BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21230.1
Length=1957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479643 jgi|Araly1|479643|fgenesh2_kg.3__2344__AT3G21230.1 2868 0.0
> Ahg479643 jgi|Araly1|479643|fgenesh2_kg.3__2344__AT3G21230.1
Length=1961
Score = 2868 bits (1553), Expect = 0.0
Identities = 1815/1941 (94%), Gaps = 20/1941 (1%)
Strand=Plus/Plus
Query 25 AGTAAAGAAGAATTAGAATCTCCACACAAATGGTGCTCCAACAACAAACGCATTTTCTCA 84
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 33 AGT-AAGAAGAATTAGAATATCCACACAAATGGTGCTCCAACAACAAACGCATTTTCTCA 91
Query 85 CAaagaagatagatcaagaagacgaagaagaagaaCCTTCTCATGATTTCATTTTCCGAT 144
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 92 CAAAGAAGATAGATCAAGAAGAAGAAGAAGAAGAACCTTCTCATGATTTCATTTTCCGAT 151
Query 145 CTAAGCTTCCTGATATCTTCATCCCTAACCACCTCCCTCTCACCGATTACGTCTTCCA-A 203
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 152 CTAAGCTTCCTGATATCTTCATCCCCAATCACCTCCCTCTCACCGATTACGTCTTCCACA 211
Query 204 AGGTTCTCCGGCGATGGCGACGGAGATTCCTCAACAACCTGTATCATCGACGGTGCCACT 263
| ||||||| |||||||||||| |||||||| || || |||||||| |||||||||||
Sbjct 212 A-ATTCTCCGCCGATGGCGACGGCGATTCCTCCACCACTTGTATCATTGACGGTGCCACA 270
Query 264 GGCCGTATTTTGACCTACGCCGATGTACAAACCAACATGCGGAGGATAGCTGCCGGAATC 323
|||||||| || ||||||||||||||||||| |||||||| |||||| ||||||||||||
Sbjct 271 GGCCGTATCTTAACCTACGCCGATGTACAAATCAACATGCAGAGGATTGCTGCCGGAATC 330
Query 324 CACCGGCTCGGGATCCGCCACGGAGACGTCGTAATGCTTCTCCTCCCGAACTCGCCGGAG 383
|||||| |||||||||||||||| |||||||||||||| || ||||||||||| ||||||
Sbjct 331 CACCGGTTCGGGATCCGCCACGGTGACGTCGTAATGCTCCTTCTCCCGAACTCACCGGAG 390
Query 384 TTTGCTCTGTCTTTTCTTGCCGTTGCTTACCTTGGAGCCGTTTCCACTACCGCGAATCCG 443
|||||| | ||||| || ||||| |||||||||||||| || ||||| ||||||||||||
Sbjct 391 TTTGCTTTATCTTTCCTCGCCGTGGCTTACCTTGGAGCTGTCTCCACCACCGCGAATCCG 450
Query 444 TTCTACACTCAGCCGGAGATCGCTAAACAGGCTAAAGCCTCCGCCGCGAAGATGATCATC 503
||||| || |||||||| || || ||||| || |||||||||||||||||||||||||||
Sbjct 451 TTCTATACGCAGCCGGAAATAGCAAAACAAGCAAAAGCCTCCGCCGCGAAGATGATCATC 510
Query 504 ACGAAGAAATGTTTAGTCGATAAACTAACAAACCTCAAAAACGACGGCGTTTTGATCGTT 563
||||||||||||||||| ||||| ||||||| ||| ||||||||||||||||| ||||||
Sbjct 511 ACGAAGAAATGTTTAGTAGATAAGCTAACAATCCTTAAAAACGACGGCGTTTTAATCGTT 570
Query 564 TGCCTAGACGATGACGGTGACAACGGCGTTGTTTCGTCGAGTGATGATGGTTGCGTGAGT 623
|| |||| |||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct 571 TGTGTAGATGATGACGGTG---ACGGCGTTGTTTCGCCGACTGATGATGGTTGCGTGAGT 627
Query 624 TTCACGGAACTGACTCAAGCGGACGAAACAGAACTT-CTAAAACCTAAAATATCGCCGGA 682
|| |||||||||||||||| ||||||||||| ||| || |||||| | || ||||||||
Sbjct 628 TTTACGGAACTGACTCAAGATGACGAAACAGAGCTTCCT-AAACCTGAGATCTCGCCGGA 686
Query 683 AGACACGGTGGCGATGCCGTACTCTTCCGGAACAACGGGACTTCCAAAGGGAGTGATGAT 742
||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 687 TGACACAGTGGCGATGCCGTACTCCTCCGGGACAACGGGACTGCCAAAGGGAGTGATGAT 746
Query 743 TACTCACAAGGGTTTAGTTACAAGCATCGCTCAGAAAGTCGACGGAGAAAACCCTAACCT 802
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 747 TACTCACAAGGGTTTGGTAACAAGCATCGCTCAGAAAGTCGACGGAGAAAACCCTAACC- 805
Query 803 TA-ACTTCACGGCCAATGACGTCATCCTCTGTTTTCTCCCAATGTTTCACATTTACGCTC 861
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 TACACTTCACGGCCAGTGACGTCATCCTCTGTTTTCTCCCAATGTTTCACATTTACGCTC 865
Query 862 TCGACGCGTTGATGCTTTCGGCGATGAGAACCGGTGCAGCGTTACTGATCGTGCCGAGGT 921
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 866 TCGACGCGTTAATGCTTTCGGCGATGAGAACCGGTGCGGCGTTACTGATCGTGCCTAGGT 925
Query 922 TCGAGTTGAATCTGGTGATGGAGCTGATTCAAAGGTACAAAGTCACGGTTGTGCCGGTGG 981
