BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21240.1
Length=1964
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905145 jgi|Araly1|905145|Al_scaffold_0003_2273 2390 0.0
Ahg923657 jgi|Araly1|923657|scaffold_104938.1 1360 0.0
> Ahg905145 jgi|Araly1|905145|Al_scaffold_0003_2273
Length=1620
Score = 2390 bits (1294), Expect = 0.0
Identities = 1522/1631 (93%), Gaps = 20/1631 (1%)
Strand=Plus/Plus
Query 112 AGT-GTAGTAATGACGTCATTTTCCGATCGAGATTGCCTGATATATACATCCCTAACCAC 170
||| |||||||||||||||||||||| |||| |||||| ||||| || ||||||||||||
Sbjct 4 AGTAGTAGTAATGACGTCATTTTCCGGTCGAAATTGCCGGATATTTATATCCCTAACCAC 63
Query 171 CTCCCACTCCACGACTACATCTTCGAAAATATCTCAGAGTTCGCCGCTAAGCCATGCTTG 230
|| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct 64 CTACCACTCCACGACTACATCTTCGAAAACATCTCTGAGTTCGCCGCTAAACCATGTTTG 123
Query 231 ATCAACGGTCCCACCGGCGAAGTATACACCTACGCCGATGTCCACGTAACATCTCGGAAA 290
|||||||||||||||||||| ||||||||||||||||| || |||| | ||| ||||||
Sbjct 124 ATCAACGGTCCCACCGGCGAGGTATACACCTACGCCGACGTACACGCCATATCGCGGAAA 183
Query 291 CTCGCCGCCGGTCTTCATAA-CCTCGGCGTGAAGCAACACGACGTTGTAATGATCCTCCT 349
||||||||||||||||| || |||||||||| ||||||||||| |||||| |||||||
Sbjct 184 CTCGCCGCCGGTCTTCA-AATAGTCGGCGTGAACCAACACGACGTCGTAATGCTCCTCCT 242
Query 350 CCCGAACTCTCCTGAAGTAGTCCTCACTTTCCTTGCCGCCTC-CTTCATCGGCGCAATCA 408
|||||||||||| |||||||||||||||||||| || || || | |||||||||||||||
Sbjct 243 CCCGAACTCTCCAGAAGTAGTCCTCACTTTCCTCGCAGCTTCAC-TCATCGGCGCAATCA 301
Query 409 CCACCTCCGCGAACCCGTTCTTCACTCCGGCGGAGATTTCTAAACAAGCCAAAGCCTCCG 468
|||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 302 CCACTTCAGCGAACCCGTTCTTCACTCCGGCGGAGATCTCTAAACAAGCCAAAGCCTCCG 361
Query 469 CGGCGAAACTCATCGTCACTCAATCCCGTTACGTCGATAAAATCAAGAACCTCCAAAACG 528
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 362 CCGCGAAACTCATCGTCACTCAATCTCGTTACTTCGATAAAATCAAGAACCTCCAAAACG 421
Query 529 ACGGCGTTTTGATCGTCACCACCGACTCCGACGCCATCCCCGAAAACTGCCTCCGTTTCT 588
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 422 ACGGCGTCTTGATCGTCACCACCGACTCCGACGTCATCCCCGAAAACTGCCTCCGCTTCT 481
Query 589 CCGAGTTAACTCAGTCCGAAGAACC-ACGAGTGGACTCAA-TACCGGAGAAGATTTCGCC 646
||||||| |||||||||| | ||| ||| | |||| | || | ||||||||||
Sbjct 482 CCGAGTTGACTCAGTCCGGCG-ACCTCCGA---G--TCAACT-CC---G-AGATTTCGCC 530
Query 647 AGAAGACGTCGTGGCGCTTCCTTTCTCATCCGGCACGACGGGTCTCCCCAAAGGAGTGAT 706
||| ||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||
