BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21190.1
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479639 jgi|Araly1|479639|fgenesh2_kg.3__2340__AT3G21190.1 2628 0.0
Ahg923651 jgi|Araly1|923651|scaffold_104932.1 1173 0.0
> Ahg479639 jgi|Araly1|479639|fgenesh2_kg.3__2340__AT3G21190.1
Length=1668
Score = 2628 bits (1423), Expect = 0.0
Identities = 1596/1678 (95%), Gaps = 17/1678 (1%)
Strand=Plus/Plus
Query 1 AGCTTGTCTCTATCTGCCCCAC--A-AACACCTCTCTTTGTTGGACTCTCTTTTTCTTTC 57
|||||||||||||||||||||| | |||||||||||||| ||||||||||||||| |||
Sbjct 1 AGCTTGTCTCTATCTGCCCCACAAACAACACCTCTCTTTGCTGGACTCTCTTTTTC-TTC 59
Query 58 TTCTTCCCTT-AGTCTATTTTAACTCAGAAACCTCTGtttttttttGTTAGAGAGAAAGG 116
||| |||| ||||||||||||||||||| | |||| |||| || ||||||| ||||
Sbjct 60 --CTTTCCTTGAGTCTATTTTAACTCAGAATCGTCTG--CTTTTCTG-TAGAGAG-AAGG 113
Query 117 TAAGAAATGGGTGTTGATTTGAGGCAAGTAGTTGCTGGTATTCTCACCATTACCATGTTT 176
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 114 TAAGAAATGGGTGTTGATTTGAGGCAAGTAGTGGCTGGTATTCTCACCATTACCATGTTT 173
Query 177 GTGATGCTTGGACAGATGCTTCATAGAGATTACTTTGATTCTCTTCAGGAGAAAGCTCAG 236
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GTTATGCTTGGACAGATGCTTCATAGAGATTACTTTGATTCTCTTCAGGAGAAAGCTCAG 233
Query 237 GGAGATGCACAAGATATTGAATTTGAAGGATCTAAAGTCTCTGTGAAAGATGGTCTTGTC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GGAGATGCACAAGATATTGAATTTGAAGGATCTAAAGTCTCTGTGAAAGATGGTCTTGTC 293
Query 297 GGAACCGTTGAAGGCAGTAAAGGACTTTGGATGGAAGATAACACTGATCTTACTCCTTGT 356
|||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct 294 GGAACCGTTGAAGGCAGTAAGGGACTTTGGATGGAGGATAACACTGATCTTAATCCTTGT 353
Query 357 TGGCCAACATTACTATCTGATGACGCTGTATCATCGAAAGGGTATGTTACATTCTCACTT 416
||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 354 TGGCCAACATTACTATCAGATGAAGCGGTATCATCGAAAGGGTATGTTACATTCTCACTA 413
Query 417 ACCAATGGTCCTGAGTACCATATCTCTCAGATCACTGATGCTGTAATGGTGGCTAAGCAT 476
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 414 ACCAATGGTCCTGAGTACCATATCTCTCAGATTTCTGATGCTGTAATGGTGGCAAAGCAT 473
Query 477 CTTGGAGCAACTCTAGTACTTCCTGATATAAGAGGAAGCAAACCTGGTGATGAAAGGAAT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 474 CTTGGAGCAACTCTAGTACTTCCTGATATAAGAGGAAGCAAACCTGGTGATGAAAGGGAT 533
Query 537 TTTGAAGATATCTATGATGCGGATAAGCTGATTAAAAGCTTGGAAAATGTCGTTAAAGTT 596
||||||||||||||||||| |||||| || ||||| |||||||||||||| |||||||||
Sbjct 534 TTTGAAGATATCTATGATGTGGATAAACTAATTAAGAGCTTGGAAAATGTTGTTAAAGTT 593
Query 597 GTGAAAAAATTGCCTGAAGAAGTTTCTCTAAGGAACATGGCCATTGTGAAGGTCCCTACC 656
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GTGAAACAATTGCCTGAAGAAGTTTCTCTAAGGAACATGGCCATTGTGAAGGTCCCTACC 653
Query 657 AGAGTTACAGAAGATTACATTAAAGAGCACATTGATCCCATCTTTAAATCTAAAGGAAAC 716
