BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21320.1
Length=2419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342282 jgi|Araly1|342282|fgenesh1_pg.C_scaffold_3002045 2344 0.0
> Ahg342282 jgi|Araly1|342282|fgenesh1_pg.C_scaffold_3002045
Length=1605
Score = 2344 bits (1269), Expect = 0.0
Identities = 1513/1628 (93%), Gaps = 28/1628 (2%)
Strand=Plus/Plus
Query 442 ATGGGAGGAATGAAAGATGAAGCAAAGAGGATAACAATTCCTCCATTGTTTCCAAGGGTT 501
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGAGGAATGAAAGATGAAGCAAAGAGGATAACAATTCCACCATTGTTTCCAAGGGTT 60
Query 502 CATGTCAATGATACTGGAAGAGGAGGCCTGTCTCAACAATTTGATGGCAAAACAATGTCT 561
||||| ||||||||||||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct 61 CATGTGAATGATACTGGAAGAGGAGGCTTATCTCAACCATTTGATGGCAAAACAATGTCT 120
Query 562 CTCG-TCTCTTCTAAACGTCCCAATCTTCCTTCTCCGACCAACAACATATCTGATTCTCT 620
| | ||||||||||||||||||||||||||||||||| | ||| || |||||||||||
Sbjct 121 -TTGATCTCTTCTAAACGTCCCAATCTTCCTTCTCCGA-C--CAATATCTCTGATTCTCT 176
Query 621 TTCCACTTTCTCTTTGTCTCTTCCTCCACCACCAAACAATGCCCGTCTCATTGATGGACC 680
||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 177 TTCCACTTTTTCTTTGTCAATTCCTCCACCACCAAACAATGCCCGTCTTATTGATGGACC 236
Query 681 TGAAAAGAATCAGTTTTCACCAATCTACAACACAAAGTTTGAGGGGAAGCTGAATAAAAA 740
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 237 TGAAAAGAATCAGTTTTCACCAATCTGCAACACAAAGTTTGAGGGGAAGATGAATAAGAA 296
Query 741 AGGCATAAATTATACAAGTCCTAAAGGATCATCAGTTACTAATACTAAGCCTAGTTCAAT 800
|||||| |||||| ||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 297 AGGCATGAATTATCCAAGTCCTAGAGGATCATCAGTTACTAATACTAAACCTAGTTCAAT 356
Query 801 AAAACAAAATGAGTACCTCAAGAACCTTACCAGCTTGGATTCTATTAA-GTCTCCT-ATT 858
||||||||||||||||||||||| |||||||| | ||||||||||||| || |||| | |
Sbjct 357 AAAACAAAATGAGTACCTCAAGAGCCTTACCAACCTGGATTCTATTAAGGT-TCCTGA-T 414
Query 859 GTTATACACTCAGAAATAGATCCACAAGCAAACACAGATTTGTCACTCCAATTTTGTACT 918
|||| || |||||||| ||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 415 GTTAGACGCTCAGAAACAGATCCAAAAGCAAACACAGATTTGTCACTCCAGTTTTGTACT 474
Query 919 AGCGGTAGCAGTAAACCCGGAGGAGAGGCTGTTGTTGGTTCTAAGATCCTTTTGTCAGAA 978
||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||||
Sbjct 475 AGCAGTAGCAGTAAAGCCGGAGGAGA---AGTTATTGGTTCTAAGATCCTTTTGTCAGAA 531
Query 979 CGTTTGGAAGATGAAAACCAGAATGGGTCTCCCAATGTGATGAAAACTCAATCATATAGA 1038
||||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||
Sbjct 532 TGTTTGGAAGATGAAAGCCAGAATGGGTCTCCTAAGGTGATGAAAACTCAATTATATAGA 591
Query 1039 AGAAACTTTGCTGAGTTTAACAATGAAACTCAAAAGAAGCCCAAAACTCTGCCTCGGCGT 1098
||||||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||
Sbjct 592 AGAAACTTTGCTGAGTTTAGCAGTGAAACTCTAAAGAAGCCTAAAACTCTGCCTCGGCGT 651
Query 1099 GAACAAGTTGCTTCAAACTGCTCTGCAATAGAGTCTTTGTCTGGTATAAGTGCATCTTCT 1158
||||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 652 GAACAAGATGCTTCAGACTGCTCTGCAATAGACTCTATGTCTGGTATAAGTGCATCTTCT 711
Query 1159 TATGATATTGCCAGAGTGATTGGTGAAAAGAGGTTTTGGAAGATGAGAACATATATGATC 1218
||| || ||||||||||||| ||||||| |||||||||||||||||| | | |
Sbjct 712 TATAATGTTGCCAGAGTGATAGGTGAAAGGAGGTTTTGGAAGATGAG-------A--A-C 761
