BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21280.1
Length=1811
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479647 jgi|Araly1|479647|fgenesh2_kg.3__2348__AT3G21280.1 2615 0.0
Ahg923661 jgi|Araly1|923661|scaffold_104942.1 1476 0.0
> Ahg479647 jgi|Araly1|479647|fgenesh2_kg.3__2348__AT3G21280.1
Length=1793
Score = 2615 bits (1416), Expect = 0.0
Identities = 1668/1786 (93%), Gaps = 31/1786 (2%)
Strand=Plus/Plus
Query 43 AAACCCGACCCGAATCAACCCGGATCGACCCACCCGGTTCGGATACTGGC--ATATA-TA 99
||||||||||||| | ||||||| ||||||||||||||||| || |||| || || ||
Sbjct 22 AAACCCGACCCGACTAAACCCGGCCCGACCCACCCGGTTCGGGTATTGGCGTATTTATTA 81
Query 100 GAGACGAAGAAAGAAGAAGAAGGCAAGttttttttttttGATATAGCTTGCCTTGGCTTC 159
|||||||| |||||||||||||||| ||||| ||| || | | |||||||| ||||
Sbjct 82 GAGACGAATTCAGAAGAAGAAGGCAAG---TTTTTATTT-ATTTCGTTTGCCTTGTCTTC 137
Query 160 AAGAAAGAAATCAATCTCGTTTCTCTTCAG-CATCAAACAATGTTAACAGTGAGCGTGAA 218
|||||| |||||||||||||||||||| | |||| ||||||||||||||||||||||||
Sbjct 138 AAGAAATCAATCAATCTCGTTTCTCTTC-GTCATCGAACAATGTTAACAGTGAGCGTGAA 196
Query 219 GTGGCAAAAGAAGGTGTTTGAGAGTATCGAGATTGATACTAGCCAGCCTCCTTTTGTTTT 278
||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| ||
Sbjct 197 GTGGCAAAAGAAGGTGTTTGAGAGTATGGAGATTGATACTCTCCAGCCTCCTTATGTATT 256
Query 279 CAAGGCTCAGTTGTATGATTTGAGTGGAGTTCCGCCTGAGCGGCAAAAGATCATGGTCAA 338
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 257 CAAGGCTCAGTTGTATGATTTGAGTGGAGTACCGCCTGAGCGGCAAAAGATCATGGTCAA 316
Query 339 AGGTGGCCTTTTGAAGGATGATGCAGATTGGTCTACGTTGGGACTGAAAAATGGTCAAAA 398
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 317 AGGTGGACTTTTGAAGGATGATGCAGATTGGTCTACGTTGGGACTCAAAAATGGTCAAAA 376
Query 399 ATTGATGATGATGGGAACTGCAGATGAAATAGTGAAGGCTCCAGAGAAGGGTCCTGTTTT 458
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 377 ATTGATGATGATGGGAACTGCAGATGAAATAGTCAAGGCTCCAGAGAAGGGTCCTGTTTT 436
Query 459 TATGGAGGATCTTCCTGAAGAACAGCAGGCTGCTAATCTGGGCTACAGTGCTGGCCTAGT 518
|||||||||||||||||| || | || || ||||||||||| |||||||||||||||||
Sbjct 437 TATGGAGGATCTTCCTGAGGAGGAACAAGCCGCTAATCTGGGTTACAGTGCTGGCCTAGT 496
Query 519 CAATCTTGGAAACACCTGTTACATGAACTCAACGATGCAGTGTTTAATATCTGTCCCAGA 578
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 497 CAATCTTGGAAACACCTGCTACATGAACTCAACGATGCAGTGTTTAAAATCTGTCCCAGA 556
Query 579 GTTGAAATCTGAATTATCCAATTACCAATCTGCTCGAACCAAGGATGTGGATCAGACTTC 638