||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 654 AGAGTTACAGAAGATTACATTAAGGAGCACATTGATCCCATTTTTAAATCGAAAGGAAAC 713
Query 717 ATTCGAGTTGCATCATACTTCCCTTCTGTAAACTTGAGAAAATCCTCACAAGATGGCGAA 776
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 714 ATTCGAGTCGCATCATACTTCCCTTCTGTAAACTTGAGGAAATCCTCACAAGATGGCGAA 773
Query 777 ACTGATCCTGTAGCCTGTTTAGCAATGTTTGGGTCTTTGGAGTTGCAACCTGAAGTGAAT 836
|||||||||||||| |||||||||||||||||||| |||||| ||||||| |||||||||
Sbjct 774 ACTGATCCTGTAGCATGTTTAGCAATGTTTGGGTCATTGGAGCTGCAACCCGAAGTGAAT 833
Query 837 GCAGTGGCTGAATCAATGGTTGAGCGGTTGAGGACTCATAGCCGTAAATCCGGTGGCCGT 896
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 834 GCAGTGGCTGAATCAATGGTTGAGCGGTTGAGGACTCATAGCCGGAAATCAGGTGGGCGT 893
Query 897 TTCATAGCAGTAGACCTTAGAATCGACATACTTGAGAAGAAAAATTGCCATACAACTGGT 956
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 894 TTCATAGCAGTAGACCTTAGAATCGACATACTTGAGAAGAAAAATTGTCATACCACTGGT 953
Query 957 GTAGTAGGGTCCAAGACATGTTACAACGCTCAAGAGATTGCTTTATTCTTGAG-AAAGCT 1015
|||||||||||||||||||||||||| || |||||||||||||| |||||||| ||| ||
Sbjct 954 GTAGTAGGGTCCAAGACATGTTACAATGCGCAAGAGATTGCTTTGTTCTTGAGGAAA-CT 1012
Query 1016 TGGATTTGCCAGCGACACAACTATCTATCTGACTCAGCCAAGATGGGACAGTAGCCTCAA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TGGATTTGCCAGCGACACAACTATCTATCTGACTCAGCCAAGATGGGACAGTAGCCTCAA 1072
Query 1076 TATCCTTAAGGATATCTTCCCAAAAACATTCACTAAGGAGGCAATAATGCCGGCAAGTAA 1135
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1073 TATCCTTAAGGATATCTTCCCGAAAACATTCACAAAGGAGGCAATAATGCCGGCAAGTAA 1132
Query 1136 GAGATCAAAGTACCTTGAATCAGTGAGTTCCGAGTACGAAAATGTTATCGACTTCTACAT 1195
|||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||
Sbjct 1133 GAGATCGAAGTACCTTGAATCAGAGAGTTCTGAGTACGAAAATGTTATCGACTTCTATAT 1192
Query 1196 AAGCTCAAGAAGCGATGTCTTTGTTCCAGCCATCTCCGGTCTGTTTTATGCAAACACCGT 1255
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1193 AAGCTCAAGAAGCGATGTCTTTGTTCCAGCCATATCCGGTCTGTTTTACGCAAACACCGT 1252
Query 1256 TGGCAAAAGGATAGCTTTAGGTAAGCCTCAAGTGTTAGTTCCAGCAGAAATCTCAGAGAC 1315
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1253 TGGCAAAAGGATAGCTTTAGGTAAGCCTCAAGTGCTAGTTCCAGCAGAAATCTCAGAGAT 1312
Query 1316 ATCTGGCCTTGCTACAGATTTCATCTCTCCATACATCTCAAAGAAGAACCATTTGGCTTA 1375
|||||||| ||||||||||||||||||||| ||||| ||||||||||| || ||||||||
Sbjct 1313 ATCTGGCCGTGCTACAGATTTCATCTCTCCGTACATTTCAAAGAAGAATCACTTGGCTTA 1372
Query 1376 TTCATGCTTTTGCTGACCTTCTCGCATTTCTAAAGTAATCTCCACGCATACTTCCAT-GG 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1373 TTCATGCTTTTGCTGACCTTCTCGCATTTCTAAAGTAATCTCCACGCATACTTCC-TCGG 1431
Query 1435 AAGGGCCTTCTCAGTTTTCATCAAGTGTAAGCaatttaattatttttcttgtttttaatt 1494
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1432 AAGGGACTTCTCAGTTTTCATCAAGTGTAAGCAATTTAATTATTTT-CTTGTTTTTATTT 1490
