BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21140.1
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479631 jgi|Araly1|479631|fgenesh2_kg.3__2332__AT3G21140.1 2305 0.0
Ahg923642 jgi|Araly1|923642|scaffold_104923.1 946 0.0
> Ahg479631 jgi|Araly1|479631|fgenesh2_kg.3__2332__AT3G21140.1
Length=1487
Score = 2305 bits (1248), Expect = 0.0
Identities = 1411/1488 (95%), Gaps = 17/1488 (1%)
Strand=Plus/Plus
Query 6 TATGTGTGTGTTATACAAACCCTACTCTGGAAAAGTCCTAATTCCTAAAGC--TACTTTC 63
||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2 TATGTATGTGTTTTACAAACCCTACTCTGGAAAAGTCCTAATTCCTAAAGCATTACTTTC 61
Query 64 AACAAAGACGCCTGAAGCATCTGCCTATAGTGAAAGATCAGAAGACTCTTCAACCAAAAT 123
||||||| ||||||||||||||||| || |||||||||| ||||||||||| | ||||
Sbjct 62 AACAAAGTCGCCTGAAGCATCTGCC-ATTGTGAAAGATC---AGACTCTTCAAGCTAAAT 117
Query 124 CTTATTCTCATCCACCATGGAAGCTCTCTTCACTTCAACACACA-CACCCAATTTACAGA 182
||||||||| || | |||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 118 CTTATTCTCCTCAATCATGGAAGCTCTCTACACTTCAACACACATC-CCCAATTTACAGA 176
Query 183 CTAAGCCTCTCCTCAAATCTCCGCTGCCCACTTCTTCCCAGTCTTCGTGTTGGTTTTGTA 242
| |||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||
Sbjct 177 CAAAGCCTCTCCTCAAATCTTCGCTGCCCACTTCATCCCAGTCTTCCTGTTGGTTATGTA 236
Query 243 ATTCGCTACCCAAAACGCAATTCCCGAAGCTGAGACTCAGTAATGGATCAAGTCACGGGC 302
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 237 ATTCGCTACCCAAAAAGCAATTCCCGAAGCTGAGAATCAGTAATGGATCAAGTCACGGGC 296
Query 303 TTCGTATACAAGCTCTCTTACGTAACGAGACGCCAAGTGAAGGTGAAGATAATAATGGGT 362
||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||
Sbjct 297 TTCGTATACAAGCTCTCTTACATAACGAGACACCAAGTGAAGGCGAAGATAATAATGGGT 356
Query 363 TTGGtttttttCCTGGGGATATCTTCTCTTTATCACAGGAAAAGCTCGGGAGTAATAGCA 422
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TCGGTTTTTTTCCTGGGGATATCTTCTCTTTATCACAGGAAAAGCTCGGGAGTAATAGCA 416
Query 423 ATGGTGAAACTTCTCATAGTGTAATCGATGTGGAGGCATCTCTTGCACATCCTCAAGGTG 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 417 ATGGTGAAACTTCTCATAGTGTAATCGATGTGGAGGCATCTCTTGCACATCCTC-AGGGG 475
Query 483 -GTGGAGGAAATCGAGCTGGGCTTTTTAGAACTCCAATATCTGGTGGTGTTCAAAATGCT 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AGTGGAGGAAATCGAGCTGGGCTTTTTAGAACTCCAATATCTGGTGGTGTTCAAAATGCT 535
Query 542 ACATCAGCTCATGCTTTACCTCGGCCTGCTTTAGCTGTACGGAACTTGTTGGAACAGGCT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ACATCAGCTCATGCTTTACCTCGGCCTGCTTTAGCTGTACGGAACTTGTTGGAACAGGCT 595
