BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21310.1
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479651 jgi|Araly1|479651|fgenesh2_kg.3__2352__AT3G21310.1 2198 0.0
Ahg337332 jgi|Araly1|337332|fgenesh1_pg.C_scaffold_1003897 905 0.0
> Ahg479651 jgi|Araly1|479651|fgenesh2_kg.3__2352__AT3G21310.1
Length=1544
Score = 2198 bits (1190), Expect = 0.0
Identities = 1367/1453 (94%), Gaps = 9/1453 (1%)
Strand=Plus/Plus
Query 1 ACCAAAATCAGATTAGAGTTTCAGAGACATCTCTCGAATACGATCATCAGACAAGACTTA 60
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ACCAAAATCAGATTAGAGTTACAGAGACATCCCTCGAATACGATCATCAGACAAGACTTA 60
Query 61 ACCTCCATTTGCACGTCTTCCTGCTCACGACAGACAAATCATGAACGAATCCGACAGCTG 120
| |||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 AGCTCCATTTACACGTCTCCCTGCTCACGAGAGACAAATCATGAACGAATCCGACAGCTG 120
Query 121 AACGAATTGCGTGTCTGAGAAGATCCAAATCCTAATTTTCTACCttttttttttG--GGA 178
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 121 AACGAATTGCGTGTCTGAGAAGATCCAAATCCTAATTTTCTACC-TTTTTTTTGGCAGGA 179
Query 179 ACTAAGGTTAGAATTTGGAGCTTCTCGTACGTTTTTGCTTGCCTACGTTTCCGGACAAAA 238
|| || |||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 180 GCT-AGATTAGAATTTGGAACTTCTCGTACGTTTTCGCTTGCCTACGTTTCCGGACAAAA 238
Query 239 CCCTATTTGCATATAAACAGAACAGGTTCTGTTCATCAAGACAC-TGAAGCCTGATGGGG 297
|||||||||||||| ||||| | ||||||||||||||||| || ||||| |||||||||
Sbjct 239 CCCTATTTGCATATTAACAGGATTGGTTCTGTTCATCAAGA-ACTTGAAG-CTGATGGGG 296
Query 298 ATGGAGGAAGGGATTAAAGATAATGCTGCATCAGCTCCCAATTCAAGACCTACAAACCAA 357
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 297 ATGGAGGAAGGGATTAAGGATAATGCTGCATCAGCTCCCAATTCAAGATATACAAACCAA 356
Query 358 CTTAAAGCTCTTTTACCGATGCGGGTGCTTCAAGTTTTCTTGTTGTTCTTTGTTTTGGTT 417
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 357 TTTAAAGCTCTTTTACCGATGCGGGTGCTTCAGGTTTTCTTGTTGTTCTTTGTTTTGGTT 416
Query 418 CTTGGAATCTCAGTCATTAGTATGCACATGATCAAGTACTTAAAGATTCAAACTTTAGCT 477
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 417 CTTGGAATCTCAGTCATTAGTATGCACATGATCAAGTACTTAAATATTCAAACTTTGGCT 476
Query 478 CCATCGACATTGATCTCTACTTATGATGAGAGAATTACGTTAGAGAGCCTTATCAAGCCT 537
||||| |||||||||||| | ||||||||||||||||| ||||||||| |||||||||||
Sbjct 477 CCATCCACATTGATCTCTCCCTATGATGAGAGAATTACATTAGAGAGCTTTATCAAGCCT 536
Query 538 CCATTGAATGGTTGGCATTCCATGAATGACAGTGAGCTTCTTTGGCGTGCTTCGATGGAG 597
|||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CCATCGAGTGTTTGGCACTCCATGAATGACAGTGAGCTTCTTTGGCGTGCTTCGATGGAG 596
Query 598 CCTCGGATACTTGACTATCCATTTAAAAGAGTTCCTAAAATGGCATTCATGTTTCTCACC 657
|| ||||||||||| ||||| | |||||| ||||||||||||||||||||||||||||||
