BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21215.1
Length=2130
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479641 jgi|Araly1|479641|fgenesh2_kg.3__2342__AT3G21215.1 2721 0.0
> Ahg479641 jgi|Araly1|479641|fgenesh2_kg.3__2342__AT3G21215.1
Length=1810
Score = 2721 bits (1473), Expect = 0.0
Identities = 1677/1773 (95%), Gaps = 23/1773 (1%)
Strand=Plus/Plus
Query 61 tttttttATCTCATGGCCGGCGCCGGAATCCACCCATACCACCAGCAGTGGCCGCCGGCA 120
|||||| |||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 46 TTTTTTGATCTCATGGCCGGCGCCGGAATCCACCCTTACCATCAGCAGTGGCCGCCTGCA 105
Query 121 GGTGCGCCGCCTCCTCCAGCCGCAGTATCATCAGCTGCTCCACCACATCCGCCGCCCATT 180
|||||||| |||||||| || |||||||| |||||||||||||||||||| |||||||||
Sbjct 106 GGTGCGCCACCTCCTCCCGCTGCAGTATCCTCAGCTGCTCCACCACATCCCCCGCCCATT 165
Query 181 CATCACCATCCTCCTCCTCCTCCTGTTTTAGTTGACAACCATAATCGTCCTCCTTATGAC 240
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 166 CATCATCATCATCCTCCTCCTCCTGTTTTAGTTGACAACCATAATCGTCCTCCTTACGAC 225
Query 241 GAGCTGCGGACAATCTTCATCGCAGGGCTTCCCGATGATGTAAAAGAGAGAGAGCTTTTG 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 GAGCTTCGGACAATCTTCATCGCAGGGCTTCCCGATGATGTAAAAGAGAGAGAGCTTTTG 285
Query 301 AATCTCTTGAGATGGTTGCCTGGTTACGAGGCTTCTCAGGTGAACTTCAAGGGAGAAAAG 360
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 AATCTTTTAAGATGGTTGCCTGGTTACGAGGCTTCTCAGGTGAACTTCAAGGGAGAAAAG 345
Query 361 CCCATGGGGTTTGCTCTTTTCTCCACAGCTCAGTTTGCAATGGCAGCCAAAGATACCCTT 420
|| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 346 CCTATGGGGTTTGCTCTTTTCTCCACGGCTCAGTATGCAATGGCAGCCAAAGATACCCTT 405
Query 421 CAGCATATGGTGTTTGATGCTGAGTCAAAGTCTGTGATACATACAGAGATGGCCAAGAAG 480
|||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 406 CAGCATCTTGTGTTTGATGCTGAGTCGAAGTCTGTGATACATACAGAGATGGCCAAGAAG 465
Query 481 AATCTTTTTGTTAAAAGAGGTATTGTTGGGGATTCAAATGCTTATGATCAAAGTAAGCGC 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 AATCTCTTTGTTAAAAGAGGTATTGTTGGGGATTCAAATGCTTATGATCAAAGTAAGCGC 525
Query 541 CTACGAACTGGTGGTGACTGCACACACTCTGTGTATAGTCCATCTCCTTTCCATC-CTCC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 526 CTACGAACTGGTGGTGACTGCACACACTCTGTGTATAGTCCATCTCCTTTCCA-CGCTCC 584
Query 600 ACCTCCTCCTGTGTGGGGACCTCCTCATGGATATATGGCACCTGCACCTCCACCATATGA 659
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 585 ACCTCCTCCAGTGTGGGGACCTCCTCATGGGTATATGGCACCTGCACCTCCACCATATGA 644
Query 660 TCCCTATGCAGGTTATCATGCTCCCCCTGTACCAATGCCTACGCCCCCACCTATAGCAGC 719
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 645 TCCCTATGCAGGTTATCATGCTCCACCTGTACCAATGCCTGCGCCCCCACCTATAGCAGC 704
Query 720 TCCTAGTTCTTATGTGCCTGTCCAGAATATTAAGGATAATCCACCTTGCAATACCCTATT 779
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 705 TCCAAGTTCATATGTGCCTGTCCAGAATATTAAGGATAATCCCCCTTGCAATACCCTATT 764
Query 780 TATTGGTAATCTTGGGGAGAATATAAACGAAGAAGAATTGAGGAGCCTGTTGAGTGCGCA 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 765 TATTGGTAATCTTGGGGAGAATATAAACGAAGAAGAATTGAGGAGCCTGTTGAGCGCGCA 824
Query 840 ACCTGGTTTCAAACAAATGAAGATTCTGAGACAAGAAAGGCATACAGTTTGCTTTATTGA 899
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 825 ACCTGGTTTCAAACAAATGAAGATTCTGAGACAAGAAAGGCATACAGTATGCTTTATTGA 884
Query 900 ATTCGAGGATGTCAATAGTGCCACAAATGTTCACCATAATTTGCAAGGTGCTGTCATTCC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 ATTCGAGGATGTCAATAGTGCCACAAATGTTCACCATAATTTGCAAGGTGCTGTCATTCC 944
Query 960 AAGTTCTGGTTCAATTGGCATGAGGATCCAATATTCAAAGAATCCATATGGGAAGAGAAA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 AAGTTCTGGTTCAATTGGCATGAGGATCCAATATTCAAAGAATCCATATGGGAAGAGAAA 1004
