BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21310.1 Length=1584 Score E Sequences producing significant alignments: (Bits) Value Ahg479651 jgi|Araly1|479651|fgenesh2_kg.3__2352__AT3G21310.1 2198 0.0 Ahg337332 jgi|Araly1|337332|fgenesh1_pg.C_scaffold_1003897 905 0.0 > Ahg479651 jgi|Araly1|479651|fgenesh2_kg.3__2352__AT3G21310.1 Length=1544 Score = 2198 bits (1190), Expect = 0.0 Identities = 1367/1453 (94%), Gaps = 9/1453 (1%) Strand=Plus/Plus Query 1 ACCAAAATCAGATTAGAGTTTCAGAGACATCTCTCGAATACGATCATCAGACAAGACTTA 60 |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 1 ACCAAAATCAGATTAGAGTTACAGAGACATCCCTCGAATACGATCATCAGACAAGACTTA 60 Query 61 ACCTCCATTTGCACGTCTTCCTGCTCACGACAGACAAATCATGAACGAATCCGACAGCTG 120 | |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 61 AGCTCCATTTACACGTCTCCCTGCTCACGAGAGACAAATCATGAACGAATCCGACAGCTG 120 Query 121 AACGAATTGCGTGTCTGAGAAGATCCAAATCCTAATTTTCTACCttttttttttG--GGA 178 |||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| Sbjct 121 AACGAATTGCGTGTCTGAGAAGATCCAAATCCTAATTTTCTACC-TTTTTTTTGGCAGGA 179 Query 179 ACTAAGGTTAGAATTTGGAGCTTCTCGTACGTTTTTGCTTGCCTACGTTTCCGGACAAAA 238 || || |||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 180 GCT-AGATTAGAATTTGGAACTTCTCGTACGTTTTCGCTTGCCTACGTTTCCGGACAAAA 238 Query 239 CCCTATTTGCATATAAACAGAACAGGTTCTGTTCATCAAGACAC-TGAAGCCTGATGGGG 297 |||||||||||||| ||||| | ||||||||||||||||| || ||||| ||||||||| Sbjct 239 CCCTATTTGCATATTAACAGGATTGGTTCTGTTCATCAAGA-ACTTGAAG-CTGATGGGG 296 Query 298 ATGGAGGAAGGGATTAAAGATAATGCTGCATCAGCTCCCAATTCAAGACCTACAAACCAA 357 ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 297 ATGGAGGAAGGGATTAAGGATAATGCTGCATCAGCTCCCAATTCAAGATATACAAACCAA 356 Query 358 CTTAAAGCTCTTTTACCGATGCGGGTGCTTCAAGTTTTCTTGTTGTTCTTTGTTTTGGTT 417 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 357 TTTAAAGCTCTTTTACCGATGCGGGTGCTTCAGGTTTTCTTGTTGTTCTTTGTTTTGGTT 416 Query 418 CTTGGAATCTCAGTCATTAGTATGCACATGATCAAGTACTTAAAGATTCAAACTTTAGCT 477 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 417 CTTGGAATCTCAGTCATTAGTATGCACATGATCAAGTACTTAAATATTCAAACTTTGGCT 476 Query 478 CCATCGACATTGATCTCTACTTATGATGAGAGAATTACGTTAGAGAGCCTTATCAAGCCT 537 ||||| |||||||||||| | ||||||||||||||||| ||||||||| ||||||||||| Sbjct 477 CCATCCACATTGATCTCTCCCTATGATGAGAGAATTACATTAGAGAGCTTTATCAAGCCT 536 Query 538 CCATTGAATGGTTGGCATTCCATGAATGACAGTGAGCTTCTTTGGCGTGCTTCGATGGAG 597 |||| || || |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 537 CCATCGAGTGTTTGGCACTCCATGAATGACAGTGAGCTTCTTTGGCGTGCTTCGATGGAG 596 Query 598 CCTCGGATACTTGACTATCCATTTAAAAGAGTTCCTAAAATGGCATTCATGTTTCTCACC 657 || ||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||| Sbjct 597 CCACGGATACTTGAATATCCGTATAAAAGGGTTCCTAAAATGGCATTCATGTTTCTCACC 656 Query 658 AAAGGACCTTTGCCATTTGCTCCACTTTGGGAAAGGTTTTTCAAAGGGCATGAGGGCTTT 717 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 657 AAAGGACCTTTGCCATTTGCTCCACTTTGGGAAAGGTTTTTCAACGGGCATGAGGGCTTT 716 Query 718 TACTCAATCTATGTTCATACTTTGCCAAATTATAGATCAGATTTCCCAAGCTCATCTGTG 777 |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||| Sbjct 717 TACTCAATCTATGTTCATGCGTTGCCAGATTATAGATCAGATTTCCCAAGCTCATCTGTG 776 Query 778 TTTTACAGAAGACAGATCCCAAGTCAGC-ATGTAGCTTGGGGAGAGATGAGTATGTGTGA 836 ||||| |||||||||||||||||||||| | || |||||||||||||||||||||||||| Sbjct 777 TTTTATAGAAGACAGATCCCAAGTCAGCCA-GTGGCTTGGGGAGAGATGAGTATGTGTGA 835 Query 837 TGCTGAAAGGAGGCTTTTGGCTAACGCGTTGCTCGATATCTCTAACGAATGGTTTGTTTT 896 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 836 TGCTGAAAGGAGGCTTTTGGCTAATGCCTTGCTCGATATCTCTAACGAATGGTTTGTTTT 895 Query 897 ACTATCTGAAGCGTGTATTCCTCTTCGCGGTTTCAACTTTGTCTACCGTTATGTCTCTAG 956 |||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| Sbjct 896 GCTATCTGAAGCGTGCATTCCTATTCGCGGTTTCAACTTTGTCTACCATTATGTCTCTAG 955 Query 957 ATCAAGATATAGTTTCATGGGTTCTGTTGACGAGGACGGGCCTTACGGGAGAGGCAGATA 1016 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 956 ATCAAGATATAGTTTCATGGGTTCTGTTGATGAGGACGGTCCTTACGGGAGAGGCAGATA 1015 Query 1017 TAGCTATGCAATGGGACCAGAAGTAAGTCTAAACGAGTGGAGAAAAGGGTCTCAGTGGTT 1076 || ||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 1016 CAGTTATGCAATGGGGCCAGAAGTCAGTCTAAGCGAGTGGAGAAAAGGGTCTCAGTGGTT 1075 Query 1077 TGAAATAAACAGAGCACTTGCTGTTGATATTGTTGAAGACATGGTTTACTATAACAAATT 1136 |||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1076 TGAAATTAACAGAGCACTTGCTGTTGAAATTGTTGAAGACATGGTTTACTATAAAAAATT 1135 Query 1137 CAAAGAGTTTTGTAGACCTCCTTGTTATGTAGATGAACATTACTTCCCAACAATGCTCTC 1196 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1136 CAAAGAGTTTTGTAGACCTCCTTGTTATGTAGATGAACATTACTTCCCCACAATGCTCTC 1195 Query 1197 TATTGGATATCCGGATTTTCTCGCTAATCGGACATTGACTTGGACAGATTGGTCAAGGGG 1256 |||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| || Sbjct 1196 TATTGGATATTCGGATTTGCTCGCTAATCGGACATTGACATGGACAGATTGGTCAAGAGG 1255 Query 1257 TGGTGCTCATCCAGCTACTTTTGGCAAGGCTGATATAACAGAGAAGTTCATCAAGAAGCT 1316 ||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| Sbjct 1256 TGGTGCTCATCCAGCTACTTTTGGCAAAACTGATATAACAGAGAGGTTCCTCAAGAAGCT 1315 Query 1317 GTCAAGAGGTAAAGCTTGCTTCTACAATGATCAGCCATCTCAAGTTTGTTATCTTTTTGC 1376 ||| ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 1316 TTCACGAGGTCAAGCTTGCTTCTACAATGATAAGCCATCTCAAGTGTGTTATCTTTTTGC 