Query 1219 AATCAGCAAAAGATCTTTGCCGGGCAAGTATTTGAGCTCCATAGACTGATAATGGTTCAA 1278
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 762 --TCAGCAAAAGATCTTTGCCGGGCAAGTATTTGAGCTGCATAGACTCATAATGGTTCAA 819
Query 1279 AAGATGGTTGCGAAGTCGCCAAACTTGTTTCTTGAAAGTAAGCTTAATGGTGTCAAACAT 1338
|||||| ||||||| |||||||||||| |||||||||||||||||||||| | |||||||
Sbjct 820 AAGATGATTGCGAAATCGCCAAACTTGCTTCTTGAAAGTAAGCTTAATGGCGGCAAACAT 879
Query 1339 GGTACAATGAGGTCATCACATCAGCTTG-CAATGGCGGCTTCAAAGGTTAGAAAGCCAAA 1397
|| |||||||||||||| ||||||| || ||||||| ||||||||| ||| ||| |||||
Sbjct 880 GGGACAATGAGGTCATCCCATCAGC-TGACAATGGCCGCTTCAAAGATTAAAAAACCAAA 938
Query 1398 CACTGAGAATCACAAACCTGTACCTGAAGAATATCCAGAGCATATGAAACCAAAGCTTCC 1457
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 CATTGAGAATCACAAACCTGTACCTGAAGAATATCCAGAGCATATGAAACCAAAGCTTCC 998
Query 1458 TCTACCTTCCATAAGCAAAGAACTCGTGACTCCTATTTGGCCACAACAGCTACTTCCTCC 1517
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 999 TCTACCTTCCATAAGCAAAGAACTCGTGACCCCAATTTGGCCACAACAGCTACTTCCTCC 1058
Query 1518 TCCTGGAAACCAATGGTTAGTTCCTGTAATAACTGATTCAGACGGTCTGGTCTATAAACC 1577
||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||
Sbjct 1059 TCCTGGAAACCAATGGTTAGTTCCTGTAATATCTCCTTCAGAAGGTCTGGTCTATAAACC 1118
Query 1578 ATTTCCAGGACCATGTCCTCCTTCTTCTTCAGCCTTCATGGTTCCAGTTTATGGCCAAGA 1637
|| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1119 ATATGCAGGACCATGTCCTCCTCCTTCTTCAGCCTTCATGGTTCCAGTTTATGGCCAAGA 1178
Query 1638 TTC-ACTCGAGACACCATTCAGGTTCCCTGTTTCTTCTCCATTCAGCCACAGCTACTTCC 1696
||| | | |||||| |||||||||||||||||||||||| ||| ||||||||||| ||||
Sbjct 1179 TTCCATT-GAGACAGCATTCAGGTTCCCTGTTTCTTCTCAATTTAGCCACAGCTATTTCC 1237
Query 1697 CACCTCCTAACGCGAGGACAACAGTTGACCAAACAAACCCGTTTGGTCAGTTTCAAAGAT 1756
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1238 CACCACCTAACGCGAGGACAACAGTTGACCAAACAAACCCGTTTGGTCAGTGTCAAAGAT 1297
Query 1757 GGTCTAACACATCAAGCCACATGACACAAGCCATTCCATTTTCTTTAAAGAAGTCTCAGG 1816
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 1298 GGTCTAACACATCAAGCCACATGACTCAAGCCATACCATTTTCCTTAAAGAAGTCTCAGG 1357
Query 1817 AATCTAATGACAGTGACATACATGGAAGCACAGCTTCAAGTCCACCAGAGAAGCATAAAC 1876
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 AATCTAATGACAGTGACATACATGGAAGCACAGCTTCAAGTCCACCAGAGAAGCATAAAT 1417
Query 1877 TTGAAGTGCTTCCTCTGTTTCCTACAGAGCCTACCCATCAAACTGATGAGTACAAGCAGA 1936
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1418 TTGAAGTGCTTCCTCTGTTTCCTACAGAGCCTACCCATCAAACTGATGAGTACAAGGAGA 1477
Query 1937 AACAGCAACCGATGCTTCGCGCCATTAAAGCCGTTCCTCATAATTCAACATCTGCCTCTG 1996
||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1478 AACAGCAACCGGTGCTTCGTGCCATTAAAGCCGTTCCTCATACTTCAACATCTGCCTCTG 1537
Query 1997 AATCTGCTGCAAGGATCTTCCGTTTCATTCAGGAAGAAAGGAGGGACTCAGATCATATGA 2056
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1538 AATCTGCTGCAAGGATCTTCCGTTCCATTCAGGAAGAAAGGAGGGACTCAGATCATATGA 1597
Query 2057 TTAGTTAG 2064
||||||||
Sbjct 1598 TTAGTTAG 1605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91149956285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5