Query 1020 GGAAGGTGGCGGCTATTCTTTCTTTCCTTCTCCGAGTGCTAATGGAGCCCAAGGAGCCCT 1079
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1005 GGAAGGTGGCGGCTATTCTTTCTTTCCTTCTCCGAGTGCAAATGGAGCCCAAGGAGCTCT 1064
Query 1080 GACATATCAGTAGGCCTTGAAGGGGGACGTACTCTCTTCCTTATCTCCCAACAACTGCAC 1139
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 GACATATCAGTAGGCCTTGTAGGGGGACGTACTCTCTTCCTTATCTCCCAACAACTGCAC 1124
Query 1140 GAATACGATGCATCTTCCAGGCAGTCTGCATTTCATCCATTTCCATTCTCGACATTTTTA 1199
||||| |||||||||| ||||||||| ||||| ||||||||| ||||||| |||||||||
Sbjct 1125 GAATAGGATGCATCTTGCAGGCAGTCCGCATTGCATCCATTTTCATTCTCAACATTTTTA 1184
Query 1200 AGCATCAGCATTGCTT-T--GTCATGTGTTGGGTGCATATAGTGTGACCTCATCAACATA 1256
|||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct 1185 AGCATCAGCATTGCTTCTTTGTCATGTGTTGGATGCATATAGTGTGACCTCATCAACATA 1244
Query 1257 TAACATGTTTCAGTTTCTATTAGCTCTGCTACATGCATTCGCAGTGTGGTTTTTGATGAT 1316
|||||| || ||||||||||||||| | |||||||||||||||| |||||||||||||||
Sbjct 1245 TAACAT-TT-CAGTTTCTATTAGCTTTACTACATGCATTCGCAGCGTGGTTTTTGATGAT 1302
Query 1317 TGTTTGAATTATATAGGAGTTTGGTTTGCTATTTGTTTATCTTATTGCGGCTTTAATACA 1376
|||||||||| | |||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 1303 TGTTTGAATTCTGTAGGAGTTTGGTTTGCCATTTGTTTATCTTATTGCGGCTT-AACACA 1361
Query 1377 TCACTTTGTGGGATTCATTTTC-ATCATTCTGATCGATTCATCCTAATGAAACG-TTAGC 1434
|||||| |||||| |||||||| | ||||||||| ||||||||||||||||||| || |
Sbjct 1362 TCACTTGGTGGGACTCATTTTCGA-CATTCTGATTGATTCATCCTAATGAAACGCTT-GA 1419
Query 1435 TAGGAAAA-AACATAACATTACATTAGATCATAACATGATAACATCCGGAGGCCTTCCAT 1493
|| || | |||||||||||||||||||||||||||||||| |||| |||||||| |||
Sbjct 1420 TAT-AACATAACATAACATTACATTAGATCATAACATGATATTATCCAGAGGCCTTTCAT 1478
Query 1494 CAACTTCGTTTCACTGCATGGACACGGAATGTTGCTCTCATG-ATTGATTCATCCTAACG 1552
||||||| ||||||||||||||| |||||||||||||| || || |||||||||||| |
Sbjct 1479 CAACTTCACTTCACTGCATGGACATGGAATGTTGCTCTC-TGGATCGATTCATCCTAATG 1537
Query 1553 AAACTCCATTTGCTATGTTAGCT-GATATACCATTACATTAGATCATAACATGATAACAT 1611
||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1538 AAAGTCCATTTGCTATGTTAGCTTGATATAACATTACATTAGATCATAACATGATAACAT 1597
Query 1612 CCAGAGGGGTTTGATCAACTTCGTTTCACTGCATAGACATGGAATATTACTCTCATGATC 1671
|||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1598 CCAGAGGGCTTTGATCAACTTCGTTTCACTGCATGGACATGGAATGTTACTCTCATGATC 1657
Query 1672 TATCACATCGGTTTCATTCTTCAGCATTTCCCATGTCGATCATTCTCTGTTCTTACTTAG 1731
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1658 TATCACATCGGTGTCATTCTTCAGCATTTCCCATGTCGATCATTCACTGTTCTTACTTAG 1717
Query 1732 GCTGATGAACAAGCACATCCGTTTTGTCAG------AAGTTGACAGCTGATATAACATTT 1785
|||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||
Sbjct 1718 GCTGATGAACAAGCACATCCATTTTGTCAGTTGTTGAAGTTGACAGCTGATTTAACATTT 1777
Query 1786 GAAGATAGGCATTCCATTACATTGTAGGTTTAT 1818
||||||||||| |||||||||||||||||||||
Sbjct 1778 GAAGATAGGCACTCCATTACATTGTAGGTTTAT 1810
Score = 137 bits (74), Expect = 3e-31
Identities = 120/141 (85%), Gaps = 7/141 (5%)
Strand=Plus/Plus
Query 1404 TCT-GATCGATTCATCCTAATGAAA---CGTTAGCTA-G-GA-AAAAACATAACATTACA 1456
||| ||||||||||||||||||||| | || |||| | | | |||||||||||
Sbjct 1516 TCTGGATCGATTCATCCTAATGAAAGTCCATTTGCTATGTTAGCTTGATATAACATTACA 1575
Query 1457 TTAGATCATAACATGATAACATCCGGAGGCCTTCCATCAACTTCGTTTCACTGCATGGAC 1516
|||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct 1576 TTAGATCATAACATGATAACATCCAGAGGGCTTTGATCAACTTCGTTTCACTGCATGGAC 1635
Query 1517 ACGGAATGTTGCTCTCATGAT 1537
| |||||||| ||||||||||
Sbjct 1636 ATGGAATGTTACTCTCATGAT 1656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80141875480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5