BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21170.1 Length=1185 Score E Sequences producing significant alignments: (Bits) Value Ahg479634 jgi|Araly1|479634|fgenesh2_kg.3__2335__AT3G21170.1 1663 0.0 Ahg905131 jgi|Araly1|905131|Al_scaffold_0003_2259 316 2e-85 Ahg942825 jgi|Araly1|942825|scaffold_603369.1 167 2e-40 Ahg930712 jgi|Araly1|930712|scaffold_303169.1 143 3e-33 Ahg930715 jgi|Araly1|930715|scaffold_303172.1 97.1 3e-19 > Ahg479634 jgi|Araly1|479634|fgenesh2_kg.3__2335__AT3G21170.1 Length=1185 Score = 1663 bits (900), Expect = 0.0 Identities = 1096/1191 (92%), Gaps = 12/1191 (1%) Strand=Plus/Plus Query 1 ATGACGTTCAACGACCTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGAGTTCCGGCT 60 |||| ||||||| |||||||||||||| |||| || |||||||||||||| ||||| ||| Sbjct 1 ATGATGTTCAACTACCTTCCGGAGGATATGGTTGTAGAGATACTCTCTAGGGTTCCAGCT 60 Query 61 GTATTTCTAGCACGATTACGATCAACATCCAAACGATGGAACACTTTGATCAAAGATGGG 120 |||| ||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 61 GTATCTCTGGCACGGTTACGATCAACATCCAAAATATGGAACGCTTTGATCAAAGATGGG 120 Query 121 AAACTTTCTAAGAAGCACTCTTCTAATGCTCCAAGGCACTCTATGGCTCTCGTGTTGATT 180 | |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 121 AGACTTGCTAAGAAGCACTCTGCTAATGCTCCAAGGCACTCTATGGCTCTCGTGTTGATT 180 Query 181 GATCATAAGGTTTATTCAGTGAGATCCAATCTCCGTGGAATTCACAATAGCGTTGCTCCA 240 ||||||| |||||||| ||||||||||||||| |||| ||||||||||| |||||||||| Sbjct 181 GATCATAGGGTTTATTTAGTGAGATCCAATCTTCGTGAAATTCACAATAACGTTGCTCCA 240 Query 241 TATGTTAAC-ATAACATGTCATTTTAGCCTAAAAGAACATCTTTCTAATA-ATTATTCAA 298 | |||| | ||||||||||||||||||||||||||| ||||||||| | ||| ||||| Sbjct 241 TTTGTT-TCTGTAACATGTCATTTTAGCCTAAAAGAACGTCTTTCTAA-ACATTTTTCAA 298 Query 299 CAGAAGTCGATATA-GGCCACGTCTTTCACTGCGATGGCTTATTGCTATGCACCACCAAG 357 |||||||||| ||| || | ||||||||||||||||||||||||||||||||||||||| Sbjct 299 CAGAAGTCGACATACGG-GATGTCTTTCACTGCGATGGCTTATTGCTATGCACCACCAAG 357 Query 358 GACTATAGACTGGTGGTTTGGAATCCGCT-TTCAGGTGAAACAAGGTGGATTCAACCAAG 416 |||||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||| Sbjct 358 GACTATAGACTGGTAGTTTGGAATCC-ATGTTCAGGTGAAACCAGGTGGATTCAACCAAG 416 Query 417 ATTTTGCTACAAGAAAGATGACTGCTATGCTCTCGGTAGATCCTCTTGCAACAAGTACAA 476 | || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 AGATTCCTACAAGAAAGATGACTGCTATGCTCTCGGTAGATCCTCTTGCAACAAGTACAA 476 Query 477 AATCTTGAGGCAGGGTCGTCTTATCAATCCTAGCGAAGAA-CGTTACGTGTACAACATCG 535 |||||||||||||| | |||||||||||||||| ||||| | ||||||||||||||||| Sbjct 477 AATCTTGAGGCAGGAACTTCTTATCAATCCTAGCCAAGAATC-TTACGTGTACAACATCG 