Sbjct 531 AGACGACGTCGTGGCGCTTCCTTTCTCCTCTGGCACGACGGGTCTGCCCAAGGGAGTGAT 590
Query 707 GCTAACACACAAAGGTCTAGTCACGAGCGTGGCGCAGCAAGTCGACGGCGAGAATCCGAA 766
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 591 GCTAACACATAAAGGTCTCGTCACGAGCGTGGCGCAGCAAGTCGACGGCGAGAACCCAAA 650
Query 767 TCTTTACTTCAACAGAGACGACGTGATCCTCTGTGTCTTGCCTATGTTCCATATATACGC 826
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 651 TCTTTACTTCAACAGAGACGACGTGATCCTCTGTGTCTTGCCTATGTTCCATATCTACGC 710
Query 827 TCTCAACTCCATCATGCTCTGTAGTCTCAGAGTTGGTGCCACGATCTTGATAATGCCTAA 886
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 711 TCTTAACTCCATCATGCTCTGTAGTCTCAGAGTCGGTGCCACGATCTTGATAATGCCTAA 770
Query 887 GTTCGAAATCACTCTCTTGTTAGAGCAGATACAAAGGTGTAAAGTCACGGTGGCTATGGT 946
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 ATTCGAGATCACTCTCTTGTTAGAGCAGATACAAAGGTGTAAAGTCACGGTGGCTATGGT 830
Query 947 CGTGCCACCGATCGTTTTAGCTATCGCGAAGTCGCCGGAGACGGAGAAGTATGATCTGAG 1006
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 831 CGTGCCACCGATCGTTTTAGCTATTGCAAAGTCGCCGGAGACGGAGAAGTATGATCTGAG 890
Query 1007 CTCGGTTAGGATGGTTAAGTCTGGAGCAGCTCCTCTTGGTAAGGAGCTTGAAGATGCTAT 1066
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 891 TTCGGTTAGGATGGTTAAGTCTGGAGCAGCTCCTCTTGGTAAAGAACTTGAAGATGCTAT 950
Query 1067 TAGTGCTAAGTTTCCTAACGCCAAGCTTGGTCAGGGCTATGGGATGACAGAAGCAGGTCC 1126
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 951 TAGTGCTAAGTTTCCTAACGCCAAGCTTGGTCAGGGCTATGGGATGACAGAAGCGGGTCC 1010
Query 1127 GGTGCTAGCAATGTCGTTAGGGTTTGCTAAAGAGCCGTTTCCAGTGAAGTCAGGAGCATG 1186
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1011 GGTGCTAGCAATGTCGTTAGGGTTTGCTAAAGAGCCGTTTCCAGTGAAATCAGGAGCATG 1070
Query 1187 TGGTACGGTGGTGAGGAACGCCGAGATGAAGATACTTGATCCAGACACAGGAGATTCTTT 1246
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1071 TGGTACAGTGGTGAGGAACGCCGAGATGAAGATACTTGATCCAGACACCGGAGATTCCTT 1130
Query 1247 GCCTAGGAA-CAAACCCGGCGAAATATGCATCCGTGGCAACCAAATCATGAAAGGCTATC 1305
||||||||| ||| || |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1131 GCCTAGGAATCAAGCC-GGCGAAATCTGCATTCGTGGCAACCAAATCATGAAAGGCTATC 1189
Query 1306 TCAATGACCCCTTGGCCACGGCATCGACGATCGATAAAGATGGTTGGCTTCACACTGGAG 1365
||||||| || |||| || |||||||||||||||||||| |||||||||||||| ||||
Sbjct 1190 TCAATGATCCGGTGGCTACCGCATCGACGATCGATAAAGACGGTTGGCTTCACACAGGAG 1249
Query 1366 ACGTCGGATTTATCGATGATGACGACGAGCTTTTCATTGTGGATAGATTGAAAGAACTCA 1425
|||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1250 ACGTTGGATTCATCGATGACGACGACGAGCTTTTCATTGTCGATAGATTGAAAGAACTCA 1309
