BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21170.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479634 jgi|Araly1|479634|fgenesh2_kg.3__2335__AT3G21170.1 1663 0.0
Ahg905131 jgi|Araly1|905131|Al_scaffold_0003_2259 316 2e-85
Ahg942825 jgi|Araly1|942825|scaffold_603369.1 167 2e-40
Ahg930712 jgi|Araly1|930712|scaffold_303169.1 143 3e-33
Ahg930715 jgi|Araly1|930715|scaffold_303172.1 97.1 3e-19
> Ahg479634 jgi|Araly1|479634|fgenesh2_kg.3__2335__AT3G21170.1
Length=1185
Score = 1663 bits (900), Expect = 0.0
Identities = 1096/1191 (92%), Gaps = 12/1191 (1%)
Strand=Plus/Plus
Query 1 ATGACGTTCAACGACCTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGAGTTCCGGCT 60
|||| ||||||| |||||||||||||| |||| || |||||||||||||| ||||| |||
Sbjct 1 ATGATGTTCAACTACCTTCCGGAGGATATGGTTGTAGAGATACTCTCTAGGGTTCCAGCT 60
Query 61 GTATTTCTAGCACGATTACGATCAACATCCAAACGATGGAACACTTTGATCAAAGATGGG 120
|||| ||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 61 GTATCTCTGGCACGGTTACGATCAACATCCAAAATATGGAACGCTTTGATCAAAGATGGG 120
Query 121 AAACTTTCTAAGAAGCACTCTTCTAATGCTCCAAGGCACTCTATGGCTCTCGTGTTGATT 180
| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGACTTGCTAAGAAGCACTCTGCTAATGCTCCAAGGCACTCTATGGCTCTCGTGTTGATT 180
Query 181 GATCATAAGGTTTATTCAGTGAGATCCAATCTCCGTGGAATTCACAATAGCGTTGCTCCA 240
||||||| |||||||| ||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct 181 GATCATAGGGTTTATTTAGTGAGATCCAATCTTCGTGAAATTCACAATAACGTTGCTCCA 240
Query 241 TATGTTAAC-ATAACATGTCATTTTAGCCTAAAAGAACATCTTTCTAATA-ATTATTCAA 298
| |||| | ||||||||||||||||||||||||||| ||||||||| | ||| |||||
Sbjct 241 TTTGTT-TCTGTAACATGTCATTTTAGCCTAAAAGAACGTCTTTCTAA-ACATTTTTCAA 298
Query 299 CAGAAGTCGATATA-GGCCACGTCTTTCACTGCGATGGCTTATTGCTATGCACCACCAAG 357
|||||||||| ||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 299 CAGAAGTCGACATACGG-GATGTCTTTCACTGCGATGGCTTATTGCTATGCACCACCAAG 357
Query 358 GACTATAGACTGGTGGTTTGGAATCCGCT-TTCAGGTGAAACAAGGTGGATTCAACCAAG 416
|||||||||||||| ||||||||||| | |||||||||||| |||||||||||||||||
Sbjct 358 GACTATAGACTGGTAGTTTGGAATCC-ATGTTCAGGTGAAACCAGGTGGATTCAACCAAG 416
Query 417 ATTTTGCTACAAGAAAGATGACTGCTATGCTCTCGGTAGATCCTCTTGCAACAAGTACAA 476
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGATTCCTACAAGAAAGATGACTGCTATGCTCTCGGTAGATCCTCTTGCAACAAGTACAA 476
Query 477 AATCTTGAGGCAGGGTCGTCTTATCAATCCTAGCGAAGAA-CGTTACGTGTACAACATCG 535
|||||||||||||| | |||||||||||||||| ||||| | |||||||||||||||||
Sbjct 477 AATCTTGAGGCAGGAACTTCTTATCAATCCTAGCCAAGAATC-TTACGTGTACAACATCG 535