535 Query 536 TGGGGGAGGATCTTGTTATCAACAATAGCCAAGAACGTTACGAGTACGAAATCTATGACT 595 ||||||||||| || ||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 536 TGGGGGAGGATTTTCTTATCAATAATAACCAAGAACGTTACGAGTACGAAATCTATGACT 595 Query 596 TTAACTCTAATTCGTGGAGGAGTATTGGTGTGATCACCGGCTTGTTCAATCCAAATATCA 655 ||| |||||||||||||||| || ||||||||| ||||||| |||||||||||||||| | Sbjct 596 TTACCTCTAATTCGTGGAGGGGTGTTGGTGTGACCACCGGCCTGTTCAATCCAAATATTA 655 Query 656 CCAGTGGCGTGTCTGTAAATGGAATCACTTACTGGTTTGATATTAGTGAACAATTCTTAC 715 ||| |||| |||||||||| ||||||| ||||||||||||||||| ||||||||| |||| Sbjct 656 CCACTGGCATGTCTGTAAACGGAATCATTTACTGGTTTGATATTACTGAACAATTTTTAC 715 Query 716 TAAGTTTTGATTTCTCAACAGAGAGATTTGGAAGTGAGTCTCTCCCAGAGGGTGATAGTC 775 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 716 TAAGTTTTGATTTCTCAACAGAGAGATTTGGAAGTGAGTCTCTCCCAGAGGATGATAGTC 775 Query 776 ATTTGGCTTTATCAGTGACTAGACAAGGGAAACGACTTTGTATGTTATCTACTAATTACA 835 ||||||||||||| |||||| |||||||||||| ||||||||||||||||||| ||| | Sbjct 776 ATTTGGCTTTATCTGTGACTCGACAAGGGAAACAACTTTGTATGTTATCTACTCATTCCT 835 Query 836 CATACGTAACCGGAACAAACGTTAACTTATGGATAGCAACGAAGACTAGTGAGAACACCA 895 |||| || |||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 836 CATATGTGACCGAAACAAACGTTAACTTATGGATAGCAACGAAGAGTAGTGAGAACACC- 894 Query 896 GA-GCAATGTCATGGAGCAAGTTCCCAATACTGCGGGGCGGAGTTGGTCTACGCTATCGT 954 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 895 GAAGCAATGTCATGGAGCAAGTTCCCAATACTGCGGGGTGGAGTTGGTCTACGCTATCGT 954 Query 955 TGTCATTTTAGGGAAGGGGTGAGTTTCTTCGCATACCAAGTTAAGGAGAAGATTGTTGTA 1014 ||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 955 TGTCATTTTAGCGAAGGGGTGAGTTTCTTCGCATACCAGGTGAAGGAGAAGATTGTTGTA 1014 Query 1015 GTTTCTTGTCATAGACCCAACCGGCACTCCAAGGACATCATACACATTGTGGAAAATGAT 1074 || |||||||||||||||||||||||||||||| ||||||||||||||| || | ||| | Sbjct 1015 GTGTCTTGTCATAGACCCAACCGGCACTCCAAGAACATCATACACATTGCGGGACATGGT 1074 Query 1075 AAATTCATAGAATTGGATCATCATGGTGCAAAACCTACACATGAATTATCTCCTACCCCA 1134 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| Sbjct 1075 AAATTCATAGAATTGGATCATCATGGTGCAAAACCTACACACGAATTTTCTCCTACACCA 1134 Query 1135 CGTCTCCTCATATATGTTCCAAGTTTGGTTCAAATTCAACATGGTATTTAG 1185 | ||||||| ||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1135 CTTCTCCTCGTATATGTTCCAAGTTTGGTTCAAATCCAACATGGTATCTAG 1185 > Ahg905131 jgi|Araly1|905131|Al_scaffold_0003_2259 Length=1794 Score = 316 bits (171), Expect = 2e-85 Identities = 363/451 (80%), Gaps = 32/451 (7%) Strand=Plus/Plus Query 16 CTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGAGTTCCGGCTGTAT-TTCTA-G-CA 72 ||||||||||||||||||||||||||||||||||| ||||| |||||| |||| | || Sbjct 7 CTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGGGTTCCTACTGTATCTTCTCTGGCA 66 Query 73 CGATTACGATCAACATCCAAACGATGGAACACTTTGATCAAAGATGGGAAACTTTCTAAG 132 ||||| ||||| ||||||||| ||||||||||| || |||||||||||| |||| ||||| Sbjct 67 CGATTGCGATCGACATCCAAAAGATGGAACACTCTGGTCAAAGATGGGAGACTTGCTAAG 126 Query 133 AAGCACTCTTCTAATGCTCCAAGGCA--CTC-TATGGCTCTCGTGTTGATTGATCATAAG 189 ||||||||| || | ||||||||||| ||| | ||| | || |||||||| || || | Sbjct 127 AAGCACTCTGCTTACGCTCCAAGGCAGTCTCCTCTGGTTATCATGTTGATTAATTTTAGG 186 Query 190 GTTTATTCAGTGAG-ATCCAATCTCCGTGGAATTCACAATAGCGTTGCTCCATATGTTAA 248 ||||||| |||||| ||| |||||| ||| |||| |||| | |||| || || Sbjct 187 GTTTATTTAGTGAGCATC-AATCTC-----AATA-ACAA---CGTTCCCCCATCTGCAAA 236 Query 249 CATAACATGTCATTTTAGCCTAAAAGAACATCTTTCTAATAATTATTC-AACAGAAGTCG 307 |||||||||| || ||| ||||||| | |||||||| | || ||| || |||| ||| Sbjct 237 GGTAACATGTCAATTCAGCTTAAAAGATCCTCTTTCTATT--TT-TTCCAA-AGAAATCG 292 Query 308 ATATA-G--GCCACGTCTTTCACT-GCGATGGCTTATTGCTATGCACCACCAAGGACTAT 363 ||||| | || || |||||||| | || |||||||||||||||| ||||| ||| || Sbjct 293 ATATACGTAGC-AC--CTTTCACTTG-GACGGCTTATTGCTATGCAATACCAAAGACAAT 348 Query 364 AGACTGGTGGTTTGGAATCCGCT-TTCAGGTGAAACAAGGTGGATTCAACCAAGATTTTG 422 ||| |||| ||||||||||| | ||||||||||||||||||||| ||||| |||| || Sbjct 349 AGATTGGTTGTTTGGAATCCA-TGTTCAGGTGAAACAAGGTGGATCCAACCTAGATATTC 407 Query 423 CTACAAGAAAGATGACTGCTATGCTCTCGGT 453 ||||||| | ||||| |||||||||||| Sbjct 408 CTACAAGGATTCCGACTGTTATGCTCTCGGT 438 > Ahg942825 jgi|Araly1|942825|scaffold_603369.1 Length=1108 Score = 167 bits (90), Expect = 2e-40 Identities = 153/183 (84%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 16 CTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGAGTTCCGGCTGTAT-TTCTAGCACG 74 ||||| ||||||||||||||||||||||||||||| |||||||| | || || | | ||| Sbjct 46 CTTCCCGAGGATTTGGTAGTGGAGATACTCTCTAGGGTTCCGGCGGAATCTT-TGGTACG 104 Query 75 ATTACGATCAACATCCAAACGATGGAACACTT-TGATCAAAGATGGGAAACTTT-CTAAG 132 ||||||| | ||||||||| |||||||| || ||||||||||||||| | ||| ||||| Sbjct 105 ATTACGAACTACATCCAAAAGATGGAACG-TTCTGATCAAAGATGGGAGA-TTTGCTAAG 162 Query 133 AAGCACTCTTCTAATGCTCCAAGGCACTCTATGGCTCTCGTGTTGATTGATCATAAGGTT 192 || |||| | ||||||| |||||||||||| || | || ||||||||| | || |||| Sbjct 163 AAACACTATGCTAATGCACCAAGGCACTCTCTGATTATCATGTTGATTGCTTTTAGGGTT 222 Query 193 TAT 195 ||| Sbjct 223 TAT 225 Score = 67.6 bits (36), Expect = 2e-10 Identities = 