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 557 GTTGAAATCTGAATTATCCAATTACCAATCTGCTCGAACCAAGGATGTTGATCAGACTTC 616
Query 639 TCACATGCTCACTGTTGCAACACGTGAGTTATTTAGTGAGCTTGATAAAAGTGTCAAGGC 698
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 617 TCACATGCTCACAGTTGCAACACGTGAGTTATTTAGAGAGCTTGATAAAAGTGTCAAGGC 676
Query 699 TGTTGCGCCTATGCCGTTCTGGATGGTGTTACaaaaaaaaTATCCTCAGTTTGCTCAGTT 758
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 TGTTGCGCCTATGCCATTCTGGATGGTGTTACAAAAAAAATATCCTCAGTTTGCTCAGTT 736
Query 759 GCATAACGGAAATCACATGCAACAGGATGCTGAAGAATGTTGGACACAAATGTTGTACAC 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 GCATAACGGAAATCACATGCAACAGGATGCTGAAGAATGTTGGACACAAATGTTGTACAC 796
Query 819 TCTTTCCCAGTCCCTAAAACTGCCATCGCCTAGTGAAGATCCTGATGCTGTGAAGGCTCT 878
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 797 TCTTTCCCAGTCCCTAAAACCGCCATCGCCTACCGAAGATCCTGATGCTGTGAAGGCTCT 856
Query 879 TTTTGGTCTCAACCTTC-TAAACAGGTTGCATTGCCAAGAAAGTAGCGAAGAAAGCTCAG 937
||||||||||||||||| | | |||||||||||||||||||||||| ||||||||||| |
Sbjct 857 TTTTGGTCTCAACCTTCGT-AGCAGGTTGCATTGCCAAGAAAGTAGTGAAGAAAGCTCGG 915
Query 938 AGACAGAATCTGTCTTTTCTCTGAAATGTCACATATCACATGAGGTGAACCACTTGCATG 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 AGACAGAATCTGTCTTTTCTCTGAAATGTCACATATCACATGAGGTGAACCACTTGCATG 975
Query 998 AAGGATTAAAACATGGACTGAAAGGAGAACTTGAAAAAACATCTCCTTCTCTGGGTCGTA 1057
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 976 AAGGATTAAAACATGGACTGAAAGGAGAACTTGAAAAAACATCTCCTGCTCTGGGTCGTA 1035
Query 1058 CAGCGGTTTACGTAAAGGAGTCTCTTATAGATTCATTGCCAAGGTACTTGACTGTTCAGT 1117
||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1036 CAGCGGTTTACATTAAGGAGTCTCTTATAGATTCGTTGCCAAGGTACTTGACTGTTCAGT 1095
Query 1118 TTGTGAGATTCTTCTGGAAACGGGAGAGTAATCAGAAAGCAAAAATTCTCCGGAAAGTGG 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 TTGTGAGATTCTTCTGGAAACGGGAGAGTAATCAGAAAGCAAAAATTCTCCGGAAAGTGG 1155
Query 1178 ATTATCCGTTGGAGTTGGATATATATGACCTTTGTTCTGAGGATCTTCGAAAGAAACTGG 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 ATTATCCGTTGGAGTTGGATATATATGACCTTTGTTCTGAGGATCTTCGAAAGAAACTGG 1215
Query 1238 AAGCTCCTCGACAGAAACTGAGAGATATTGAAGGTCAAAAGCTTGGTCTGCAAGCCAGTG 1297
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 AAGCTCCTCGCCAGAAACTGAGAGATATTGAAGGTCAAAAGCTTGGTCTGCAAGCCAGTG 1275
Query 1298 CAAAGAGCAGCTCAAAGGGTGATGATGTGAAAATGACTGATGCTGAGGGATCATCAAACC 1357
