BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21215.1 Length=2130 Score E Sequences producing significant alignments: (Bits) Value Ahg479641 jgi|Araly1|479641|fgenesh2_kg.3__2342__AT3G21215.1 2721 0.0 > Ahg479641 jgi|Araly1|479641|fgenesh2_kg.3__2342__AT3G21215.1 Length=1810 Score = 2721 bits (1473), Expect = 0.0 Identities = 1677/1773 (95%), Gaps = 23/1773 (1%) Strand=Plus/Plus Query 61 tttttttATCTCATGGCCGGCGCCGGAATCCACCCATACCACCAGCAGTGGCCGCCGGCA 120 |||||| |||||||||||||||||||||||||||| ||||| |||||||||||||| ||| Sbjct 46 TTTTTTGATCTCATGGCCGGCGCCGGAATCCACCCTTACCATCAGCAGTGGCCGCCTGCA 105 Query 121 GGTGCGCCGCCTCCTCCAGCCGCAGTATCATCAGCTGCTCCACCACATCCGCCGCCCATT 180 |||||||| |||||||| || |||||||| |||||||||||||||||||| ||||||||| Sbjct 106 GGTGCGCCACCTCCTCCCGCTGCAGTATCCTCAGCTGCTCCACCACATCCCCCGCCCATT 165 Query 181 CATCACCATCCTCCTCCTCCTCCTGTTTTAGTTGACAACCATAATCGTCCTCCTTATGAC 240 ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 166 CATCATCATCATCCTCCTCCTCCTGTTTTAGTTGACAACCATAATCGTCCTCCTTACGAC 225 Query 241 GAGCTGCGGACAATCTTCATCGCAGGGCTTCCCGATGATGTAAAAGAGAGAGAGCTTTTG 300 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 226 GAGCTTCGGACAATCTTCATCGCAGGGCTTCCCGATGATGTAAAAGAGAGAGAGCTTTTG 285 Query 301 AATCTCTTGAGATGGTTGCCTGGTTACGAGGCTTCTCAGGTGAACTTCAAGGGAGAAAAG 360 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 286 AATCTTTTAAGATGGTTGCCTGGTTACGAGGCTTCTCAGGTGAACTTCAAGGGAGAAAAG 345 Query 361 CCCATGGGGTTTGCTCTTTTCTCCACAGCTCAGTTTGCAATGGCAGCCAAAGATACCCTT 420 || ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 346 CCTATGGGGTTTGCTCTTTTCTCCACGGCTCAGTATGCAATGGCAGCCAAAGATACCCTT 405 Query 421 CAGCATATGGTGTTTGATGCTGAGTCAAAGTCTGTGATACATACAGAGATGGCCAAGAAG 480 |||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 406 CAGCATCTTGTGTTTGATGCTGAGTCGAAGTCTGTGATACATACAGAGATGGCCAAGAAG 465 Query 481 AATCTTTTTGTTAAAAGAGGTATTGTTGGGGATTCAAATGCTTATGATCAAAGTAAGCGC 540 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 AATCTCTTTGTTAAAAGAGGTATTGTTGGGGATTCAAATGCTTATGATCAAAGTAAGCGC 525 Query 541 CTACGAACTGGTGGTGACTGCACACACTCTGTGTATAGTCCATCTCCTTTCCATC-CTCC 599 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 526 CTACGAACTGGTGGTGACTGCACACACTCTGTGTATAGTCCATCTCCTTTCCA-CGCTCC 584 Query 600 ACCTCCTCCTGTGTGGGGACCTCCTCATGGATATATGGCACCTGCACCTCCACCATATGA 659 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 585 ACCTCCTCCAGTGTGGGGACCTCCTCATGGGTATATGGCACCTGCACCTCCACCATATGA 644 Query 660 TCCCTATGCAGGTTATCATGCTCCCCCTGTACCAATGCCTACGCCCCCACCTATAGCAGC 719 |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 645 TCCCTATGCAGGTTATCATGCTCCACCTGTACCAATGCCTGCGCCCCCACCTATAGCAGC 704 Query 720 TCCTAGTTCTTATGTGCCTGTCCAGAATATTAAGGATAATCCACCTTGCAATACCCTATT 779 ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 705 TCCAAGTTCATATGTGCCTGTCCAGAATATTAAGGATAATCCCCCTTGCAATACCCTATT 764 Query 780 TATTGGTAATCTTGGGGAGAATATAAACGAAGAAGAATTGAGGAGCCTGTTGAGTGCGCA 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 765 TATTGGTAATCTTGGGGAGAATATAAACGAAGAAGAATTGAGGAGCCTGTTGAGCGCGCA 824 Query 840 ACCTGGTTTCAAACAAATGAAGATTCTGAGACAAGAAAGGCATACAGTTTGCTTTATTGA 899 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 825 ACCTGGTTTCAAACAAATGAAGATTCTGAGACAAGAAAGGCATACAGTATGCTTTATTGA 884 Query 900 ATTCGAGGATGTCAATAGTGCCACAAATGTTCACCATAATTTGCAAGGTGCTGTCATTCC 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 885 ATTCGAGGATGTCAATAGTGCCACAAATGTTCACCATAATTTGCAAGGTGCTGTCATTCC 944 Query 960 AAGTTCTGGTTCAATTGGCATGAGGATCCAATATTCAAAGAATCCATATGGGAAGAGAAA 1019 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 945 AAGTTCTGGTTCAATTGGCATGAGGATCCAATATTCAAAGAATCCATATGGGAAGAGAAA 1004 Query 1020 