1375 Query 1377 AAGAAAGTTTGCTCCAAGCGCATTGAAGCCTTTACTTAAACTTGCACCAAAGGTTCTTGG 1436 |||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 1376 AAGAAAGTTTTCGCCAAGCGCATTGGAGCCTTTACTCAAACTTGCACCAAAGGTTCTTGG 1435 Query 1437 GTTCTAATTAATG 1449 ||||||| ||||| Sbjct 1436 GTTCTAACTAATG 1448 Score = 111 bits (60), Expect = 1e-23 Identities = 69/73 (95%), Gaps = 2/73 (3%) Strand=Plus/Plus Query 1512 CTTCGTATAGCATGGACACAACTCTGATCCTTATTGTCTCCTTCCACATTGATAATATAG 1571 ||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| Sbjct 1474 CTTCGTATAGCATGGACACAACT--GATCCTTACTGTCTCCTTCCACATTTATAATATAG 1531 Query 1572 ATACTTCAATGGC 1584 ||||||||||||| Sbjct 1532 ATACTTCAATGGC 1544 > Ahg337332 jgi|Araly1|337332|fgenesh1_pg.C_scaffold_1003897 Length=1212 Score = 905 bits (490), Expect = 0.0 Identities = 964/1184 (81%), Gaps = 68/1184 (6%) Strand=Plus/Plus Query 292 ATGGGGATGGAGGAAGGGATTAAAGATAATGCTGCATCAGCTCCC-AATTCAAGACCT-A 349 |||| |||||||||||| ||||||| |||||||||||| | ||| || || ||| | | Sbjct 7 ATGGAGATGGAGGAAGGTCTTAAAGAAAATGCTGCATCAAC-CCCTAAATCGAGA-GTCA 64 Query 350 CAAACC-AACTTAAAGCTCTTTTACCGATGCGGGTGCTTCAAG-TTTTCTTGTTG-TTCT 406 |||||| ||| || |||||||||| | ||||| |||||| || |||| || ||| ||| Sbjct 65 CAAACCAAAC-TAGAGCTCTTTTATCAATGCGTCTGCTTC-AGATTTTGTTATTGTTTC- 121 Query 407 TTGTTTTGGTTCTTGGAATCTCAGTCATTAGTATGCACATGATCAAGTACTTAAAGATTC 466 |||||||| |||||| ||||| || || |||| ||||||||||||| ||||||||||| Sbjct 122 TTGTTTTGACTCTTGGGATCTCTGTTGTTGGTATACACATGATCAAGTTCTTAAAGATTC 181 Query 467 -A-A-----A-CTT-TAGCTCCATCGACAT-TGATCTCTACT-TATG---ATGAGAGAAT 512 | | | ||| | | |||| | || | || |||||| | |||| |||||| | Sbjct 182 AACATTTGGATCTTGTGGTTCCAACCAC-TGTGCTCTCTA-TGTATGACCATGAGACTGT 239 Query 513 TACG-TTAGAGAGCCTTATCAAG-CCTCCATT-GAATGGTTGGCATTCCATGAATGACAG 569 || | ||||| ||| |||| || ||||| || |||| |||||| || |||||||||| Sbjct 240 TA-GTTTAGATAGCTTTAT-TAGACCTCC-TTCCAATGTTTGGCACTCAATGAATGACAC 296 Query 570 TGAGCTT-CTTTGGCGTGCTTCGATGGAGCCTCGGATACTTGACTATCCATTTAAAAGAG 628 ||| || ||||||||||||||||| ||||| | || | || ||||| |||||| ||| Sbjct 297 TGA-ATTGCTTTGGCGTGCTTCGATAGAGCCGCAGAGAAATGGGTATCCGTTTAAACGAG 355 Query 629 TTCCTAAAATGGCATTCATGTTTCTCACCAAAGGACCTTTGCCATTTGCTCCACTTTGGG 688 | |||||| |||| ||||||||||| ||||||| ||||| |||||||||||||| |||| Sbjct 356 TACCTAAACTGGCTTTCATGTTTCTTGCCAAAGGTCCTTTACCATTTGCTCCACTCTGGG 415 Query 689 A-AAGGTT-TTTCAAAGGG-CATGAGGGCT-TTTACTCAATCTATGTTCATACTTTGCCA 744 | || ||| ||| ||||| ||||||| | ||||||| |||||||||||| | ||||| Sbjct 416 AGAA-GTTCTTT--AAGGGAAATGAGGG-TCTTTACTCTATCTATGTTCATTCATTGCCT 471 Query 745 