Sbjct 597 CCACGGATACTTGAATATCCGTATAAAAGGGTTCCTAAAATGGCATTCATGTTTCTCACC 656
Query 658 AAAGGACCTTTGCCATTTGCTCCACTTTGGGAAAGGTTTTTCAAAGGGCATGAGGGCTTT 717
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 657 AAAGGACCTTTGCCATTTGCTCCACTTTGGGAAAGGTTTTTCAACGGGCATGAGGGCTTT 716
Query 718 TACTCAATCTATGTTCATACTTTGCCAAATTATAGATCAGATTTCCCAAGCTCATCTGTG 777
|||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct 717 TACTCAATCTATGTTCATGCGTTGCCAGATTATAGATCAGATTTCCCAAGCTCATCTGTG 776
Query 778 TTTTACAGAAGACAGATCCCAAGTCAGC-ATGTAGCTTGGGGAGAGATGAGTATGTGTGA 836
||||| |||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 777 TTTTATAGAAGACAGATCCCAAGTCAGCCA-GTGGCTTGGGGAGAGATGAGTATGTGTGA 835
Query 837 TGCTGAAAGGAGGCTTTTGGCTAACGCGTTGCTCGATATCTCTAACGAATGGTTTGTTTT 896
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 836 TGCTGAAAGGAGGCTTTTGGCTAATGCCTTGCTCGATATCTCTAACGAATGGTTTGTTTT 895
Query 897 ACTATCTGAAGCGTGTATTCCTCTTCGCGGTTTCAACTTTGTCTACCGTTATGTCTCTAG 956
|||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 896 GCTATCTGAAGCGTGCATTCCTATTCGCGGTTTCAACTTTGTCTACCATTATGTCTCTAG 955
Query 957 ATCAAGATATAGTTTCATGGGTTCTGTTGACGAGGACGGGCCTTACGGGAGAGGCAGATA 1016
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 956 ATCAAGATATAGTTTCATGGGTTCTGTTGATGAGGACGGTCCTTACGGGAGAGGCAGATA 1015
Query 1017 TAGCTATGCAATGGGACCAGAAGTAAGTCTAAACGAGTGGAGAAAAGGGTCTCAGTGGTT 1076
|| ||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1016 CAGTTATGCAATGGGGCCAGAAGTCAGTCTAAGCGAGTGGAGAAAAGGGTCTCAGTGGTT 1075
Query 1077 TGAAATAAACAGAGCACTTGCTGTTGATATTGTTGAAGACATGGTTTACTATAACAAATT 1136
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1076 TGAAATTAACAGAGCACTTGCTGTTGAAATTGTTGAAGACATGGTTTACTATAAAAAATT 1135
Query 1137 CAAAGAGTTTTGTAGACCTCCTTGTTATGTAGATGAACATTACTTCCCAACAATGCTCTC 1196
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1136 CAAAGAGTTTTGTAGACCTCCTTGTTATGTAGATGAACATTACTTCCCCACAATGCTCTC 1195
Query 1197 TATTGGATATCCGGATTTTCTCGCTAATCGGACATTGACTTGGACAGATTGGTCAAGGGG 1256
|||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1196 TATTGGATATTCGGATTTGCTCGCTAATCGGACATTGACATGGACAGATTGGTCAAGAGG 1255
Query 1257 TGGTGCTCATCCAGCTACTTTTGGCAAGGCTGATATAACAGAGAAGTTCATCAAGAAGCT 1316
||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||
Sbjct 1256 TGGTGCTCATCCAGCTACTTTTGGCAAAACTGATATAACAGAGAGGTTCCTCAAGAAGCT 1315
Query 1317 GTCAAGAGGTAAAGCTTGCTTCTACAATGATCAGCCATCTCAAGTTTGTTATCTTTTTGC 1376
||| ||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1316 TTCACGAGGTCAAGCTTGCTTCTACAATGATAAGCCATCTCAAGTGTGTTATCTTTTTGC 1375