Query 536 TGGGGGAGGATCTTGTTATCAACAATAGCCAAGAACGTTACGAGTACGAAATCTATGACT 595
||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 536 TGGGGGAGGATTTTCTTATCAATAATAACCAAGAACGTTACGAGTACGAAATCTATGACT 595
Query 596 TTAACTCTAATTCGTGGAGGAGTATTGGTGTGATCACCGGCTTGTTCAATCCAAATATCA 655
||| |||||||||||||||| || ||||||||| ||||||| |||||||||||||||| |
Sbjct 596 TTACCTCTAATTCGTGGAGGGGTGTTGGTGTGACCACCGGCCTGTTCAATCCAAATATTA 655
Query 656 CCAGTGGCGTGTCTGTAAATGGAATCACTTACTGGTTTGATATTAGTGAACAATTCTTAC 715
||| |||| |||||||||| ||||||| ||||||||||||||||| ||||||||| ||||
Sbjct 656 CCACTGGCATGTCTGTAAACGGAATCATTTACTGGTTTGATATTACTGAACAATTTTTAC 715
Query 716 TAAGTTTTGATTTCTCAACAGAGAGATTTGGAAGTGAGTCTCTCCCAGAGGGTGATAGTC 775
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 716 TAAGTTTTGATTTCTCAACAGAGAGATTTGGAAGTGAGTCTCTCCCAGAGGATGATAGTC 775
Query 776 ATTTGGCTTTATCAGTGACTAGACAAGGGAAACGACTTTGTATGTTATCTACTAATTACA 835
||||||||||||| |||||| |||||||||||| ||||||||||||||||||| ||| |
Sbjct 776 ATTTGGCTTTATCTGTGACTCGACAAGGGAAACAACTTTGTATGTTATCTACTCATTCCT 835
Query 836 CATACGTAACCGGAACAAACGTTAACTTATGGATAGCAACGAAGACTAGTGAGAACACCA 895
|||| || |||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 836 CATATGTGACCGAAACAAACGTTAACTTATGGATAGCAACGAAGAGTAGTGAGAACACC- 894
Query 896 GA-GCAATGTCATGGAGCAAGTTCCCAATACTGCGGGGCGGAGTTGGTCTACGCTATCGT 954
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 895 GAAGCAATGTCATGGAGCAAGTTCCCAATACTGCGGGGTGGAGTTGGTCTACGCTATCGT 954
Query 955 TGTCATTTTAGGGAAGGGGTGAGTTTCTTCGCATACCAAGTTAAGGAGAAGATTGTTGTA 1014
||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 955 TGTCATTTTAGCGAAGGGGTGAGTTTCTTCGCATACCAGGTGAAGGAGAAGATTGTTGTA 1014
Query 1015 GTTTCTTGTCATAGACCCAACCGGCACTCCAAGGACATCATACACATTGTGGAAAATGAT 1074
|| |||||||||||||||||||||||||||||| ||||||||||||||| || | ||| |
Sbjct 1015 GTGTCTTGTCATAGACCCAACCGGCACTCCAAGAACATCATACACATTGCGGGACATGGT 1074
Query 1075 AAATTCATAGAATTGGATCATCATGGTGCAAAACCTACACATGAATTATCTCCTACCCCA 1134
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 1075 AAATTCATAGAATTGGATCATCATGGTGCAAAACCTACACACGAATTTTCTCCTACACCA 1134
Query 1135 CGTCTCCTCATATATGTTCCAAGTTTGGTTCAAATTCAACATGGTATTTAG 1185
| ||||||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1135 CTTCTCCTCGTATATGTTCCAAGTTTGGTTCAAATCCAACATGGTATCTAG 1185
> Ahg905131 jgi|Araly1|905131|Al_scaffold_0003_2259
Length=1794
Score = 316 bits (171), Expect = 2e-85
Identities = 363/451 (80%), Gaps = 32/451 (7%)
Strand=Plus/Plus