AATTATAGATCAGATTTCCCAAGCTCATCTGTGTTTTACAGAAGACAGATCCCAAGTCA- 803 ||||| | ||||||||| | || ||||||||||||||||||||| | ||||| ||||| Sbjct 472 AATTACAAATCAGATTTTTCGAGGTCATCTGTGTTTTACAGAAGATATATCCCTAGTCAG 531 Query 804 GCATGTAGCTTGGGGAGAGATGAGTATGTGTGATGCTGAAAGGAGGCTTTTGGCTAACGC 863 || ||| || |||||||||||||||||| |||| ||||| |||||||||||||||||||| Sbjct 532 GC-TGTGGCATGGGGAGAGATGAGTATGGGTGAAGCTGAGAGGAGGCTTTTGGCTAACGC 590 Query 864 GTTGCTCGATATCTCTAACGAATGGTTTGTTTTACTATCTGAAG-CGTGTATTCCTCTTC 922 |||||||||||||||||| |||||||||||| | || ||||| | | || |||||||| | Sbjct 591 GTTGCTCGATATCTCTAATGAATGGTTTGTTCTGCTGTCTGA-GTCATGCATTCCTCTGC 649 Query 923 GCGGTTTCAACTTTGTCTACCGTTATGTCTCTAGA-TCAAGATATAGTTTCATGGGTTCT 981 ||||||||| |||| |||| ||||||||||| || |||| |||||||||||||||| || Sbjct 650 GCGGTTTCAGCTTTATCTATAGTTATGTCTCT-GAATCAAAATATAGTTTCATGGGTGCT 708 Query 982 GTTGACGAGGACGGGCCTTACGGGAGAGGCAGATATAGCTA-TGCAATGGGACCAGA-AG 1039 | ||| ||||| || ||| | || ||||||||||| || | || ||||| ||| || | Sbjct 709 GCTGATGAGGAAGGACCTGATGGAAGAGGCAGATACAGG-ACTGAAATGGAACCTGAGA- 766 Query 1040 TAAGTCTAAACGAGTGGAGAAAAGGGTCTCAGTGGTTTGAAATAAACAGAGCA-CTTGCT 1098 | | |||| | ||||| | ||||||||||||||||||||||| ||| | | | || ||| Sbjct 767 TCACACTAAGCCAGTGGCGGAAAGGGTCTCAGTGGTTTGAAATTAACCG-GAAACTCGCT 825 Query 1099 GTTGATATTGTTGAAGACA-TGGTTTACTATAACAAATTCAAAGAGTTTTGTAGACCTCC 1157 ||||| |||||| |||| | | || ||||| ||||||||||||||||||||||||||| Sbjct 826 GTTGAGATTGTTCAAGATACTACTT-ACTATCCCAAATTCAAAGAGTTTTGTAGACCTCC 884 Query 1158 TTGTTATGTAGATGAACATTACTTCCCAACAATGCTCTCTATTGGAT-ATCCGGATTTT- 1215 |||||||| ||||||||||||||||| |||||||| ||||| | | ||| | |||| Sbjct 885 ATGTTATGTTGATGAACATTACTTCCCGACAATGCTGTCTAT-GAAACATC-GTCTTTTG 942 Query 1216 CTCGCTAATCGGACATTGACTTGGACAGATTGGTCAAGGGGTGGTGCTCATCCAGCTACT 1275 || ||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| Sbjct 943 CTGGCTAATCGGACATTGACATGGACAGATTGGTCACGTGGTGGTGCTCATCCAGCTACT 1002 Query 1276 TTTGGCAAGGCTGATATAACAGAGAAGTT--CATCAAGAAGCTGTCAAG-AGGTAAAGCT 1332 ||||| |||||||||||||| || ||||| | |||||||||| || | || ||| | Sbjct 1003 TTTGGTAAGGCTGATATAACGGA-AAGTTTTC-TCAAGAAGCT-TCCGGGAGCCAAATCC 1059 Query 1333 TGCTTCTACAATGATCAGCCA-TCTCAAGTTTGTTATCTTTTTGCAAGAAAGTTTGCTCC 1391 ||| ||||||||||||||| | |||||| | |||||||| ||||| |||||||||||||| Sbjct 1060 TGCCTCTACAATGATCAGC-AGTCTCAAATCTGTTATCTATTTGCGAGAAAGTTTGCTCC 1118 Query 1392 AAGCGCATTGAAGCCTTTACTTAAACTTGCACCAAAGGTTCTTG 1435 |||||||||| |||| ||||| |||||||||| ||| |||||| Sbjct 1119 AAGCGCATTGGAGCCCTTACTGCAACTTGCACCCAAGATTCTTG 1162 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59344601710 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5