BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21175.1
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479637 jgi|Araly1|479637|fgenesh2_kg.3__2338__AT3G21175.1 1816 0.0
> Ahg479637 jgi|Araly1|479637|fgenesh2_kg.3__2338__AT3G21175.1
Length=1304
Score = 1816 bits (983), Expect = 0.0
Identities = 1168/1257 (93%), Gaps = 14/1257 (1%)
Strand=Plus/Plus
Query 77 acctttttctctctttGTATAATCAAATCCTCTTTATCTTTCATTGTTTCGCGTGAATTA 136
||| |||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 48 ACCCTTTTGGCTCATTGTAGAATCAAATCCTCTTTATCTTTCACTGTTTCGCGTGAATTA 107
Query 137 GCTCTGCAAAGGCTCTTCATTCTTCTCGCTTGGATTCCTCTGCACAAAAGAAAAAAGACC 196
|||||| ||||| |||||||||||||| |||||||| ||||| ||||||||| |||||||
Sbjct 108 GCTCTGAAAAGGTTCTTCATTCTTCTCCCTTGGATTGCTCTGAACAAAAGAATAAAGACC 167
Query 197 ATGGATGATCTTCATGGAAGA-AATGGTCGAATGCACATTGGTGTAGCGCAAAATCCAAT 255
|||||||| |||||||||| | |||||||| ||||||||||| ||||||||| |||||||
Sbjct 168 ATGGATGAACTTCATGGAA-ACAATGGTCGTATGCACATTGGCGTAGCGCAAGATCCAAT 226
Query 256 GCATGTGCAGTATGAAGATCACGGTTTGCACCATATCGACAATGAAAACAGTATGATGGA 315
||||||||||||||| ||||||| ||||||||||||||||||| |||| ||||||||||
Sbjct 227 GCATGTGCAGTATGATCATCACGGCTTGCACCATATCGACAATGGAAACGGTATGATGGA 286
Query 316 TGACCATGCTGATGGTGGGATGGATGAAGGAGTGGAGACAGACATTCCTTCTCACCCTGG 375
||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 287 TGAACATACTGATGGTGGGATGGATGAAGGAGTGGAGACAGACATTCCTTCCCACCCTGG 346
Query 376 AAACTCAGCTGATAATCGTGGTGAAGTTGTAGACCGTGGAATTGAAAATGGAGATCAATT 435
|||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 347 AAACGCAGCTGATAATCGCGGTGAAGTTGTAGACCGTGGTATTGAAAATGGAGATCAATT 406
Query 436 GACATTGTCCTTCCAGGGACAAGTTTATGTTTTTGACCGTGTCTCGCCTGAGAAGGTTCA 495
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 GACATTGTCATTCCAGGGACAAGTTTATGTTTTTGACCGTGTCTCGCCTGAGAAGGTTCA 466
Query 496 AGCTGTGCTTTTGTTACTTGGTGGAAGGGAAGTACCACATACACTCCCAACAACCCTAGG 555
|||||| |||||||||||||||||| | ||||||||||| |||||||| ||| |||||||
Sbjct 467 AGCTGTCCTTTTGTTACTTGGTGGACGTGAAGTACCACAGACACTCCCGACATCCCTAGG 526
Query 556 ATCACCTCATCAGAACAATAGGGTACTGGGTCTATCTGGTACTCCTCAACGGCTTAGCGT 615
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 ATCACCTCATCAGATCAATAGGGTACTGGGTCTATCTGGTACTCCTCAACGGCTTAGCGT 586
Query 616 TCCGCAGCGGTTAGCTTCTTTGCTCAGGTTTAGGGAGAAACGAAAAGGGAGGAACTTTGA 675
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 587 CCCGCAGCGGTTAGCTTCTTTGCTCAGATTTAGGGAGAAACGAAAAGGGAGGAATTTTGA 646
Query 676 TAAGACTATTCGCTATACAGTCAGGAAAGAAGTAGCCTTGAGAATGCAGCGTAAGAAAGG 735
|||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 647 TAAGACAATTCGCTACACAGTCAGGAAAGAGGTAGCCTTGAGAATGCAACGTAAGAAAGG 706
Query 736 TCAGTTCACGTCGGCTAAATCAAGCAATGATGATTCTGGATCCACTGGATCGGATTGGGG 795
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 ACAGTTCACATCGGCTAAATCAAGCAATGATGATTCTGGATCCACTGGATCGGATTGGGG 766
Query 796 GTCAAACCAGAGCTGGGCCGTAGAAGGGACTGAGACTCAGAAGCCAGAGGTTTTATGTCG 855
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GTCAAACCAGAACTGGGCCATAGAAGGGACTGAGACTCAGAAGCCAGAGGTTTTATGTCG 826
Query 856 ACACTGTGGAACAAGTGAGAAGTCAACTCCAATGATGCGACGTGGACCTGATGGGCCAAG 915
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 ACACTGTGGAATAAGTGAGAAGTCAACTCCAATGATGCGACGTGGACCTGATGGGCCAAG 886
Query 916 AACACTTTGTAATGCGTGTGGACTGATGTGGGCAAACAAGGGGACTCTTAGAGACCTATC 975
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| | ||
Sbjct 887 AACACTTTGTAATGCATGTGGACTAATGTGGGCAAACAAGGGAACTCTTAGAGACTTGTC 946
Query 976 CAAAGTCCCTCCTCCGCAAACACCTCAGCATCTATCTCTGAATAAGAATGAGGA-CGCAA 1034
|||||||||||| || |||||||||||||||||| || |||||||||||||||| | |||
Sbjct 947 CAAAGTCCCTCCACCTCAAACACCTCAGCATCTACCTGTGAATAAGAATGAGGATC-CAA 1005
Query 1035 ATCTTGAGGCTGATCAAATGA-TGGAAGTAACTGGTGACATTAGCAACACACAGTGAGAA 1093
||||||||||||||||||||| |||| ||| ||| ||||||||||||| |||||||||||
Sbjct 1006 ATCTTGAGGCTGATCAAATGAATGGA-GTAGCTGATGACATTAGCAACTCACAGTGAGAA 1064
Query 1094 CTGAGAAACCATTGGAAGCAAGAAAGGATCTCAAACAAAAACAGTTGTTATCATTT-CAT 1152
||||||||||||| |||||||||| ||||||| || |||||||| ||||||| | |
Sbjct 1065 CTGAGAAACCATTC-AAGCAAGAAATTATCTCAA-CAGAAACAGTT---ATCATTTTCTT 1119
Query 1153 TTGATGATGGAATCGAATCTGAGTTGTGTTTAGGGTTTCTCTGGGTTAATCTCAGTCTAT 1212
|| ||||||||||||||||||||||| |||||||||||||||||||| |||| ||||| |
Sbjct 1120 TT-ATGATGGAATCGAATCTGAGTTGGGTTTAGGGTTTCTCTGGGTTCATCTGAGTCTTT 1178
Query 1213 GTGGGCACATTTTAGTCTTCTACAAATTATAAGACACTCTTCACTTATTTAGAAGCTCAC 1272
|||| ||| ||||| |||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1179 GTGGACACCTTTTAATCTTTTACAAATTATAAGATACTCTTCACTTATTTAGAAGCTCAC 1238
Query 1273 TCATCAGAAAAGaaaaaaaaaaCTTTGCTCAGTCTCTCATCTGTGTGTTTGATTATA 1329
|||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||
Sbjct 1239 TCATCAGAAAAGAAAAAAAAAACTTTCCTCAGTGTCTCATCTGTGT-TTTGATTATA 1294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52221725895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5