BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21220.1
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479642 jgi|Araly1|479642|fgenesh2_kg.3__2343__AT3G21220.1 2015 0.0
Ahg474280 jgi|Araly1|474280|fgenesh2_kg.1__4234__AT1G51660.1 780 0.0
> Ahg479642 jgi|Araly1|479642|fgenesh2_kg.3__2343__AT3G21220.1
Length=1445
Score = 2015 bits (1091), Expect = 0.0
Identities = 1310/1409 (93%), Gaps = 42/1409 (3%)
Strand=Plus/Plus
Query 93 CTGGAAGATAAAGAATCAACCTTGTG-aaa-aaaaa-aaaaaa-CTTTTGA-T-TC-C-C 144
|||||||| ||||||||||||||||| ||| ||||| |||||| ||||||| | || | |
Sbjct 63 CTGGAAGAGAAAGAATCAACCTTGTGAAAACAAAAACAAAAAACCTTTTGAGTCTCTCTC 122
Query 145 ---TCTTCTTCTAAAAGCCATGAAACCGATTCAATCTCCTTCT---GGAGTAGCTTCACC 198
||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 123 GATTCTTCTTCTAAAAGCCATGAAACCGATTCAATCTCCTCCTGGAGGAGTAGCTTCACC 182
Query 199 TATGAAGAACCGTTTACGCAAACGTCCTGACCTAAGCTTACCACTCCCACACCGCGACGT 258
|| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 183 TACCAAGAACCGTTCACGCAAACGTCCTGACCTAAGCTTACCACTCCCACACCGTGACGT 242
Query 259 CGCTCTCGCCGTACCTCTCCCTCTCCCACCTCCTTCTTCCTCTTCATCCGCTCCGGCGTC 318
|||||||||||||||||||||||||||||| || || ||||| || ||||||||||||||
Sbjct 243 CGCTCTCGCCGTACCTCTCCCTCTCCCACCACCCTCCTCCTCCTCTTCCGCTCCGGCGTC 302
Query 319 TTCCTCCGCGATCTCAACCAACATCTCCGCCGCTAAAAGCTTATCCGAGCTAGAACGAGT 378
|| || |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 303 GTCATCTGCGATCTCAACCAACATCTCCGCCGCGAAAAGCTTATCGGAGCTAGAACGGGT 362
Query 379 GAACCGAATCGGAAGCGGAGCCGGAGGAACGGTTTACAAAGTAATCCACACTCCGACGTC 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GAACCGAATCGGAAGCGGAGCCGGAGGAACGGTTTACAAAGTAATCCACACTCCGACGTC 422
Query 439 ACGTCCTTTCGCTCTCAAAGTGATTTACGGAAACCACGAAGATACCGTGAGACGTCAGAT 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 ACGTCCTTTCGCTCTCAAAGTGATTTACGGAAACCACGAAGATACCGTGAGACGTCAGAT 482
Query 499 CTGTAGAGAGATCGAGATCTTAAGAAGTGTTGATCATCCAAACGTTGTGAAATGTCACGA 558
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 483 CTGTAGAGAGATCGAGATCTTACGAAGTGTTGATCATCCAAACGTTGTGAAATGTCACGA 542
Query 559 TATGTTTGATCATAACGGTGAGATCCAGGTTTTGCTTGAGTTTATGGATCAAGGATCTCT 618
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 AATGTTTGATCATAACGGTGAGATCCAGGTTTTGCTTGAGTTTATGGATCAAGGATCTCT 602
Query 619 TGAAGGAGCTCATATATGGCAAGAACAGGAATTAGCTGATCTCTCTCGTCAGATTCTTAG 678
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TGAAGGAGCTCATGTATGGCAAGAACAGGAATTAGCTGATCTCTCTCGTCAGATTCTTAG 662
Query 679 TGGATTAGCTTATCTTCATCGTCGTCATATCGTTCATCGTGATATCAAACCTTCGAATCT 738
||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 663 TGGTTTAGCTTATCTTCATCGCCGTCACATCGTTCACCGTGATATCAAACCTTCGAATCT 722
Query 739 TCTTATAAACTCAGCTAAAAATGTGAAAATTGCTGATTTTGGTGTGAGTAGGATCTTGGC 798
||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TCTCATTAACTCAGCTAAGAATGTGAAAATTGCTGATTTTGGTGTGAGTAGGATCTTGGC 782