Query 1426 TCAAGTACAAAGGATTTCAAGTGGCTCCAGCTGAGCTAGAGTCTCTCCTCATAGGTCATC 1485
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1310 TCAAGTACAAAGGATTTCAAGTGGCTCCAGCTGAGCTAGAGTCTCTCCTCATAGGTCACC 1369
Query 1486 CAGAAATCAATGATGTTGCTGTCGTCGCCATGAAGGAAGAAGATGCTGGTGAGGTTCCTG 1545
| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1370 CTGAAATCAATGATGTTGCTGTCGTCGCAATGAAAGAAGAAGATGCTGGTGAGGTTCCTG 1429
Query 1546 TTGCGTTTGTGGTGAGATCGAAAGATTCAAATATATCCGAAGATGAAATCAAGCAATTCG 1605
| ||||||||||||||| ||||||| || |||||||||||||||||||||||| ||||||
Sbjct 1430 TGGCGTTTGTGGTGAGAACGAAAGAGTCGAATATATCCGAAGATGAAATCAAGGAATTCG 1489
Query 1606 TGTCAAAACAGGTTGTGTTTTATAAGAGAATCAACAAAGTGTTCTTCACTGACTCTATTC 1665
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1490 TGTCAAAACAGGTTGTGTTTTATAAGAGGATCAATAAAGTGTTCTTCACTGACTCTATTC 1549
Query 1666 CTAAAGCTCCATCAGGGAAGATATTGAGGAAGGATCTAAGAGCAAGACTAGCAAATGGAT 1725
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 CAAAAGCTCCATCAGGGAAGATATTGAGGAAGGATCTAAGAGCAAGACTAGCAAATGGAT 1609
Query 1726 TAATGAACTAG 1736
|||||||||||
Sbjct 1610 TAATGAACTAG 1620
> Ahg923657 jgi|Araly1|923657|scaffold_104938.1
Length=1714
Score = 1360 bits (736), Expect = 0.0
Identities = 1353/1644 (82%), Gaps = 69/1644 (4%)
Strand=Plus/Plus
Query 122 TGACGTCATTTTCCGATCGAGA-TTGCCTGATATATACATCCCTAACCACCTCCCACTCC 180
|||||||||||||||||| | | | || ||||| |||||||| ||||||||| | ||||
Sbjct 71 TGACGTCATTTTCCGATC-AAAGCTACCGGATATTTACATCCCAAACCACCTCTCTCTCC 129
Query 181 ACGACTACATCTTCGAAAATATCTCAGAGTTCGCCGCTAAGCCATGCTTGATCAACGGTC 240
|||||||||||||| |||| ||||| || |||||| | ||||| ||| | |||||||| |
Sbjct 130 ACGACTACATCTTCCAAAACATCTCCGAATTCGCCACCAAGCCTTGCCTAATCAACGGAC 189
Query 241 CCACCGG-CGAAGTATACACCTACGCCGATGTCCACGTAACATCT--CG--GAAACTCGC 295
| ||||| | | || ||||| ||| | || |||||||| ||||| || | || ||||
Sbjct 190 CAACCGGAC-ACGTGTACACTTACTCAGACGTCCACGT--CATCTCCCGCCG-AA-TCGC 244
Query 296 CGCCGGTCTTCATAACCTCGGCGTGAAGCAACACGACGTTGTAATGATCCTCCTCCCGAA 355
||||||| |||| || |||||||| || ||| ||||||| || ||| |||||||||| ||
Sbjct 245 CGCCGGTTTTCACAAACTCGGCGTTAACCAAAACGACGTCGTCATGCTCCTCCTCCCAAA 304
Query 356 CT-CTCCTGAAGTAGTCCTCACTTTCCTTGCCGCCTCCTTCATCGGCGCAATCACCACCT 414
|| | || ||| | |||||| ||||||| ||||| || ||| |||||||||| |||||
Sbjct 305 CTGC-CCCGAATTCGTCCTCTCTTTCCTCGCCGCTTCTTTCCGCGGCGCAATCGCCACCG 363
Query 415 CCGCGAACCCGTTCTTCACTCCGGCGGAGATTTCTAAACAAGCCAAAGCCTCC-GCGGCG 473