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1276 CAAAGAGCAGCTCAAAGGGCGATGATGTGAAAATGACTGATGCTGAGGAATCATCAAACG 1335
Query 1358 AAAGTGGCGAATCATCAACTGGTGACCAACA-GGAAGGTGCTTCGCCTCACATGACCGGA 1416
|||||| || ||||| | ||||||||||| ||| ||||||||| ||||||||||||||
Sbjct 1336 GAAGTGGTGAGTCATCCTCCGGTGACCAACATGGA-GGTGCTTCGTCTCACATGACCGGA 1394
Query 1417 ATTTATGACCTGGTATCGGTGTTGACCCACAAAGGCAGAAGCGCAGACTCTGGGCATTAT 1476
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 ATTTATGACCTGGTCTCAGTGTTGACCCACAAAGGCAGAAGCGCAGACTCTGGGCATTAT 1454
Query 1477 GTTGCATGGGTCAAGCAAGAGAGTGGTAAGTGGGTTCAATACGACGATGCCAACACTAGT 1536
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1455 GTTTCATGGGTCAAGCAAGAGAGTGGTAAGTGGGTTCAATACGACGATGCTAACACGAGC 1514
Query 1537 CTTCAACGGGGAGAAGATATCATTAAACTCTCTGGAGGAGGTGATTGGCATATGGCATAC 1596
|||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1515 CTTCAACGGGAAGAGGATATCACTAAACTCTCTGGAGGAGGTGATTGGCATATGGCATAC 1574
Query 1597 ATCGTAATGTACAAGGCCCGTCTCATCTCCATGTAATCGAATCT-CTCCTTTTTTATTTT 1655
|||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||| |
Sbjct 1575 ATCGTAATGTACAAGGCCCGTCTCATCTCCATGTAATC---TCTTCTC-TTTTC-ATTAT 1629
Query 1656 CTCAGTTCTTGAAACATTTAGATCGTTTAATCTTTTCTCAGT-T---C--T-T-CATGCT 1707
||||||||||||||||||||||||| |||| ||||| | || | | | | ||||||
Sbjct 1630 CTCAGTTCTTGAAACATTTAGATCGCTTAAGCTTTTTTTTGTATAGACCATCTTCATGCT 1689
Query 1708 CCTCTTTATAGAA-TTTCCATATTATTTTTTGTTGTTGTCATTAAAATGTTATAAATCAG 1766
||||||| ||||| |||| | ||||||||||||||| ||||||||||||||||||| |||
Sbjct 1690 CCTCTTTGTAGAAATTTC-ACATTATTTTTTGTTGTCGTCATTAAAATGTTATAAACCAG 1748
Query 1767 AAAACTATAAAGAAAAAAG-TGTGTTTTTGTAGAGGTCCCAATCTG 1811
||||||| ||| |||| ||| ||||| ||||||||||||||||
Sbjct 1749 AAAACTA-AAATAAAAGTTCTGTTTTTTTTTAGAGGTCCCAATCTG 1793
> Ahg923661 jgi|Araly1|923661|scaffold_104942.1
Length=1491
Score = 1476 bits (799), Expect = 0.0
Identities = 1250/1462 (85%), Gaps = 53/1462 (4%)
Strand=Plus/Plus
Query 207 AGTGAGCGTGAAGTGGCAAAAGAAGGTGTTTGA-GAGTATCGAGATTGATACTAGCCAGC 265
||| |||||||||||||||||||| |||||||| | |||||||||| || ||||| | ||
Sbjct 31 AGTAAGCGTGAAGTGGCAAAAGAATGTGTTTGATG-GTATCGAGATCGACACTAGTCTGC 89
Query 266 CTCCTTTTGTTTTCAAGGCTCAGTTGTATGATTTGAGTGGAGTTCCGCCTGAGCGGCAAA 325
|||||||||||||||| ||||| ||||||||||||| ||||||||| ||||| || ||||
Sbjct 90 CTCCTTTTGTTTTCAAAGCTCATTTGTATGATTTGACTGGAGTTCCTCCTGAACGCCAAA 149
Query 326 AGATCATGGTCAAAGGTGGCCTTTTGAAGGATGATGCAGATTGGTCTACGT-TGGGACTG 384