Query 16 CTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGAGTTCCGGCTGTAT-TTCTA-G-CA 72
||||||||||||||||||||||||||||||||||| ||||| |||||| |||| | ||
Sbjct 7 CTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGGGTTCCTACTGTATCTTCTCTGGCA 66
Query 73 CGATTACGATCAACATCCAAACGATGGAACACTTTGATCAAAGATGGGAAACTTTCTAAG 132
||||| ||||| ||||||||| ||||||||||| || |||||||||||| |||| |||||
Sbjct 67 CGATTGCGATCGACATCCAAAAGATGGAACACTCTGGTCAAAGATGGGAGACTTGCTAAG 126
Query 133 AAGCACTCTTCTAATGCTCCAAGGCA--CTC-TATGGCTCTCGTGTTGATTGATCATAAG 189
||||||||| || | ||||||||||| ||| | ||| | || |||||||| || || |
Sbjct 127 AAGCACTCTGCTTACGCTCCAAGGCAGTCTCCTCTGGTTATCATGTTGATTAATTTTAGG 186
Query 190 GTTTATTCAGTGAG-ATCCAATCTCCGTGGAATTCACAATAGCGTTGCTCCATATGTTAA 248
||||||| |||||| ||| |||||| ||| |||| |||| | |||| || ||
Sbjct 187 GTTTATTTAGTGAGCATC-AATCTC-----AATA-ACAA---CGTTCCCCCATCTGCAAA 236
Query 249 CATAACATGTCATTTTAGCCTAAAAGAACATCTTTCTAATAATTATTC-AACAGAAGTCG 307
|||||||||| || ||| ||||||| | |||||||| | || ||| || |||| |||
Sbjct 237 GGTAACATGTCAATTCAGCTTAAAAGATCCTCTTTCTATT--TT-TTCCAA-AGAAATCG 292
Query 308 ATATA-G--GCCACGTCTTTCACT-GCGATGGCTTATTGCTATGCACCACCAAGGACTAT 363
||||| | || || |||||||| | || |||||||||||||||| ||||| ||| ||
Sbjct 293 ATATACGTAGC-AC--CTTTCACTTG-GACGGCTTATTGCTATGCAATACCAAAGACAAT 348
Query 364 AGACTGGTGGTTTGGAATCCGCT-TTCAGGTGAAACAAGGTGGATTCAACCAAGATTTTG 422
||| |||| ||||||||||| | ||||||||||||||||||||| ||||| |||| ||
Sbjct 349 AGATTGGTTGTTTGGAATCCA-TGTTCAGGTGAAACAAGGTGGATCCAACCTAGATATTC 407
Query 423 CTACAAGAAAGATGACTGCTATGCTCTCGGT 453
||||||| | ||||| ||||||||||||
Sbjct 408 CTACAAGGATTCCGACTGTTATGCTCTCGGT 438
> Ahg942825 jgi|Araly1|942825|scaffold_603369.1
Length=1108
Score = 167 bits (90), Expect = 2e-40
Identities = 153/183 (84%), Gaps = 6/183 (3%)
Strand=Plus/Plus
Query 16 CTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGAGTTCCGGCTGTAT-TTCTAGCACG 74
||||| ||||||||||||||||||||||||||||| |||||||| | || || | | |||
Sbjct 46 CTTCCCGAGGATTTGGTAGTGGAGATACTCTCTAGGGTTCCGGCGGAATCTT-TGGTACG 104
Query 75 ATTACGATCAACATCCAAACGATGGAACACTT-TGATCAAAGATGGGAAACTTT-CTAAG 132
||||||| | ||||||||| |||||||| || ||||||||||||||| | ||| |||||
Sbjct 105 ATTACGAACTACATCCAAAAGATGGAACG-TTCTGATCAAAGATGGGAGA-TTTGCTAAG 162
Query 133 AAGCACTCTTCTAATGCTCCAAGGCACTCTATGGCTCTCGTGTTGATTGATCATAAGGTT 192
|| |||| | ||||||| |||||||||||| || | || ||||||||| | || ||||
Sbjct 163 AAACACTATGCTAATGCACCAAGGCACTCTCTGATTATCATGTTGATTGCTTTTAGGGTT 222
Query 193 TAT 195
|||
Sbjct 223 TAT 225
Score = 67.6 bits (36), Expect = 2e-10