Query 799 ACAAACAATGGATCCTTGTAATTCATCTGTTGGTACTATTGCTTATATGAGTCCTGAGAG 858
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 783 TCAAACCATGGATCCTTGTAATTCATCTGTTGGAACTATTGCTTATATGAGTCCTGAGAG 842
Query 859 GATTAATACTGATTTGAATCATGGTCGTTACGATGGTTATGCTGGAGATGTTTGGAGTTT 918
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 843 GATTAACACTGATTTGAATCATGGTCGTTACGATGGTTACGCTGGAGATGTTTGGAGCTT 902
Query 919 AGGTGTTAGTATCTTGGAGTTTTACTTGGGGAGGTTTCCTTTTGCTGTGAGTAGACAAGG 978
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 903 AGGTGTTAGTATCTTGGAGTTTTACTTGGGGAGGTTTCCTTTTAATGTGAGTAGACAAGG 962
Query 979 TGATTGGGCTAGTCTTATGTGTGCTATTTGTATGTCTCAGCCACCTGAAGCTCCGGCT-A 1037
||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| | |
Sbjct 963 TGATTGGGCTAGTCTAATGTGTGCCATTTGTATGTCTCAGCCACCGGAAGCTCCGG-TGA 1021
Query 1038 CGGCGTCTCAGGAGTTTCGTCACTTTGTTTCTTGTTGTTTACAGAGTGATCCTCCTAAGA 1097
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1022 CGGCGTCTCAGGAGTTTCGTCACTTTGTTTCTTGTTGCTTACAGAGTGATCCTCCTAAGA 1081
Query 1098 GATGGTCAGCTCAACAGCTTTTGCAGCATCCTTTCATACTTAAAGCTACCGGTGGTCCTA 1157
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 1082 GATGGTCAGCTCAACAGCTTTTGCAGCATCCTTTCATACTTAAAGCAACTGGAGGTCCTA 1141
Query 1158 ATCTCCGTCAAATGTTGCCGCCGCCTCGTCCTCTTCCTTCTGCCTCTTAGTGtttctacc 1217
|||||||||||||||||||||||||||||||||||||||| || || ||| |||| ||||
Sbjct 1142 ATCTCCGTCAAATGTTGCCGCCGCCTCGTCCTCTTCCTTCGGCTTCCTAGGGTTTTTACC 1201
Query 1218 attttcgtctttcttgtttttcaatttttcgtagtttttcctgaca-tttttccataagt 1276
|||||||||||||||||||| | |||||||||| |||||||||||| |||||||| ||||
Sbjct 1202 ATTTTCGTCTTTCTTGTTTTCCGATTTTTCGTATTTTTTCCTGACAATTTTTCCACAAGT 1261
Query 1277 tttGCATACCCCAAGCAAAGATAATGAGAAGAGTAGAAGAACAATGTGGTTTGTGATTGG 1336
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1262 TTTGCATACCCCAAGCAAAGATAATGA-AAGAGTAGAA---CAATGTGGTTTGTGATTGG 1317
Query 1337 GGTATGAGTCGTCAGGAAGAAACTCAGTTTGTGGTTAGGGTTTATTGAGTCTTTATCTTA 1396
||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1318 GGTATGATTTGTCAGGAAGAAACTCAGTTTGTGGTTAGGGTTTATTGAGTCTTT--CTTA 1375
Query 1397 TGCTGCTAAGCTTGATTTGTCTTATGGGTAATGAAGAATGTTTTGCTAGAAATGGAAACa 1456
|| | | ||| || | || |||||||||||||||||||| |||||||||
Sbjct 1376 TGTT--T---CTT--TT-G------GG-TAATGAAGAATGTTTTGCTACAAATGGAAAGT 1420
Query 1457 aaaaaaTAGACAAGAAGAATTCTTATGGT 1485
|||| |||||||||||||||||||||
Sbjct 1421 AAAA----GACAAGAAGAATTCTTATGGT 1445
Score = 104 bits (56), Expect = 2e-21
Identities = 60/62 (97%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 1 GAAGCTTCATTCTCCTCTTGATTTGATCTCTTTGAAAAACGACGAATCAAACAAACCCTA 60
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 GAAGCTTCGTTCTCCTCTTGATTTGATCTCTTCGAAAAACGACGAATCAAACAAACCCTA 60
Query 61 GA 62
||
Sbjct 61 GA 62