||||||||||||||||||| || || |||||||||| |||||||||| | | | ||| ||
Sbjct 150 AGATCATGGTCAAAGGTGGTCTCTTAAAGGATGATGGAGATTGGTCTGC-TATTGGATTG 208
Query 385 AAA-AATGGTCAAAAATTGATGATGATGGGAACTGCAGATGAAATAGTGAAGGCTCCAGA 443
||| || ||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||
Sbjct 209 AAAGAA-GGTCAAAAATTGATGATGATGGGAACTGCTGATGAAATTGTGAAAGCTCCTGA 267
Query 444 GAAGGGTCC-T-GTTTTTATGGAGGATCTT-CCTGAAGAA-CAGCAGGCTGCTAATCTGG 499
|||| || | |||||| ||||||| || ||||||||| | ||| || |||||||||
Sbjct 268 AAAGG--CCATTGTTTTTGCGGAGGAT-TTACCTGAAGAAGC-GCAAGCCACTAATCTGG 323
Query 500 GCTACAGTGCTGGCCTAGTCAATCTTGGAAACACCTGTTACATGAACTCAACGATGCAGT 559
| ||||||||||| || ||||||||||| ||||| |||||||||||||| ||| ||||||
Sbjct 324 GTTACAGTGCTGGTCTTGTCAATCTTGGCAACACGTGTTACATGAACTCCACGGTGCAGT 383
Query 560 GTTTAATATCTGTCCCAGAGTTGAAATCTGAATTATCCAATTAC-CAAT--CTGCTCGAA 616
| |||| ||||||||||||||||||||||| |||||| |||||| || | |||| ||||
Sbjct 384 GCTTAAAATCTGTCCCAGAGTTGAAATCTGCATTATCTAATTACTCACTTGCTGCACGAA 443
Query 617 CCAAGGATGTGGATCAGACTTCTCACATGCTCACTGTTGCAACACGTGAGTTATTTAGTG 676
||| ||||| || |||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 444 GCAATGATGTCGACCAGACTTCTCACATGCTCACAGTTGCCACACGTGAGTTATTCGGTG 503
Query 677 AGCTTGATAAAAGTGTCAAGGCTGTTGCGCCTATGCCGTTCTGGATGGTGTTACaaaaaa 736
||||||||| ||||||||| |||||| |||||| | |||||||||||| |||| |||||
Sbjct 504 AGCTTGATAGAAGTGTCAATGCTGTTTCGCCTACACAGTTCTGGATGGTATTACGAAAAA 563
Query 737 aaTATCCTCAGTTT-GCTCAGTTGCATAACGGAAAT-CACATGCAACAGGATGCTGAAGA 794
| |||||||||||| | ||||||||| || |||| | |||||||| ||||||||||||||
Sbjct 564 AGTATCCTCAGTTTAG-TCAGTTGCAGAATGGAA-TGCACATGCAGCAGGATGCTGAAGA 621
Query 795 ATGTTGGACACAAATGTTGTACACTCTTTCCCAGTCCCTAAAA-CTGCCATCG-CCTAGT 852
||||||||||||| |||| ||||||||||| |||||||| ||| | ||| | || ||
Sbjct 622 ATGTTGGACACAACTGTTATACACTCTTTCTCAGTCCCTTAAAGCA-CCAACTTCC-AGC 679
Query 853 GAAGATCCTGATGCTGTGAAGGCTCTTTTTGGTCTCAACCTTCTAAACAGGTTGCATTGC 912
|||||| ||||||||||||| ||||| |||||| |||| |||| | ||||||||||||
Sbjct 680 GAAGATTCTGATGCTGTGAAAGCTCTGTTTGGTGTCAATCTTCGGAGCAGGTTGCATTGT 739
Query 913 CAAGAAAGTAGCGAAGAAAGCTCAGAGACAGAATCTGTCTTTTCTCTGAAATGTCACATA 972
||||||||| |||||||||||||||||||||||||||| | |||||| |||||||| |||
Sbjct 740 CAAGAAAGTGGCGAAGAAAGCTCAGAGACAGAATCTGTATATTCTCTAAAATGTCATATA 799
Query 973 TCACATGAGGTGAACCACTTGCATGAAGGATTAAAACATGGACTGAAAGGAGAACTTGAA 1032
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 800 TCACATGAAGTGAACCACTTGCATGAAGGATTAAAACATGGACTGAAAGGGGAACTTGAA 859