Query 1495 tgtaagtttgtttcaatataagttggtttttttgGGC-AGTGAGGTTTACAGTTTGAATC 1553
|||||||||||||||||||| ||||||||||| |||| |||||| |||||||||||||||
Sbjct 1491 TGTAAGTTTGTTTCAATATATGTTGGTTTTTTGGGGCGAGTGAGATTTACAGTTTGAATC 1550
Query 1554 TGTTGGCTCATAGCTTTTGCATTCTATAAATTTTGCTCTATAGTAAGAAACACATATATT 1613
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1551 TGTTGGGTCATAGCTTTTGCATTCTATAAATTTTGCTCTATAGTAAGAAACACATAAATT 1610
Query 1614 GTTTGTAAGATTGATTTTAGTGTTGAGGGTTTCTATTGAAGGAAGAACCATGTGAACT 1671
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1611 GTTTGTAAGATTGATTTTAGTGTTGAGGGTTTCTAATGAAGGAAGAACCATGTGAACT 1668
> Ahg923651 jgi|Araly1|923651|scaffold_104932.1
Length=1341
Score = 1173 bits (635), Expect = 0.0
Identities = 1088/1302 (84%), Gaps = 49/1302 (4%)
Strand=Plus/Plus
Query 123 ATGGGTGTTGATTTGAGGCAAGTAGTTGCTGGTATTCTCACCATTACCATGTTTGTGATG 182
|||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||||
Sbjct 22 ATGGGTGTGGATTTGAGGCAAGTGGTGGCTGGAATTCTGACCATTACCATGTTTGTGATG 81
Query 183 CTTGGACAGATGCTTCATAGAGATTACTTTGATTCTCTTCAGGAGAAAGCTCAGGGAGAT 242
|||||||| |||||||||||||||||||||||| || |||||||||||| ||| ||||||
Sbjct 82 CTTGGACAAATGCTTCATAGAGATTACTTTGATGCTGTTCAGGAGAAAGTTCAAGGAGAT 141
Query 243 GCACAAGATATTGAATTTGAAGGATCTAA-AGTCTCTGT-GAAAGATGGTCTTGTCGGAA 300
||||| ||||||||||| | ||||| || ||| |||| ||| ||||| ||||| ||
Sbjct 142 GCACATGATATTGAATTCCAGGGATC-AAGAGTAGCTGTTGAA-GATGGACTTGTTAGAG 199
Query 301 CCGTTGAAGGCAG---TAAAGGACTTTGGATGGAAGATAAC-ACTG-ATCTTACTCCTTG 355
|| ||||||| | |||||| | |||||||||||||| | | || | |||| |||||
Sbjct 200 CCTTTGAAGGTGGGAATAAAGGTCCTTGGATGGAAGATAGCCA-TGGA-CTTAAACCTTG 257
Query 356 TTGGCCAACAT-TACTATCTGATGACGCTGTATCATCGAAAGGGT-ATGTTACATTCTCA 413
|||| | | || | | ||||||||| || ||||| ||||| |||| |||||||||||||
Sbjct 258 TTGGTCTATATCT-CAATCTGATGAAGCGGTATCGTCGAA-GGGTTATGTTACATTCTC- 314
Query 414 CTTACC-AATGGTCCTGAGTACCATATCTCTCAGATCACTGATGCTGTAATGGTGGCTAA 472
|||| | ||||||||||| |||||| | |||||||| || ||||| || |||||||| ||
Sbjct 315 CTTAACGAATGGTCCTGAATACCATGTTTCTCAGATTACGGATGCCGTTATGGTGGCGAA 374
Query 473 GCATCTTGGAGCAACTCTAGTACTTCCTGATATAAGAGGAAGCAAACCTGGTGATGAAAG 532
|||||||||||||||||| || ||||| || || |||||||||||||||||||||||||
Sbjct 375 GCATCTTGGAGCAACTCTTGTGCTTCCAGACATTAGAGGAAGCAAACCTGGTGATGAAAT 434
Query 533 GAATTTTGAAGATATCTATGATGCGGATAAGCTGATTAAAAGCTTGGAAAATGTCGTTAA 592
||| ||||||||||||||||||| |||||| || |||||||||||||||| |||||| ||
Sbjct 435 GAACTTTGAAGATATCTATGATGTGGATAAACTCATTAAAAGCTTGGAAAGTGTCGTCAA 494
Query 593 AGTTGTGAAA-AAATTGCCTGAAGA-A-GTTTCTCTAAG-GAACATGGCCATTGTGAAGG 648
|||||| || |||||||| || | | || |||||||| || || |||||||| ||||
Sbjct 495 AGTTGT-AAGGAAATTGCC-GA-GCCATGTATCTCTAAGAGAT-ATCGCCATTGTTAAGG 550
Query 649 TCCCTACCAGAGTTACAGAAGATTACATTAAAGAGCACATTGATCCCATCTTTAAATCTA 708