43/46 (93%), Gaps = 2/46 (4%) Strand=Plus/Plus Query 580 TACGAAATCTATGACTTTAACTCTAATTCGTGGAGGAGT-ATTGGT 624 ||||||||||||||||||||||||||||| ||||| ||| |||||| Sbjct 487 TACGAAATCTATGACTTTAACTCTAATTCTTGGAG-AGTTATTGGT 531 > Ahg930712 jgi|Araly1|930712|scaffold_303169.1 Length=388 Score = 143 bits (77), Expect = 3e-33 Identities = 287/381 (75%), Gaps = 43/381 (11%) Strand=Plus/Plus Query 22 GAGGATTTGGTAGTGGAGATACTCTCTAGAG-TTCCGGCTGTATT-TCTAGCACGATTAC 79 ||||| || |||||| |||||||| |||| | || | || | || ||||||||||| || Sbjct 35 GAGGAATTAGTAGTGCAGATACTCACTAGGGCTT-CAGCAG-CTTCTCTAGCACGATCAC 92 Query 80 GATCAACATCCAAACGATGGAACACTTTGATCAAAGATGGGAAACTTT-CTAAGAAGCAC 138 || ||||||| ||||||| || |||||||||||| |||| ||| | ||||| || Sbjct 93 AATGTGTATCCAAAAGATGGAATGCTCTGATCAAAGATGAGAAA-TTTGCGAAGAA--AC 149 Query 139 TCTTCTAATGCTCCAAGG-CAC-T-CTA-TGGCT-CTCGTGTTGATTGATCATAAGGTTT 193 || | ||| | || | | | ||| | | | || |||||||||| || ||| || Sbjct 150 GGTT-T-TTGCAGC--GGTCCCATGCTACT-G-TAATCATGTTGATTGAAAAT-AGGGTT 202 Query 194 ATTC-AGTGAG-ATCCAATCTCCGTGGAATTCACAATAGCGT-TGCTCCATATGTTAACA 250 | || |||||| | |||||||| || ||||||||| | | || | | | | |||| Sbjct 203 AATCTAGTGAGCGT-CAATCTCCATGAAATTCACAACA--ATATGGT--A-AAGGTAAC- 255 Query 251 TAACATGTCATTTTAGCCTAAAAGAACATCTTTCTAATAATTATTCA-ACAGAAGTCGAT 309 || | ||| |||||||||||||||| ||||||| | || | |||| | |||||| ||| Sbjct 256 -AA-A--TCAGTTTAGCCTAAAAGAACCTCTTTCT-A-AA-TCTTCAGA-AGAAGTTGAT 307 Query 310 ATAGGCCACGTCTTTCACTGCGATGGCTTATTGCTATGCACCACCAA-G--GAC-TATAG 365 ||| | | ||||||||||||||||||||||||||||||||||||| | || ||||| Sbjct 308 ATATGTGATATCTTTCACTGCGATGGCTTATTGCTATGCACCACCAAAGATGATATATAG 367 Query 366 ACTGGTGGTTTGGAATCCGCT 386 |||||| |||||||||||||| Sbjct 368 ACTGGTTGTTTGGAATCCGCT 388 > Ahg930715 jgi|Araly1|930715|scaffold_303172.1 Length=1157 Score = 97.1 bits (52), Expect = 3e-19 Identities = 102/125 (82%), Gaps = 8/125 (6%) Strand=Plus/Plus Query 16 CTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGAGTTCCGGCTGTATTTCTA-G-CAC 73 ||||||||||||||||||||||||||||||||||| |||||| || | |||| | || Sbjct 64 CTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGGGTTCCGT-TG-ACTTCTTTGGCAA 121 Query 74 GATTACGATCAACATCCAAACGATGGAAC-ACTTTGATCAAAGATGGGAAACTTTCTAA- 131 ||||||||| ||| |||| |||||||| | | ||||||||||| || |||| | || Sbjct 122 GATTACGATGGGCATACAAAGGATGGAACGA-TCTGATCAAAGATAAGATACTTGC-AAT 179 Query 132 GAAGC 136 ||||| Sbjct 180 GAAGC 184 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44222583720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5