Query 1033 AAAACATCTCCTTCTCTGGGTCGTACAGCGGTTTACGTAAAGGAGTCTCTTATAGATTCA 1092
|||||||||||| |||| || ||||| || ||||||| |||||||| |||||||||||
Sbjct 860 AAAACATCTCCTGCTCTTGGCCGTACTGCACTTTACGTCAAGGAGTCACTTATAGATTCC 919
Query 1093 TTGCCAAGGTACTTGACTGTTCAGTTTGTGAGATTCTTCTGGAAACGGGAGAGTAATCAG 1152
|||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||
Sbjct 920 TTGCCAAGGTACTTGACTGTTCAGTTCGTGCGATTTTTCTGGAAAAGGGAGAGTAATCAG 979
Query 1153 AAAGCAAAAATTCTCCGGAAAGTGGATTATCCGTTGGAGTTGGATATATATGACCTTTGT 1212
|||||||| |||||| ||||||||||||||||| ||| ||||||||||| |||||||||
Sbjct 980 AAAGCAAAGATTCTCAGGAAAGTGGATTATCCGCTGGTGTTGGATATATTTGACCTTTGC 1039
Query 1213 TCTGAGGATCTTCGAAAGAAACTGGAAGCTCCTCGACAGAAACTGAGAGAT-ATTGAAGG 1271
|||||||||||||| |||||||||||||||||||| |||||||| |||||| | |||||
Sbjct 1040 TCTGAGGATCTTCGGAAGAAACTGGAAGCTCCTCGCCAGAAACTTAGAGATGAG-GAAGG 1098
Query 1272 TCAAAAGCTTGGTCTGCAAGCCAGTGCAAAGAGCAGCTCAAAGGGT-GATGATGTGAAAA 1330
| ||||||||||||| ||| | ||||| ||||| ||||||||| | |||||||||||
Sbjct 1099 TAAAAAGCTTGGTCTTCAAACTAGTGCTAAGAGTGGCTCAAAGGACAG-TGATGTGAAAA 1157
Query 1331 TGACTGATGCTGAGG-GATCATCAAACCAAAGTGGCGAATCATCAACTGGTGA-CCAACA 1388
|||||||||| |||| | ||| |||| |||||| |||||||| || | | | || |||
Sbjct 1158 TGACTGATGCAGAGGCG-TCAGCAAATGGAAGTGGAGAATCATCCACAG-TAAACCCACA 1215
Query 1389 GGAAGGTGCT--T-C-GC--------CTCACATGACCGGAATTTATGACCTGGTATCGGT 1436
|||||||||| | | | |||||||||| ||||| |||||| |||| | ||
Sbjct 1216 GGAAGGTGCTACTTCTGAGAAGGAAACTCACATGACTGGAATCTATGACTTGGTCGCTGT 1275
Query 1437 GTTGACCCACAAAGGCAGAAGCGCAGACTCTGGGCATTATGTTGCATGGGTCAAGCAAGA 1496
| |||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 1276 GCTGACCCACAAGGGCAGGAGTGCAGACTCTGGTCATTATGTTGCATGGGTCAAGCAAGA 1335
Query 1497 GAGTGGTAAGTGGGTTCAATACGACGATGCCAACACTAGTCTT-CAACGGGGAG-AAGAT 1554
|||||| || ||| ||||||| || |||| |||| | || | | ||||| | || ||||
Sbjct 1336 GAGTGGCAAATGGATTCAATATGATGATGACAACCCGAG-CATGCAACGCG-AGGAAGAC 1393
Query 1555 ATCATTAAA-CTCTCTGGAGGAGGTGATTGGCATATGGCATACATCGTAATGTACAAGGC 1613
|||| ||| || || ||||||||||||||||||||||| |||||| ||||||||| ||
Sbjct 1394 ATCAC-AAAGCTATCCGGAGGAGGTGATTGGCATATGGCGTACATCACAATGTACAAAGC 1452
Query 1614 CCGTCT-CATCTCCATGTAATC 1634
||| || | |||||||||||||
Sbjct 1453 CCG-CTTCGTCTCCATGTAATC 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67991087325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5