BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21270.1
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930083 jgi|Araly1|930083|scaffold_302540.1 931 0.0
Ahg474287 jgi|Araly1|474287|fgenesh2_kg.1__4241__AT1G51700.1 244 8e-64
> Ahg930083 jgi|Araly1|930083|scaffold_302540.1
Length=644
Score = 931 bits (504), Expect = 0.0
Identities = 613/662 (93%), Gaps = 21/662 (3%)
Strand=Plus/Plus
Query 232 TTTTTGAATAAAGGTTGAAGAAAAATGCAGGATCCAGCAGCATATTACCAGACGATGATG 291
|||||||| || | | ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 TTTTTGAAGAACGATCGAAGAAAAATGCAGGATCCAGCAGCTTATTACCAGACGATGATG 60
Query 292 GCGAAGcaacaacaacaacaacaacCACAGTTTGCAGAGCAAGAACAGTTAAAGTGTCCT 351
|| | | ||||||||| | | || | |||||||||||||||||| |||||||||||
Sbjct 61 GC---G--A-AACAACAAC--C-A-CA-A-TTTGCAGAGCAAGAACAGCTAAAGTGTCCT 108
Query 352 CGTTGTGACTCACCAAACACTAAATTCTGTTACTACAACAACTACAATCTCTCACAGCCT 411
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 CGTTGTGACTCACCCAACACTAAATTCTGTTACTACAACAACTACAATCTCTCACAGCCT 168
Query 412 CGTCACTTTTGCAAAAGCTGTCGTCGTTACTGGACTAAAGGCGGCGCTCTCCGTAACGTT 471
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 169 CGTCACTTTTGCAAAAGCTGCCGTCGTTACTGGACTAAAGGCGGCGCTCTCCGTAACGTC 228
Query 472 CCCGTCGGTGGTGGTTCTCGTAAGAACGCAACCAAACGATCCActtcttcttcttcttc- 530
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 229 CCCGTCGGTGGTGGTTCTCGCAAGAACGCAACCAAACGTTCCACTTCTTCTTCTTCTTCA 288
Query 531 tgcttcct-ctccttcCAACAGTAGCCAAAACAAGAAGACGAAAAACCCGGATCCGGATC 589
| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 T-CTT-CTCCTCCTTCCAACAGTAGCCAAAACAAGAAGACGAAAAACCCGGATCCGGATC 346
Query 590 CTGATCCACGTAATTCTCAAAAACCGGATTTGGATCCGACCCGGATGCTTTACGGGTTTC 649
|||||||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 347 CTGATCCACGTAATTCACAAAACCCGGATATAGATCCGACCCGGATGCTTTACGGGTTTC 406
Query 650 CGATCGGTGACCAAGACGTGAAGGGTATGGAGATTGGTGGAAGCTTTAGCTCGTTGTTGG 709
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 407 CGATCGGAGACCAAGACGTTAAAGGTATGGAGATTGGTGGAAGCTTTAGCTCGTTGTTGG 466
Query 710 CGAATAATATGCAGCTTGGTCTTGGAGGAGGAGGGATCATGCTTGACGGGTCGGGTTGGG 769
|| ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 467 CGTCTAATATGCAGCTTGGTCTTGGAGGAGG-G--ATCATGCTTGATGGGTCGGGTTGGG 523
Query 770 ATCATCCGGGTATGGGTTTGGGTTTGAGGAGAACCGAACCGGGTAATAATAATAATAACC 829
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 524 ATCATCCGGGTATGGGTTTGGGTTTGAGAAGGACCGAACCGGGTAATAATAATAATAACC 583
Query 830 CATGGACCGATCTGGCTATGAACAGAGCGGAGAAAAACTGAAGAAGA-AAAGAAGAGAGG 888
| ||||| ||||| ||||||||||||| ||||||||||||||||| | ||| ||||||||
Sbjct 584 CGTGGACTGATCTTGCTATGAACAGAGTGGAGAAAAACTGAAGAA-ACAAATAAGAGAGG 642
Query 889 GG 890
||
Sbjct 643 GG 644
> Ahg474287 jgi|Araly1|474287|fgenesh2_kg.1__4241__AT1G51700.1
Length=757
Score = 244 bits (132), Expect = 8e-64
Identities = 195/225 (87%), Gaps = 5/225 (2%)
Strand=Plus/Plus
Query 313 caacCACAGTTTGCAGAGCAAGAACAGTTAAAGTGTCCTCGTTGTGACTCACCAAACACT 372
|||||| |||| |||| ||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct 218 CAACCAGAGTTACCAGAACAAGAACAGCTAAAGTGTCCTCGCTGTGACTCACCCAACACT 277
Query 373 AAATTCTGTTACTACAACAACTACAATCTCTCACAGCCTCGTCACTTTTGCAAAAGCTGT 432
|||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||
Sbjct 278 AAATTCTGTTACTACAACAATTATAATCTGTCACAGCCCCGTCACTTTTGCAAAAGCTGT 337
Query 433 CGTCGTTACTGGACTAAAGGCGGCGCTCTCCGTAACGTTCCCGTCGGTGGTGGT-TCTCG 491
||||||||||||||||||||||| ||||| |||||| | |||||||||||||| | |||
Sbjct 338 CGTCGTTACTGGACTAAAGGCGGTGCTCTTCGTAACATCCCCGTCGGTGGTGGAAT-TCG 396
Query 492 TAAGAACGCAACCAAACGATCCActtcttcttcttcttctgcttc 536
|| ||| ||| |||||||| ||| || || |||||| ||||
Sbjct 397 AAAAAAC--AAC-AAACGATCTGGTTCGTCATCGTCTTCTTCTTC 438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40181554518
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5