Query 602 AGGTTTGCTCATCTGTGCACAGTGATGTCCAAAATGCACCACCGCAGGGAAGGGTACCCA 661
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 596 AGGTTTGCTCATCTATGCACAGTGATGTCCAAAATGCACCACCGCAGGGAAGGATACCCA 655
Query 662 TTTGGCTCATTGGTAGATTTTGCACCTGATCGGATGGGGCATCCAATATTTTTGTTTTCA 721
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 656 TTTGGCTCATTGGTAGATTTTGCACCTGATCGGATGGGACATCCAATATTTTTATTTTCA 715
Query 722 CCGCTGGCCATCCACACACGAAATCTCTTGAATGAACCTAGATGCAGCCTCGTTGTTCAG 781
||| |||||||||||||||||||||||||| |||||| |||||||| |||||||| |||
Sbjct 716 CCGTTGGCCATCCACACACGAAATCTCTTGGCTGAACCGAGATGCAGTCTCGTTGTCCAG 775
Query 782 ATACCCGGATGGAGTGGCTTATCGAATGCAAGAGTGACATTATTTGGTGATGTGTACCCA 841
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 776 ATACCTGGATGGAGTGGCTTATCTAATGCTAGAGTGACATTATTTGGTGATGTATACCCA 835
Query 842 TTGTCAGAGGATGAACAGGAGTGGGCCCATAAGCAATATATTGCAAAGCACCCGCACGGG 901
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 836 TTGTCAGAAGATGAACAGGAGTGGGCTCATAAGCAATATATTGCTAAGCACCCGCACGGG 895
Query 902 CCTTCAGAGCAATGGGGAAACTTTCATTATTTTAGAATGCAGAACATAAGTGATATATAT 961
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 896 CCTTCTGAGCAATGGGGAAACTTTCACTATTTTAGAATGCAGAACATAAGTGATATATAT 955
Query 962 TTCATTGGAGGCTTTGGCACGGTCGCTTGGGTTGATGTCAAAGAGTATGAAGGTTTACAA 1021
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 956 TTCATTGGAGGCTTTGGCACGGTCGCTTGGGTTGATGTCAAAGAGTATGAAGCTTTACAA 1015
Query 1022 CCAGATAAGATAGCTGTTGATGGTGGTGAGCGGAACCTCAAGGAACTAAATGCCATCTTC 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CCAGATAAGATAGCTGTTGATGGTGGTGAGCGGAACCTCAAGGAACTAAATGCCATCTTC 1075
Query 1082 TCGAAACCGCTGAGAGAGCTACTGTCTACTGAATCAGAGGTAGACGATGCTGCTCTCATT 1141
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1076 TCGAAACCGCTGAGAGAGCTACTGTCTACTGAATCAGAGGTAGACGATGCTGCTCTAATT 1135
Query 1142 TCAATAGATAGCAAAGGAATAGATGTACGGGTTCGTCAAGGTGCTCAGTTTAACATACAA 1201
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TCTATAGATAGCAAAGGAATAGATGTACGGGTTCGTCAAGGTGCTCAGTTTAACATACAA 1195
Query 1202 AGGCTAGCATTTGAGGAAGGTCATGGTGTTGAGACACTAGAAGAAGCTAAGTCTGCATTA 1261
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1196 AGGCTAGCATTTGAGGAAGGTCATGGTGTTGAGACACTAGAAGAAGCTAAATCTGCACTA 1255
Query 1262 TGGAAAGTGTTGGAGAAGGTCAAGCTGAATTTGCAGAAATGACAAGCCCCTTTTGCTACT 1321
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TGGAAAGTGATGGAGAAGGTCAAGCTGAATTTGCAGAAATGACAAGCCCCTTTTGCTACT 1315