| |||||| ||||| ||||||||||||| || || || ||||| |||||||| ||||| |
Sbjct 551 TTCCTACCCGAGTTGCAGAAGATTACATCAAGGAACATATTGACCCCATCTTCAAATCAA 610
Query 709 AAGGAAACATTCGAGTTGCATCATACTTCCCTTCTGTAAACTTGAGAAAATCCTCACAAG 768
|||| || || ||||| || | || ||||||||||| || ||||| ||||| || || |
Sbjct 611 AAGGGAATATAAGAGTTACAACCTATTTCCCTTCTGTGAATTTGAGGAAATCTTCGCAGG 670
Query 769 ATGGC-GAAACTGATCCTGTAGCCTGTTTAGCAATGTTTGGGTCTTTGGAGTTGCAACCT 827
|| | ||||| || ||||| | ||||| ||||||||||| || ||||| |||||||
Sbjct 671 GTG-CTGAAACCGACCCTGTCTCTTGTTTGGCAATGTTTGGCTCCTTGGAATTGCAACAG 729
Query 828 GAAGTGAATGCAGTGGCTGAATCAATGGTTGAGCGGTTGAGGACTCATAGCC-GTAAATC 886
| |||||||| | ||| |||||| ||| || ||||||||| ||| |||||| | |||||
Sbjct 730 GGAGTGAATGAATTGGTTGAATCGATGATTCAGCGGTTGAAGACACATAGCAAG-AAATC 788
Query 887 CGGTGGCCGTTTCATAGC-AGTAGACCTT-AGAATCGACATACTTGAGAAGAAAAATTGC 944
|||||||||||||||||| | ||||| || || | || |||||||| ||||||||||||
Sbjct 789 CGGTGGCCGTTTCATAGCCA-TAGAC-TTGAGGGTTGAGATACTTGAAAAGAAAAATTGC 846
Query 945 CAT-ACAACTGGTG-TAGTAGGG-TCCAAGACATGTTACAACGCTCAAGAGATTGCTTTA 1001
||| | ||| |||| | || ||| ||||| |||||||||||||| ||||||||||| ||
Sbjct 847 CATGA-AACAGGTGCT-GT-GGGATCCAAAACATGTTACAACGCACAAGAGATTGCATTG 903
Query 1002 TTCTTGAGAAAGCTTGGATTTGCCAGCGACACAACTATCTATCTGACTCAGCCAAGATGG 1061
|||||||| ||||||||||||| |||||| |||||||| |||||||||||||||||||||
Sbjct 904 TTCTTGAGGAAGCTTGGATTTGACAGCGATACAACTATATATCTGACTCAGCCAAGATGG 963
Query 1062 GACAGTAGCCTCAATATCCTTAAGGATATCTTCCCAAAAACAT-TCACTAAGGAGGCAAT 1120
|| || ||||||||||| |||||||| || ||||| ||||||| | ||||||||||| ||
Sbjct 964 GAGAGCAGCCTCAATATTCTTAAGGACATTTTCCCGAAAACATAT-ACTAAGGAGGCGAT 1022
Query 1121 AATGCCGGCA-AGTAAGAGATCAAAGTACCTTGAATCAGTGAGTTCCGAGTACGAAAATG 1179
||||||| || | ||||| ||| ||||||||||||| || | ||| || || |||||||
Sbjct 1023 AATGCCGTCAGA-TAAGAAATCGAAGTACCTTGAATTAGAAAATTCTGAATATGAAAATG 1081
Query 1180 TTATCGACTTCTACATAAGCTCAAGAAGCGATGTCTTTGTTCCAGCCATCTCC-GGTCTG 1238
|||| |||||||||||||| ||||| || ||||| ||||| |||||||| ||| ||||||
Sbjct 1082 TTATTGACTTCTACATAAGTTCAAGGAGTGATGTATTTGTGCCAGCCAT-TCCCGGTCTG 1140
Query 1239 TTTTATGCAAACACCGTTGGCAAAAGGATAGCTTTAGGTAAGCCTCAAGTGT-TAGTTCC 1297
||||| || ||||| ||||| ||||||||||||||||| ||||||||||| | | |||||
Sbjct 1141 TTTTACGCCAACACAGTTGGAAAAAGGATAGCTTTAGGCAAGCCTCAAGT-TCTCGTTCC 1199
Query 1298 AGCAGAAATCTCAGAGACATCTGGCCTTGCTAC-AGATTTCATCTCTCCATACATCTCAA 1356
||| || ||||||| |||||| || || | || | ||| ||||||||| ||||| ||||
Sbjct 1200 AGCCGAGATCTCAGGGACATCCGGTGTTCCCACTA-ATTACATCTCTCCCTACATATCAA 1258
Query 1357 AGAAGAACCATTTGGCTTATTCATGCTTTTGCTGACCTTCTC 1398
|||||||||| ||||| |||||||||||||||||| ||||||
Sbjct 1259 AGAAGAACCACTTGGCGTATTCATGCTTTTGCTGAACTTCTC 1300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62658453025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5