> Ahg474280 jgi|Araly1|474280|fgenesh2_kg.1__4234__AT1G51660.1
Length=1527
Score = 780 bits (422), Expect = 0.0
Identities = 618/712 (87%), Gaps = 16/712 (2%)
Strand=Plus/Plus
Query 380 AACCGAATCGGAAGCGGAGCCGGAGGAACGGTTTACAAAGTAATCCACAC-TCCGACG-T 437
||||| |||||||||||||| || ||||||||||||||||| | ||| | ||||| | |
Sbjct 418 AACCGGATCGGAAGCGGAGCTGGTGGAACGGTTTACAAAGTGGTTCAC-CGTCCGA-GTT 475
Query 438 CACGTCCT-TTCGCTCTCAAAGTGATTTACGGAAACCACGAAGATACCGTGAGACGTCAG 496
| ||| || | ||| ||||| ||||| ||||| |||||||| || || ||||||||||||
Sbjct 476 CTCGT-CTATACGCACTCAAGGTGATATACGGTAACCACGAGGAGACAGTGAGACGTCAG 534
Query 497 ATCTGTAGAGAGATCGAGATCTTAAGAAG-TGTTG-ATCATCCAAACGTTGTGAAATGTC 554
|||||||||||||||||||| || | || || || ||||||||||||||||||||||||
Sbjct 535 ATCTGTAGAGAGATCGAGATTTTGCG-AGATG-TGAATCATCCAAACGTTGTGAAATGTC 592
Query 555 ACGATATGTTTGATCATAACGGTGAGATCCAGGTTTTGCTTGAGTTTATGGATCAAGGAT 614
|||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
Sbjct 593 ACGAGATGTTTGATCAGAACGGTGAGATCCAGGTTTTGCTTGAGTTTATGGATAAAGGTT 652
Query 615 CTCTT-GAAGGAGCTCATATATGGCAAGAACAGGAATTAGCTGATCTCTCTCGTCAGATT 673
|| || ||||| |||||| | ||| |||| || ||||||||||||| ||||||||||||
Sbjct 653 CT-TTAGAAGGTGCTCATGTGTGGAAAGAGCAACAATTAGCTGATCTATCTCGTCAGATT 711
Query 674 CTTAGTGGATTAGCTTATCTTCATCGTCGTCATATCGTTCATCGTGATATCAAACCTTCG 733
|||||||| ||||||||||| ||| | ||||| || |||||||||||||||||||| |||
Sbjct 712 CTTAGTGGTTTAGCTTATCTCCATAGCCGTCACATAGTTCATCGTGATATCAAACCATCG 771
Query 734 AATCTTCTT-ATAAACTCAGCTAAAAATGTGAAAATTGCTGATTTTGGTGTGAGTAGGAT 792
|||||| || |||||||| |||||||| || || ||||| |||||||| |||||||||||
Sbjct 772 AATCTT-TTGATAAACTCTGCTAAAAACGTTAAGATTGCAGATTTTGGAGTGAGTAGGAT 830
Query 793 CTTGGCACAAACAATGGATCCTTGTAATTCATCTGTTGGTACTATTGCTTATATGAGTCC 852
|||||| || || |||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 831 CTTGGCTCAGACTATGGATCCGTGTAATTCATCTGTTGGAACCATTGCTTATATGAGTCC 890
Query 853 TGAGAGGATTAATACTGATTTGAATCATGGTC-GTTACGATGGTTATGCTGGAGATGTTT 911
|||||||||||| |||||||||||||| ||| || | |||||||||||||| ||| |||
Sbjct 891 TGAGAGGATTAACACTGATTTGAATCAGGGTTTGT-ATGATGGTTATGCTGGTGATATTT 949
Query 912 GGAGTTTAGGTGTTAGTATCTTGGAGTTTTACTTGGGGAGGTTTCCTTTTGCTGTGAGTA 971
|||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 950 GGAGCTTAGGTGTTAGCATTTTGGAGTTTTACTTGGGGAGGTTTCCTTTCCCTGTGAGTA 1009
Query 972 GACAAGGTGATTGGGCTAGTCTTATGTGTGCTATTTGTATGTCTCAGCCACCTGAAGCTC 1031
|||||||||||||||| |||||||||||||| || |||||||||||||| || |||||||
Sbjct 1010 GACAAGGTGATTGGGCAAGTCTTATGTGTGCCATCTGTATGTCTCAGCCTCCGGAAGCTC 1069
Query 1032 CGGCTACGGCGTCTCAGGAGTTTCGTCACTTTGTTTCTTGTTGTTTACAGAG 1083
| |||| ||||| | |||||| || || ||| | || ||||| || |||||
Sbjct 1070 CACCTACCGCGTCGCCGGAGTTCCGGCATTTTATCTCGTGTTGCTTGCAGAG 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59763594405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5