GGAAGGTGGCGGCTATTCTTTCTTTCCTTCTCCGAGTGCTAATGGAGCCCAAGGAGCCCT 1079 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 1005 GGAAGGTGGCGGCTATTCTTTCTTTCCTTCTCCGAGTGCAAATGGAGCCCAAGGAGCTCT 1064 Query 1080 GACATATCAGTAGGCCTTGAAGGGGGACGTACTCTCTTCCTTATCTCCCAACAACTGCAC 1139 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1065 GACATATCAGTAGGCCTTGTAGGGGGACGTACTCTCTTCCTTATCTCCCAACAACTGCAC 1124 Query 1140 GAATACGATGCATCTTCCAGGCAGTCTGCATTTCATCCATTTCCATTCTCGACATTTTTA 1199 ||||| |||||||||| ||||||||| ||||| ||||||||| ||||||| ||||||||| Sbjct 1125 GAATAGGATGCATCTTGCAGGCAGTCCGCATTGCATCCATTTTCATTCTCAACATTTTTA 1184 Query 1200 AGCATCAGCATTGCTT-T--GTCATGTGTTGGGTGCATATAGTGTGACCTCATCAACATA 1256 |||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| Sbjct 1185 AGCATCAGCATTGCTTCTTTGTCATGTGTTGGATGCATATAGTGTGACCTCATCAACATA 1244 Query 1257 TAACATGTTTCAGTTTCTATTAGCTCTGCTACATGCATTCGCAGTGTGGTTTTTGATGAT 1316 |||||| || ||||||||||||||| | |||||||||||||||| ||||||||||||||| Sbjct 1245 TAACAT-TT-CAGTTTCTATTAGCTTTACTACATGCATTCGCAGCGTGGTTTTTGATGAT 1302 Query 1317 TGTTTGAATTATATAGGAGTTTGGTTTGCTATTTGTTTATCTTATTGCGGCTTTAATACA 1376 |||||||||| | |||||||||||||||| ||||||||||||||||||||||| || ||| Sbjct 1303 TGTTTGAATTCTGTAGGAGTTTGGTTTGCCATTTGTTTATCTTATTGCGGCTT-AACACA 1361 Query 1377 TCACTTTGTGGGATTCATTTTC-ATCATTCTGATCGATTCATCCTAATGAAACG-TTAGC 1434 |||||| |||||| |||||||| | ||||||||| ||||||||||||||||||| || | Sbjct 1362 TCACTTGGTGGGACTCATTTTCGA-CATTCTGATTGATTCATCCTAATGAAACGCTT-GA 1419 Query 1435 TAGGAAAA-AACATAACATTACATTAGATCATAACATGATAACATCCGGAGGCCTTCCAT 1493 || || | |||||||||||||||||||||||||||||||| |||| |||||||| ||| Sbjct 1420 TAT-AACATAACATAACATTACATTAGATCATAACATGATATTATCCAGAGGCCTTTCAT 1478 Query 1494 CAACTTCGTTTCACTGCATGGACACGGAATGTTGCTCTCATG-ATTGATTCATCCTAACG 1552 ||||||| ||||||||||||||| |||||||||||||| || || |||||||||||| | Sbjct 1479 CAACTTCACTTCACTGCATGGACATGGAATGTTGCTCTC-TGGATCGATTCATCCTAATG 1537 Query 1553 AAACTCCATTTGCTATGTTAGCT-GATATACCATTACATTAGATCATAACATGATAACAT 1611 ||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 1538 AAAGTCCATTTGCTATGTTAGCTTGATATAACATTACATTAGATCATAACATGATAACAT 1597 Query 1612 CCAGAGGGGTTTGATCAACTTCGTTTCACTGCATAGACATGGAATATTACTCTCATGATC 1671 |||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct 1598 CCAGAGGGCTTTGATCAACTTCGTTTCACTGCATGGACATGGAATGTTACTCTCATGATC 1657 Query 1672 TATCACATCGGTTTCATTCTTCAGCATTTCCCATGTCGATCATTCTCTGTTCTTACTTAG 1731 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1658 TATCACATCGGTGTCATTCTTCAGCATTTCCCATGTCGATCATTCACTGTTCTTACTTAG 1717 Query 1732 GCTGATGAACAAGCACATCCGTTTTGTCAG------AAGTTGACAGCTGATATAACATTT 1785 |||||||||||||||||||| ||||||||| ||||||||||||||| |||||||| Sbjct 1718 GCTGATGAACAAGCACATCCATTTTGTCAGTTGTTGAAGTTGACAGCTGATTTAACATTT 1777 Query 1786 GAAGATAGGCATTCCATTACATTGTAGGTTTAT 1818 ||||||||||| ||||||||||||||||||||| Sbjct 1778 GAAGATAGGCACTCCATTACATTGTAGGTTTAT 1810 Score = 137 bits (74), Expect = 3e-31 Identities = 120/141 (85%), Gaps = 7/141 (5%) Strand=Plus/Plus Query 1404 TCT-GATCGATTCATCCTAATGAAA---CGTTAGCTA-G-GA-AAAAACATAACATTACA 1456 ||| ||||||||||||||||||||| | || |||| | | | ||||||||||| Sbjct 1516 TCTGGATCGATTCATCCTAATGAAAGTCCATTTGCTATGTTAGCTTGATATAACATTACA 1575 Query 1457 TTAGATCATAACATGATAACATCCGGAGGCCTTCCATCAACTTCGTTTCACTGCATGGAC 1516 |||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||| Sbjct 1576 TTAGATCATAACATGATAACATCCAGAGGGCTTTGATCAACTTCGTTTCACTGCATGGAC 1635 Query 1517 ACGGAATGTTGCTCTCATGAT 1537 | |||||||| |||||||||| Sbjct 1636 ATGGAATGTTACTCTCATGAT 1656 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80141875480 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5