 170 CTGGCTTGCTAGTACT-AA-A--GA---CCA-TGGGGAT-TACTTACAAAGTTATGATTT 220
Query 714 TTCGACTGACG-GATTTCGACGTCTGTCTCTTCCGACGGAT-ACTCCTTGTACTTATTAT 771
|||||| || | |||| || | ||||||||||| || | | | | || ||||| |
Sbjct 221 TTCGACAGA-GAAATTTAGAAGGGTGTCTCTTCCG--GG-TGA-TGATCGTTCTTATCA- 274
Query 772 GATGTGTC--TTTATCAGTGACTAGAGAAGAGCAACAACTTTGTATGTTTA 820
| | | || ||||||||||||||||||||||||||||||||| || |||
Sbjct 275 GGT-TTTCAGCTTATCAGTGACTAGAGAAGAGCAACAACTTTGTTTGCTTA 324
> Ahg930068 jgi|Araly1|930068|scaffold_302525.1
Length=1259
Score = 71.3 bits (38), Expect = 1e-11
Identities = 49/54 (91%), Gaps = 2/54 (4%)
Strand=Plus/Plus
Query 1051 CCATATCTCCTTA-CTTATGTTCCAAGTTTGGTTCAAATCCAACAAAGTATCTA 1103
|||| |||| ||| | |||||||||||||||||||||||||||||| |||||||
Sbjct 1183 CCATTTCTCTTTAGC-TATGTTCCAAGTTTGGTTCAAATCCAACAAGGTATCTA 1235
> Ahg479634 jgi|Araly1|479634|fgenesh2_kg.3__2335__AT3G21170.1
Length=1185
Score = 60.2 bits (32), Expect = 3e-08
Identities = 36/38 (95%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1066 TATGTTCCAAGTTTGGTTCAAATCCAACAAAGTATCTA 1103
||||||||||||||||||||||||||||| |||||||
Sbjct 1147 TATGTTCCAAGTTTGGTTCAAATCCAACATGGTATCTA 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5