Query 1377 AAGAAAGTTTGCTCCAAGCGCATTGAAGCCTTTACTTAAACTTGCACCAAAGGTTCTTGG 1436
|||||||||| | |||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1376 AAGAAAGTTTTCGCCAAGCGCATTGGAGCCTTTACTCAAACTTGCACCAAAGGTTCTTGG 1435
Query 1437 GTTCTAATTAATG 1449
||||||| |||||
Sbjct 1436 GTTCTAACTAATG 1448
Score = 111 bits (60), Expect = 1e-23
Identities = 69/73 (95%), Gaps = 2/73 (3%)
Strand=Plus/Plus
Query 1512 CTTCGTATAGCATGGACACAACTCTGATCCTTATTGTCTCCTTCCACATTGATAATATAG 1571
||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||
Sbjct 1474 CTTCGTATAGCATGGACACAACT--GATCCTTACTGTCTCCTTCCACATTTATAATATAG 1531
Query 1572 ATACTTCAATGGC 1584
|||||||||||||
Sbjct 1532 ATACTTCAATGGC 1544
> Ahg337332 jgi|Araly1|337332|fgenesh1_pg.C_scaffold_1003897
Length=1212
Score = 905 bits (490), Expect = 0.0
Identities = 964/1184 (81%), Gaps = 68/1184 (6%)
Strand=Plus/Plus
Query 292 ATGGGGATGGAGGAAGGGATTAAAGATAATGCTGCATCAGCTCCC-AATTCAAGACCT-A 349
|||| |||||||||||| ||||||| |||||||||||| | ||| || || ||| | |
Sbjct 7 ATGGAGATGGAGGAAGGTCTTAAAGAAAATGCTGCATCAAC-CCCTAAATCGAGA-GTCA 64
Query 350 CAAACC-AACTTAAAGCTCTTTTACCGATGCGGGTGCTTCAAG-TTTTCTTGTTG-TTCT 406
|||||| ||| || |||||||||| | ||||| |||||| || |||| || ||| |||
Sbjct 65 CAAACCAAAC-TAGAGCTCTTTTATCAATGCGTCTGCTTC-AGATTTTGTTATTGTTTC- 121
Query 407 TTGTTTTGGTTCTTGGAATCTCAGTCATTAGTATGCACATGATCAAGTACTTAAAGATTC 466
|||||||| |||||| ||||| || || |||| ||||||||||||| |||||||||||
Sbjct 122 TTGTTTTGACTCTTGGGATCTCTGTTGTTGGTATACACATGATCAAGTTCTTAAAGATTC 181
Query 467 -A-A-----A-CTT-TAGCTCCATCGACAT-TGATCTCTACT-TATG---ATGAGAGAAT 512
| | | ||| | | |||| | || | || |||||| | |||| |||||| |
Sbjct 182 AACATTTGGATCTTGTGGTTCCAACCAC-TGTGCTCTCTA-TGTATGACCATGAGACTGT 239
Query 513 TACG-TTAGAGAGCCTTATCAAG-CCTCCATT-GAATGGTTGGCATTCCATGAATGACAG 569
|| | ||||| ||| |||| || ||||| || |||| |||||| || ||||||||||
Sbjct 240 TA-GTTTAGATAGCTTTAT-TAGACCTCC-TTCCAATGTTTGGCACTCAATGAATGACAC 296
Query 570 TGAGCTT-CTTTGGCGTGCTTCGATGGAGCCTCGGATACTTGACTATCCATTTAAAAGAG 628
||| || ||||||||||||||||| ||||| | || | || ||||| |||||| |||
Sbjct 297 TGA-ATTGCTTTGGCGTGCTTCGATAGAGCCGCAGAGAAATGGGTATCCGTTTAAACGAG 355
Query 629 TTCCTAAAATGGCATTCATGTTTCTCACCAAAGGACCTTTGCCATTTGCTCCACTTTGGG 688
| |||||| |||| ||||||||||| ||||||| ||||| |||||||||||||| ||||
Sbjct 356 TACCTAAACTGGCTTTCATGTTTCTTGCCAAAGGTCCTTTACCATTTGCTCCACTCTGGG 415
Query 689 A-AAGGTT-TTTCAAAGGG-CATGAGGGCT-TTTACTCAATCTATGTTCATACTTTGCCA 744
| || ||| ||| ||||| ||||||| | ||||||| |||||||||||| | |||||
Sbjct 416 AGAA-GTTCTTT--AAGGGAAATGAGGG-TCTTTACTCTATCTATGTTCATTCATTGCCT 471
Query 745 AATTATAGATCAGATTTCCCAAGCTCATCTGTGTTTTACAGAAGACAGATCCCAAGTCA- 803