||||||| || |||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 364 CCGCGAATCCATTCTTCACTCCGGCGGAGATCGCTAAACAAGCCAAAGCCTCCAAC-TCC 422
Query 474 AAACTCATCGTCACTC-AATCCCGTTACGTCGATAAAATCAAGA-ACCTCC-AAA--ACG 528
||||||||| |||| | |||| || |||||||| |||||||| | ||||| ||| |||
Sbjct 423 AAACTCATCATCAC-CGAATCTCGCTACGTCGACAAAATCAA-ATCCCTCCAAAAGGACG 480
Query 529 AC-G-G-CG-T-T--T-TG-ATCGTC-ACCACCGACTCCGACGCC-ATCCCCGAAAACTG 577
|| | | || | | | || |||| | | || ||| |||| | || ||||| || |||
Sbjct 481 ACGGAGTCGTTATCGTCTGCATCGACGA-CAACGAATCCGTC-CCTATCCCTGACGGCTG 538
Query 578 CCTCCG-TTTCTCCGAGTTAACTCAGTCCGAAGAACCACGAG---T-GGAC-TCAAT--A 629
|||||| ||| |||| || ||||||| | || || | |||| | ||| | ||| |
Sbjct 539 CCTCCGATTT-ACCGAATTGACTCAGT-C-AACAA-C-CGAGTCATCAGACGT-AATCGA 592
Query 630 C-CGG-AGAAGATTTCGCCAGAAGACGTCGTGGCGCTTCCTTTCTCATCCGGCACGACGG 687
| ||| | ||||||| || || ||||| ||||||||||||| ||| |||||||||||||
Sbjct 593 CTCGGTTG-AGATTTCACCGGACGACGTGGTGGCGCTTCCTTACTCCTCCGGCACGACGG 651
Query 688 GTCTCCCCAAAGGAGTGATGCTAACACACAAAGGTCTAGTCACGAGCGTGGCGCAGCAAG 747
| || ||||||||||||||||| ||||||||||| |||||||||||||| || |||||||
Sbjct 652 GACTACCCAAAGGAGTGATGCTGACACACAAAGGACTAGTCACGAGCGTTGCTCAGCAAG 711
Query 748 TCGACGGCGAGAATCCGAATCTTTACTTCAACAGAGACGACGTGATCCTCTGTGTCTTGC 807
||||||||||||| ||||||||||| ||| |||| || ||||| || |||||||| ||||
Sbjct 712 TCGACGGCGAGAACCCGAATCTTTATTTCCACAGCGATGACGTCATACTCTGTGTTTTGC 771
Query 808 CTATGTTCCATATATACGCTCTCAACTCCATCATGCTCTGTAGTC-TCAGAGTTGGTGCC 866
| ||||| ||||| |||||| | ||||| |||||| | ||| ||| || ||||||||||
Sbjct 772 CCATGTTTCATATCTACGCTTTGAACTCGATCATGTTGTGTGGTCTTC-GAGTTGGTGCT 830
Query 867 ACGA-TCTTGATAATGCCTAAGTTCGAAATCACTCT-CTTGTTAGAGCAGATACAAAGGT 924
||| || ||||||||||||| || || || | ||| ||| || |||| ||| || ||||
Sbjct 831 GCGATTC-TGATAATGCCTAAATTTGAGATTAATCTGCTT-TTGGAGCTGATTCAGAGGT 888
Query 925 GTAAAGTCACGGTGGCTATGGTCGTGCCACCGATCGTTTTAGCTATCGCGAAGTCGCCGG 984
||||||| ||||||||| | | || || ||||| || || || || |||||||||||||
Sbjct 889 GTAAAGTGACGGTGGCTCCGATGGTTCCGCCGATTGTGTTGGCCATTGCGAAGTCGCCGG 948
Query 985 AGACGGAGAAGTATGATCTGAGCTCGGTTAG-GATGGTTAAGTCTGGAGCAGCTCCTCTT 1043
||||||||||||||||| |||| || | || | |||| || || || || |||||||||
Sbjct 949 AGACGGAGAAGTATGATTTGAGTTCAATAAGAG-TGGTGAAATCAGGTGCTGCTCCTCTT 1007
Query 1044 GGTAAGGAGCTTGAAGATGCTATTAGTGCTAAGTTTCCTAACGCCAAGCTTGGTCAGGGC 1103
||||| |||||||||||||| ||||||| ||||||||||| ||||| || ||||||||