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 926 TCGAGTTGAATCTGGTGATGGAGCTGATTCAAAGGTACAAAGTCACGGTGGTTCCGGTGG 985
Query 982 CTCCTCCGGTGGTTTTAGCATTCA-TTAAATCCCCTGAGACGGAGAGATACGACTTGAGC 1040
|||||||||| ||| ||||||| | |||| ||||| || |||||||||||||||||||||
Sbjct 986 CTCCTCCGGTTGTTCTAGCATT-AGTTAAGTCCCCGGATACGGAGAGATACGACTTGAGC 1044
Query 1041 TCGGTGAGAATTATGCTATCAGGTGCAGCTACACTAAAGAAGGAGCTTGAAGACGCCGTG 1100
||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1045 TCGGTGAGAATGATGCTATCGGGTGCAGCTACATTAAAGAAGGAGCTTGAAGACGCCGTG 1104
Query 1101 CGACTCAAGTTTCCTAATGCCATTTTTGGTCAGGGTTATGGAATGACCGAGTCCGGAACG 1160
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1105 CGACTCAAGTTTCCTAATGCCATTTTTGGTCAGGGTTATGGTATGACCGAGTCCGGAACG 1164
Query 1161 GTAGCTAAGTCATTAGCGTTTGCAAAGAACCCATTTAAAACCAAGTCCGGTGCATGTGGG 1220
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1165 GTGGCTAAGTCATTAGCGTTTGCAAAGAACCCATTTAAAACCAAGTCCGGTGCGTGTGGG 1224
Query 1221 ACTGTGATCAGAAACGCCGAGATGAAAGTGGTCGATACCGA-AACCGGAATCTCCTTGCC 1279
||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| ||
Sbjct 1225 ACTGTGATCAGAAACGCCGAGATGAAAGTGGTCGATACC-ATAACCGGAATATCCTTACC 1283
Query 1280 GCGCAACAAATCTGGCGAGATCTGCGTCCGAGGTCATCAGCTCATGAAAGGTTATTTGAA 1339
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1284 GCGCAACAAATCTGGCGAGATCTGCGTCCGAGGCCATCAGCTCATGAAAGGTTATTTGAA 1343
Query 1340 TGATCCGGAAGCTACTGCACGAACCATAGACAAAGACGGGTGGTTACATACAGGAGATAT 1399
|||||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1344 TGATCCAGAATCTACTGCGCGAACCATAGACAAAGACGGGTGGTTACACACAGGAGATAT 1403
Query 1400 TGGGTTTGTGGATGATGATGATGAGATCTTCATTGTTGATCGGTTGAAGGAACTGATCAA 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 TGGGTTTGTGGATGATGATGATGAGATCTTCATTGTTGATCGGTTGAAGGAACTGATCAA 1463
Query 1460 ATTCAAAGGCTACCAAGTGGCTCCAGCTGAGCTTGAAGCATTGCTTATTTCTCATCCTTC 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 ATTCAAAGGCTACCAAGTGGCTCCAGCTGAGCTTGAAGCATTGCTTATTTCTCATCCTTC 1523
Query 1520 TATCGATGATGCCGCAGTTGTTGCAATGAAGGATGAAGTAGCTGATGAGGTTCCAGTAGC 1579
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1524 TATTGATGATGCCGCAGTTGTTGCAATGAAGGATGAAGTAGCTGATGAAGTTCCAGTAGC 1583
Query 1580 ATTTGTAGCAAGATCTCAAGGGTCTCAGTTAACTGAAGATGATGTCAAGAGTTACGTAAA 1639
|||||||| ||||||| |||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1584 ATTTGTAGTAAGATCTGAAGGGTCTCAGTTAACTGAAGAAGATGTCAAGAGTTATGTAAA 1643
Query 1640 CAAACAGGTGGTTCACTACAAGCGGATTAAGATGGTGTTTTTCATAGAAGTTATACCAAA 1699
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||
Sbjct 1644 CAAACAGGTGGTTCACTACAAGCGGATCAAGATGGTGTTTTTCATAGAAGCTATACCGAA 1703
Query 1700 AGCAGTTTCGGGCAAGATTCTGAGGAAGGATCTGCGAGCTAAATTGGAAACC-ATGTGCT 1758
||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 1704 AGCAGTTTCGGGCAAGATTCTGAGGAAGGATCTCCGAGCTAAATTGGAAACCGA-GTGCT 1762
Query 1759 CTAAATAGACACAAGAGAGTTTCAAATGTATGTGTAAATTCGAACATTATAGTCTCTAAG 1818
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1763 CTAAATAGACACAAGAGAGTTTCAATTGTATGTGTAAATTCGAACATTAAAGTCTCTAAG 1822
Query 1819 AAGTAAGGAGTAAGAAGCAAGTA-TTTGGTATTTGATTTGGTTTTCACGAGATCAATCAT 1877
||||||| |||||||||||||| |||||||||||||||||||| || || |||||||||
Sbjct 1823 AAGTAAGCAGTAAGAAGCAAGTTGTTTGGTATTTGATTTGGTTT-CAAGACATCAATCAT 1881
Query 1878 GTAAAGTCAACAAATCTAGGAAACCTAAAGCTA-AGCTACCCTCAGAAACATAAATTCAT 1936
||||| || ||| |||||||| ||||||||||| | |||||||||||||||||| |||||
Sbjct 1882 GTAAATTCTACACATCTAGGAGACCTAAAGCTATA-CTACCCTCAGAAACATAAGTTCAT 1940
Query 1937 TTCCTATAATCATCATTTCAC 1957
|||||||||||||||||||||
Sbjct 1941 TTCCTATAATCATCATTTCAC 1961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73552263095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5