BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21150.1
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342260 jgi|Araly1|342260|fgenesh1_pg.C_scaffold_3002023 961 0.0
> Ahg342260 jgi|Araly1|342260|fgenesh1_pg.C_scaffold_3002023
Length=1266
Score = 961 bits (520), Expect = 0.0
Identities = 642/700 (92%), Gaps = 11/700 (2%)
Strand=Plus/Plus
Query 138 GAGATCGACTCAATGGTGAGCTTTTGCGAGCTTTGTGGTGCCGAAGCTGATCTCCATTGT 197
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 568 GAGATCGACTCAATGGTGAGCTTCTGCGAGCTATGTGGTGCCGAAGCTGATCTCCACTGC 627
Query 198 GCCGCGGACTCTGCCTTCCTCTGCCGTTCTTGTGACGCTAAGTTCCATGCCTCAAATTTT 257
||||||||||| || |||||||||||||| || |||||||||||||||| |||||||||
Sbjct 628 GCCGCGGACTCAGCTTTCCTCTGCCGTTCATGCGACGCTAAGTTCCATGGCTCAAATTTC 687
Query 258 CTCTTCGCTCGTCATTTCCGGCGTGTCATCTGCCCAAATTGCAAATCTCTTACTCAAAAT 317
|||||||||||||||||||| || ||||||||||| |||||||||||||| |||||| ||
Sbjct 688 CTCTTCGCTCGTCATTTCCGTCGCGTCATCTGCCCTAATTGCAAATCTCTCACTCAAGAT 747
Query 318 TTCGTTTCTGGTCCTCTTCTTCCTTGGCCTCCACGAACAACATGTTGTTCAG-A--ATCG 374
||||||||||||||||||||||||||||||||||||||||| || ||||| | | ||||
Sbjct 748 TTCGTTTCTGGTCCTCTTCTTCCTTGGCCTCCACGAACAACCTGCTGTTCTGAATCATCG 807
Query 375 ---TCGTCTTCTTCTTGCTGCTCGTCTCTTGACTGTGTCTCAAGCTCCGAGCTATCGTCA 431
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 TCTTCGTCTTCGTCTTGCTGCTCGTCTCTTGACTGTGTCTCAAGCTCCGAGCTATCGTCG 867
Query 432 ACGACGCGTGACGTAAACAGAGCGCGAGGGAGGGAAAACAGAGTGAATGCCAAGGCCGTT 491
|||||| ||| |||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 868 ACGACGGGTGGCGTAAACAGAGCGCGAGGGAGGGAAAACAGAGTGAAGGCTAAGGCCGTT 927
Query 492 GCGGTTACGGTGGCGGATGGCATTTTTGTAAATTGGTGTGGTAAGTTAGGACTAAACAGG 551
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 928 GCGGTTACGGTGGCGGATGGCATTTTTGTAAATTGGTGTGGTAAATTAGGACTAAAGAGA 987
Query 552 GATTTAACAAACGCTGTCGTTTCATATGCGTCTTTGGCTTTGGCTGT---GGAGACGAGG 608
||||||||||||||||||||||| |||||||| | |||||| |||| |||||||| |
Sbjct 988 GATTTAACAAACGCTGTCGTTTCGTATGCGTCACTCGCTTTGTCTGTGGCGGAGACGAAG 1047
Query 609 CCAAGAGCGACGAAGAGAGTG-TTCTTAGCGGCGGCGTTTTGGTTCGGCGTTAAGAACAC 667
|| |||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||
Sbjct 1048 CCGAGAGCGACGAAGAGGGTGATT-TTAGCGGCAGCGTTTTGGTTCGGCGTTAAGAACAC 1106
Query 668 GACGACGTGGCAGAATTTAAAGAAAGTAGAAGATGTGACTGGAGTTTCAGCTGGGATGAT 727
|| || |||||||| ||||||||| || ||||||||||| |||||| |||||||||||||
Sbjct 1107 GATGAAGTGGCAGAGTTTAAAGAAGGTGGAAGATGTGACGGGAGTTGCAGCTGGGATGAT 1166
Query 728 TCGAGCGGTTGAAAGCAAATTGGCGCGTGCAATGACGCAGCAGCTTAGACGGTGGCGCGT 787
||||||||||||||||||| |||| |||| |||||||| |||||||||||||||||||||
Sbjct 1167 TCGAGCGGTTGAAAGCAAAATGGCCCGTGTAATGACGCTGCAGCTTAGACGGTGGCGCGT 1226
Query 788 GGATTCGGAGGAAGGATGGGCTGAAAACGACAACGTTTGA 827
||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 GGATTCGGAGGAAGGATGGGCTGAAAACGACAACGTTTGA 1266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33510044043
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5