Sbjct 1008 GGTAAAGAGCTTGAAGATGCCGTTAGTGCCAAGTTTCCTAATGCCAAACTCGGTCAGGGA 1067
Query 1104 TATGGGATGACAGAAGCAGGTCCGGTGCTAGCAATGTCGTTAGGGTTTGCTAAAGAGCCG 1163
|| || ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 1068 TACGGAATGACAGAAGCAGGTCCAGTGCTAGCAATGTCGTTAGGTTTTGCAAAAGAGCCG 1127
Query 1164 TTTCCAGTGAAGTCAGGAGCATGTGGTACGGTGGTGAGGAACGCCGAGATGAAGATACTT 1223
|| || ||||| |||||||| |||||||||||||| || |||||||||||||| ||| ||
Sbjct 1128 TTCCCGGTGAAATCAGGAGCTTGTGGTACGGTGGTAAGAAACGCCGAGATGAAAATAGTT 1187
Query 1224 GATCCAGACACAGGAGATTCT-TTGCCTAGGAA-CAAACCCGGCGAAATATGCATCCGTG 1281
||||||||||| ||||||||| || | ||||| || ||||| || |||||||||||||
Sbjct 1188 GATCCAGACACCGGAGATTCTCTTTCG-AGGAATCAG-CCCGGTGAGATATGCATCCGTG 1245
Query 1282 G-CAACCAAATCATGAAAGGCTATCTCAATGACCCCTTGGCCACGGCATCGACGATCGAT 1340
| || ||||||||||||||| || ||||| | || || || ||| ||| || |||
Sbjct 1246 GTCA-CCAAATCATGAAAGGTTACCTCAACAATCCGGCAGCTACAGCAGAGACCATTGAT 1304
Query 1341 AAAGATGGTTGGCTTCACACTGGAGACGTCGGATTTATCGATGATGACGACGAGCTTTTC 1400
|||||||||||||||||||||||||| | ||||| |||||||| || ||||||||||||
Sbjct 1305 AAAGATGGTTGGCTTCACACTGGAGATATTGGATTGATCGATGACGATGACGAGCTTTTC 1364
Query 1401 ATTGTGGATAGATTGAAAGAACTCATCAAGTACAAAGGATTTCAAGTGGCTCCAGCTGAG 1460
|| || ||| ||||||||||||| |||||||| ||||| ||||| || ||||||||||||
Sbjct 1365 ATCGTTGATCGATTGAAAGAACTTATCAAGTATAAAGGTTTTCAGGTAGCTCCAGCTGAG 1424
Query 1461 CTAGAGTCTCTCCTCATAGGTCATCCAGAAATCAATGATGTTGCTGTCGTCGCCATGAAG 1520
|||||| || | ||||| |||||||| || || | |||||||||||| ||||| |||||
Sbjct 1425 CTAGAGGCTTTGCTCATCGGTCATCCCGACATTACTGATGTTGCTGTTGTCGCAATGAAA 1484
Query 1521 GAAGAAGATGCTGGTGAGGTTCCTGTTGCGTTTGTGGTGAGATCGAAAGATTCAAA-TAT 1579
||||||| ||||||||| ||||| ||||| |||||||||| |||||| |||||| | | |
Sbjct 1485 GAAGAAGCTGCTGGTGAAGTTCCAGTTGCATTTGTGGTGAAATCGAAGGATTCAGAGT-T 1543
Query 1580 ATCCGAAGATGAAATCAAGCAATTCGTGTCAAAACAGGTTGTGTTTTATAAGAGAATCAA 1639
||| |||||||| | |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1544 ATCAGAAGATGATGTGAAGCAATTCGTGTCGAAACAGGTTGTGTTTTACAAGAGAATCAA 1603
Query 1640 CAAAGTGTTCTTCACTGACTCTATTCCTAAAGCTCCATCAGGGAAGATATTGAGGAAGGA 1699
||||||||| |||||||| || |||||||||||||||||||||||||| |||||||| ||
Sbjct 1604 CAAAGTGTTTTTCACTGAATCCATTCCTAAAGCTCCATCAGGGAAGATTTTGAGGAAAGA 1663
Query 1700 TCTAAGAGCAAGACTAGCAAATGG 1723
||| || |||| ||||||||||||
Sbjct 1664 TCTGAGGGCAAAACTAGCAAATGG 1687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73818894810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5