Query 1322 TTATACGGGTCCTTTTAAAATAGTAGGACCAATAAAATGTTGTTTGGTTCCTCTTTTCTT 1381
||||||||||| |||||||||||||||||||||||||||| | || ||||||||||| |
Sbjct 1316 CTATACGGGTCCGTTTAAAATAGTAGGACCAATAAAATGTTATCTGATTCCTCTTTTCCT 1375
Query 1382 CTTCTTGACTAGCTGAAATTTTGTAGTTTCTTTCTTT-TATCT-T--TT-GACCTCCCTT 1436
||| |||||||||||||||||||||||||||| |||| | ||| | || | ||||| ||
Sbjct 1376 CTTTTTGACTAGCTGAAATTTTGTAGTTTCTTACTTTCT-TCTATGATTTGGCCTCCTTT 1434
Query 1437 TTGTAGAGTAT-CAAAATTGGAGGTTTAAAAAACGTCAATCTGGAAAT 1483
|||||||||| ||||||||| |||||||||||||||||| |||||||
Sbjct 1435 TTGTAGAGTAAACAAAATTGGGGGTTTAAAAAACGTCAATTTGGAAAT 1482
> Ahg923642 jgi|Araly1|923642|scaffold_104923.1
Length=1216
Score = 946 bits (512), Expect = 0.0
Identities = 914/1105 (83%), Gaps = 40/1105 (4%)
Strand=Plus/Plus
Query 223 GTCTTCGTGTTGGTTTTGTAATTCGCT-ACCCAAAACGCAATTCCCGAAGCTGAGACTCA 281
|||||| |||||| | || |||||| | | || || || || || || ||||| ||||
Sbjct 110 GTCTTCTTGTTGGCTCTGCAATTCG-TCAGCC-AAGCG-AA-TCGTTAAACTGAGGCTCA 165
Query 282 GTAATGGATC-AAGTCACGGG---CTTCGTATACAAGCTCTCTTACGTAACGA-GACGC- 335
| | ||||| || ||| ||| |||||| |||| ||||| || | ||||| || ||
Sbjct 166 GGGAGGGATCGAA-TCAAGGGCTTCTTCGTGTACATGCTCTGTTTCACAACGAGGAGGCA 224
Query 336 -CAAGTGAAGGTGAAGATAATAATGGGTTTGGtttttttCCTGGGGATATCTTCTCTTTA 394
|||||||| | |||||||| ||||| |||||||| || |||| |||||| ||||||||
Sbjct 225 TCAAGTGAAAGCGAAGATAAGAATGGATTTGGTTTGTTACCTGCGGATATTTTCTCTTTG 284
Query 395 TCACAGGAAAAGCTCGGGAGTAATAGCAA-TGGTG-AAA--CTTCTCATAGTGTAATCGA 450
|| ||||| ||| | || |||||| | || ||||| ||| | | ||| | |||||||
Sbjct 285 TCTCAGGAGAAGTTTGGAAGTAAT-GTAAGTGGTGAAAAGGATAGTGATAATATAATCGA 343
Query 451 TGTGGAGGCATCTCTTGCACATCCTCAAGGTGGTGGAGGAAATCGAGCTGGGCTTTTTAG 510
||||||| | ||||||| ||||| | ||||||||||| |||||||||||| |||||
Sbjct 344 TGTGGAGACTTCTCTTGTGGTTCCTC-A--TGGTGGAGGAACTCGAGCTGGGCTCTTTAG 400
Query 511 AACTCCAATATCTGGTGGTGTTCAAAATGCTACATCAGCTCATGCTTTACCTCGGCCTGC 570
|||||| || |||||||||||||||| || || || ||||||| ||||||||| || ||
Sbjct 401 AACTCCGATTTCTGGTGGTGTTCAAAGCGCAACCTCGGCTCATGGTTTACCTCGACCAGC 460
Query 571 TTTAGCTG-TACGGAACTTGTTGGAACAGGCTAGGTTTGCTCATCTGTGCACAGTGATGT 629
|||||||| || |||||||| |||| ||||| |||||||||||||| |||||||||||||
Sbjct 461 TTTAGCTGTTA-GGAACTTGATGGAGCAGGCCAGGTTTGCTCATCTATGCACAGTGATGT 519
Query 630 CCAAAATGCACCACCGCAGGGAAGGGTACCCATTTGGCTCATTGGTAGATTTTGCACCTG 689
| ||||||||||| || || ||||| || || |||||||| |||||||||||||||||||