Identities = 43/46 (93%), Gaps = 2/46 (4%)
Strand=Plus/Plus
Query 580 TACGAAATCTATGACTTTAACTCTAATTCGTGGAGGAGT-ATTGGT 624
||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 487 TACGAAATCTATGACTTTAACTCTAATTCTTGGAG-AGTTATTGGT 531
> Ahg930712 jgi|Araly1|930712|scaffold_303169.1
Length=388
Score = 143 bits (77), Expect = 3e-33
Identities = 287/381 (75%), Gaps = 43/381 (11%)
Strand=Plus/Plus
Query 22 GAGGATTTGGTAGTGGAGATACTCTCTAGAG-TTCCGGCTGTATT-TCTAGCACGATTAC 79
||||| || |||||| |||||||| |||| | || | || | || ||||||||||| ||
Sbjct 35 GAGGAATTAGTAGTGCAGATACTCACTAGGGCTT-CAGCAG-CTTCTCTAGCACGATCAC 92
Query 80 GATCAACATCCAAACGATGGAACACTTTGATCAAAGATGGGAAACTTT-CTAAGAAGCAC 138
|| ||||||| ||||||| || |||||||||||| |||| ||| | ||||| ||
Sbjct 93 AATGTGTATCCAAAAGATGGAATGCTCTGATCAAAGATGAGAAA-TTTGCGAAGAA--AC 149
Query 139 TCTTCTAATGCTCCAAGG-CAC-T-CTA-TGGCT-CTCGTGTTGATTGATCATAAGGTTT 193
|| | ||| | || | | | ||| | | | || |||||||||| || ||| ||
Sbjct 150 GGTT-T-TTGCAGC--GGTCCCATGCTACT-G-TAATCATGTTGATTGAAAAT-AGGGTT 202
Query 194 ATTC-AGTGAG-ATCCAATCTCCGTGGAATTCACAATAGCGT-TGCTCCATATGTTAACA 250
| || |||||| | |||||||| || ||||||||| | | || | | | | ||||
Sbjct 203 AATCTAGTGAGCGT-CAATCTCCATGAAATTCACAACA--ATATGGT--A-AAGGTAAC- 255
Query 251 TAACATGTCATTTTAGCCTAAAAGAACATCTTTCTAATAATTATTCA-ACAGAAGTCGAT 309
|| | ||| |||||||||||||||| ||||||| | || | |||| | |||||| |||
Sbjct 256 -AA-A--TCAGTTTAGCCTAAAAGAACCTCTTTCT-A-AA-TCTTCAGA-AGAAGTTGAT 307
Query 310 ATAGGCCACGTCTTTCACTGCGATGGCTTATTGCTATGCACCACCAA-G--GAC-TATAG 365
||| | | ||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 308 ATATGTGATATCTTTCACTGCGATGGCTTATTGCTATGCACCACCAAAGATGATATATAG 367
Query 366 ACTGGTGGTTTGGAATCCGCT 386
|||||| ||||||||||||||
Sbjct 368 ACTGGTTGTTTGGAATCCGCT 388
> Ahg930715 jgi|Araly1|930715|scaffold_303172.1
Length=1157
Score = 97.1 bits (52), Expect = 3e-19
Identities = 102/125 (82%), Gaps = 8/125 (6%)
Strand=Plus/Plus
Query 16 CTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGAGTTCCGGCTGTATTTCTA-G-CAC 73
||||||||||||||||||||||||||||||||||| |||||| || | |||| | ||
Sbjct 64 CTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGGGTTCCGT-TG-ACTTCTTTGGCAA 121
Query 74 GATTACGATCAACATCCAAACGATGGAAC-ACTTTGATCAAAGATGGGAAACTTTCTAA- 131
||||||||| ||| |||| |||||||| | | ||||||||||| || |||| | ||
Sbjct 122 GATTACGATGGGCATACAAAGGATGGAACGA-TCTGATCAAAGATAAGATACTTGC-AAT 179
Query 132 GAAGC 136
|||||
Sbjct 180 GAAGC 184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5