||||| | ||||||||| | || ||||||||||||||||||||| | ||||| |||||
Sbjct 472 AATTACAAATCAGATTTTTCGAGGTCATCTGTGTTTTACAGAAGATATATCCCTAGTCAG 531
Query 804 GCATGTAGCTTGGGGAGAGATGAGTATGTGTGATGCTGAAAGGAGGCTTTTGGCTAACGC 863
|| ||| || |||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 532 GC-TGTGGCATGGGGAGAGATGAGTATGGGTGAAGCTGAGAGGAGGCTTTTGGCTAACGC 590
Query 864 GTTGCTCGATATCTCTAACGAATGGTTTGTTTTACTATCTGAAG-CGTGTATTCCTCTTC 922
|||||||||||||||||| |||||||||||| | || ||||| | | || |||||||| |
Sbjct 591 GTTGCTCGATATCTCTAATGAATGGTTTGTTCTGCTGTCTGA-GTCATGCATTCCTCTGC 649
Query 923 GCGGTTTCAACTTTGTCTACCGTTATGTCTCTAGA-TCAAGATATAGTTTCATGGGTTCT 981
||||||||| |||| |||| ||||||||||| || |||| |||||||||||||||| ||
Sbjct 650 GCGGTTTCAGCTTTATCTATAGTTATGTCTCT-GAATCAAAATATAGTTTCATGGGTGCT 708
Query 982 GTTGACGAGGACGGGCCTTACGGGAGAGGCAGATATAGCTA-TGCAATGGGACCAGA-AG 1039
| ||| ||||| || ||| | || ||||||||||| || | || ||||| ||| || |
Sbjct 709 GCTGATGAGGAAGGACCTGATGGAAGAGGCAGATACAGG-ACTGAAATGGAACCTGAGA- 766
Query 1040 TAAGTCTAAACGAGTGGAGAAAAGGGTCTCAGTGGTTTGAAATAAACAGAGCA-CTTGCT 1098
| | |||| | ||||| | ||||||||||||||||||||||| ||| | | | || |||
Sbjct 767 TCACACTAAGCCAGTGGCGGAAAGGGTCTCAGTGGTTTGAAATTAACCG-GAAACTCGCT 825
Query 1099 GTTGATATTGTTGAAGACA-TGGTTTACTATAACAAATTCAAAGAGTTTTGTAGACCTCC 1157
||||| |||||| |||| | | || ||||| |||||||||||||||||||||||||||
Sbjct 826 GTTGAGATTGTTCAAGATACTACTT-ACTATCCCAAATTCAAAGAGTTTTGTAGACCTCC 884
Query 1158 TTGTTATGTAGATGAACATTACTTCCCAACAATGCTCTCTATTGGAT-ATCCGGATTTT- 1215
|||||||| ||||||||||||||||| |||||||| ||||| | | ||| | ||||
Sbjct 885 ATGTTATGTTGATGAACATTACTTCCCGACAATGCTGTCTAT-GAAACATC-GTCTTTTG 942
Query 1216 CTCGCTAATCGGACATTGACTTGGACAGATTGGTCAAGGGGTGGTGCTCATCCAGCTACT 1275
|| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 943 CTGGCTAATCGGACATTGACATGGACAGATTGGTCACGTGGTGGTGCTCATCCAGCTACT 1002
Query 1276 TTTGGCAAGGCTGATATAACAGAGAAGTT--CATCAAGAAGCTGTCAAG-AGGTAAAGCT 1332
||||| |||||||||||||| || ||||| | |||||||||| || | || ||| |
Sbjct 1003 TTTGGTAAGGCTGATATAACGGA-AAGTTTTC-TCAAGAAGCT-TCCGGGAGCCAAATCC 1059
Query 1333 TGCTTCTACAATGATCAGCCA-TCTCAAGTTTGTTATCTTTTTGCAAGAAAGTTTGCTCC 1391
||| ||||||||||||||| | |||||| | |||||||| ||||| ||||||||||||||
Sbjct 1060 TGCCTCTACAATGATCAGC-AGTCTCAAATCTGTTATCTATTTGCGAGAAAGTTTGCTCC 1118
Query 1392 AAGCGCATTGAAGCCTTTACTTAAACTTGCACCAAAGGTTCTTG 1435
|||||||||| |||| ||||| |||||||||| ||| ||||||
Sbjct 1119 AAGCGCATTGGAGCCCTTACTGCAACTTGCACCCAAGATTCTTG 1162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59344601710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5