Sbjct 520 CTAAAATGCACCATCGTAGAGAAGGCTATCCGTTTGGCTCTTTGGTAGATTTTGCACCTG 579
Query 690 ATCGGATGGGGCATCCAATATTTTTGTTTTCACCGCTGGCCATCCACACACGAAATCTCT 749
||| ||||||||| |||||||||| ||||||||| |||| || ||||| || ||| |||
Sbjct 580 ATCCGATGGGGCACCCAATATTTTCATTTTCACCGTTGGCTATTCACACGCGGAATATCT 639
Query 750 TGA-ATGAACCTAGATGCAGCCTCGTTGTTCAGATACCCGGATGGAGTGGCTTATCGAAT 808
| | |||||||||||||| ||| |||||||||||||||||||||||| |||||||||||
Sbjct 640 T-AGCTGAACCTAGATGCACCCTAGTTGTTCAGATACCCGGATGGAGTTGCTTATCGAAT 698
Query 809 GCAAGAGTGACATTATTTGGTGATGTGTACCCATTGTCAGAGGATGAACAGGAGTGGGCC 868
|||||||| |||||||| || ||||| ||||||||| |||| ||| | || || ||||||
Sbjct 699 GCAAGAGTAACATTATTCGGCGATGTCTACCCATTGCCAGAAGATCAGCAAGAATGGGCC 758
Query 869 CATAAGCA--ATATATTGCAAAGCA-CCCGCACGGGCCTTCAGAGCAATGGGGAAACTTT 925
|||||||| |||| ||| ||||| | | || || ||||| | |||||||||||||||
Sbjct 759 CATAAGCAGTATATGTTG--AAGCATCAC-CAAGGACCTTCCCAACAATGGGGAAACTTT 815
Query 926 CATTATTTTAGAATGCAGAACATAAGTGATATATATTTCATTGGAGGCTTTGGCACGGTC 985
|| ||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 816 CACTATTTTAGAATGCAGAACATATGTGATATATATTTCATTGGAGGTTTTGGCACTGTC 875
Query 986 GCTTGGGTTGATGTCAAAGAGTATGAAGG-T-TTACAACCAGATAAGATAGCTGTTGATG 1043
|| ||| | | ||||| ||||| | ||| | || || ||||||||||||||||||||||
Sbjct 876 GCGTGGATCAACGTCAATGAGTACG-AGGCTCTT-CAGCCAGATAAGATAGCTGTTGATG 933
Query 1044 GTGGTGAGCGGAACCTCAAGGAACTAAATGCCATCTTCTCGAAA-CCGCTGAGAGAGCTA 1102
| ||||||| || || |||||||| |||||||||||||| ||| || || |||||| ||
Sbjct 934 GAGGTGAGCAAAATCTAAAGGAACTCAATGCCATCTTCTC-AAAGCCACTTAGAGAGTTA 992
Query 1103 CTGTCTACTGAATCAGAGGTAGACGATGCTGCTCTCATTTCAATAGATAGCAAAGGAATA 1162
|||||| |||| | ||||| |||||||||||| ||||||| |||||||||||||| |
Sbjct 993 TTGTCTAGTGAAGCCGAGGTCGACGATGCTGCTATCATTTCTATAGATAGCAAAGGGGTC 1052
Query 1163 GATGTACGGGTTCGTCAAGGTGCTCAGTTTAACATACAAAGGCTAGCATTTGAGGAAGGT 1222
||| || | |||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1053 GATATAAGAGTTCGTCAAGGTGCTCAGTTTAACATACAAAGGCTAGCCTTTGAGGAAAGT 1112
Query 1223 CATGGTGTTGAGACACTAGAAGAAGCTAAGTCTGCATTATGGAAAGTGTTGGAGAAGGTC 1282
||||||||||| || |||||||||| || |||||| | ||||||||| | ||||||| |
Sbjct 1113 CATGGTGTTGATACTTTAGAAGAAGCCAAATCTGCACTGTGGAAAGTGATAGAGAAGGGC 1172
Query 1283 AAGCTG-A-A-TTTGCAGAAATGAC 1304
||| || | | ||||||||||||||
Sbjct 1173 AAGTTGCACAATTTGCAGAAATGAC 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58316165095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5