BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21330.1
Length=1803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479653 jgi|Araly1|479653|fgenesh2_kg.3__2354__AT3G21330.1 2639 0.0
> Ahg479653 jgi|Araly1|479653|fgenesh2_kg.3__2354__AT3G21330.1
Length=1776
Score = 2639 bits (1429), Expect = 0.0
Identities = 1687/1804 (94%), Gaps = 47/1804 (3%)
Strand=Plus/Plus
Query 18 TGTATAGGGCTTTCAAGTCTTTTCTTACAGAAACTATCTATAACTCTAGCAGAGAGCTCA 77
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 2 TGTATAGGGCTTTCAAGTCTTTTCTTACAGAAACCATCTATAACTCTAGC--AGAGCTCA 59
Query 78 TTATAGAACAGAACAGAAACAGAGCTTTCTAAGTCTACAGCACAGAAATAAACCT-CATT 136
||||||||||||||||||||||| || | | || | ||| || ||
Sbjct 60 TTATAGAACAGAACAGAAACAGA-------AA--C-AGAG--C-TTTCTAATTCTACA-G 105
Query 137 TACAGACTGttttactttctttcctttttgagcatttcttctttctg-tttctttcctct 195
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 106 CACAGACTGTTTTACTTTCTTTCCTTTTTGAGCATTTCTTCTTTCTGTTTTTTTTCCTCT 165
Query 196 gttttctctttctttccctttttGGGTGT-CATCTCTTTAAGACAGAAGAAACGTTTCTC 254
|||||||||||||||||| |||||||| | ||||||||| | || | | ||||||
Sbjct 166 GTTTTCTCTTTCTTTCCC-TTTTGGGTTTCCATCTCTTT---A-AG--G---CATTTCTC 215
Query 255 AGAGTTTCCTGTGAACTCATCTGTTTGTTCTCTTCTTCCGGTTTCACTTTTTCATGTCCT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 AGAGTTTCCTGTGAACTCATCTGTTTGTTCTCTTCTTCCGGTTTCACTTTTTCATGTCCT 275
Query 315 GCCGTTATTACAACGAGGATTGTGTTTGATCCGATGGAAGGATTGGAATCTGTGTACGCT 374
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 GCCGTTATTACAACAAGGATTGTGTTTGATCCGATGGAAGGATTGGAATCTGTGTACGCT 335
Query 375 CAAGCTATGTATGGAATGACACGAGAGAGCAAAATCATGGAG---CATCAAGGATCAGAT 431
|||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct 336 CAAGCTATGTATGGAATGACCCGAGAAAGCAAAATCATGGAGCATCATCAAGGATCAGAT 395
Query 432 TTGATTTGGGGAGGAAATGAGCTAATGGCTCGAGAACTCTGTTCTTCTTCTTCTTATCAC 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 396 TTGATTTGGGGAGGAAATGAGCTAATGGCTCGAGAACTCTGTTCTTCTTCTTCTTTTCAC 455
Query 492 CACCAACTCATTAATCCGAATCTTAGCAGCTGTTTCATGTCTGATCTTGGAGTCTTAGGT 551
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 456 CACCAACTCATTAATCCGAATCTTAGCAGCTGTTTCATGTCTGATCTTGGAGTCATAGGT 515
Query 552 GAGATTCAACAGCAGCAACATGTTGGCAACAGAGCTAGCTCGATAGATCCATCATCACTC 611
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 516 GAGATTCAACAGCAGCAACATGTTGGAAACAGAGCTAGTTCGATAGATCCATCATCACTC 575
Query 612 GATTGTTTGTTATCTGCGACGTCGAATAGCAACAACACCTCGACGGAGGACGATGAAGGA 671
|||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 576 GATTGTTTGTTATCGGCGACGTCGAACAGCAACAACACTTCGACGGAAGACGATGAAGGC 635
Query 672 ATATCTGTGCTTTTCTCAGATTGTCAGACTCTTTGGAGCTTTGGTGGAGTCTCATCTGCA 731
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 636 ATTTCTGTGCTTTTCTCAGATTGTCAGACTCTTTGGAGCTTTGGTGGGGTCTCATCTGCA 695
Query 732 GAGTCTGAGAACAGAGAGATCACTACTGAGACGACAACAACGATAAAGCCTAAGCCTTTG 791
|||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct 696 GAGTCTGAGAACAGAGAGGTCACTAATGAGACGACAACAACGATAAAGCCTAAGTCTTTG 755
Query 792 AAGAGAAACAGAGGAGGAGATGGAGGAACTACTGAGACTACAAC-A--ACAACAACAAAA 848
|||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 756 AAGAGAAACAGAGGAGGAGATGGAGGAACTACTGAGACGACAACAACCACAACAACAAAG 815
Query 849 CCTAAGTCTTTGAAGAGAAACAGAGGAGACGAGACAGGAAGTCACTTTAGTCTTGTTCAT 908
||||||| | ||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 816 CCTAAGTATGTGAAGAGAAACAGAGGAGACGAGACAGGAAGTCACTTCAGTCTTCTTCAT 875
Query 909 CCTCAAGATGATTCGGAGAAAGGAGGTTTCAAGCTTATATACGATGAGAATCAATCGAAA 968
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 876 CCTCAAGATGATTCGGAGAAAGGAGGTTTCAAGCTTATCTACGATGAGAATCAATCGAAA 935
Query 969 TCAAAGAAACCAAGAACAGAGAAAGAACGAGGCGGTTCTTCGAACATTAGTTTCCAACAT 1028
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 936 TCAAAGAAACCAAGAACAGAGAAAGAACGAGGCGGTTCTTCAAACATTAGCTTCCAACAT 995
Query 1029 TCAACTTGTTTGTCTGACAATGTCGAGCCCGATGCTGAGGCGATTGCACAAATGAAGGAG 1088
||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||
Sbjct 996 TCAACTTGTTTGTCTGACAATGTCGAGCCTGATGCTGAGGCTATTGCGCAGATGAAGGAG 1055
Query 1089 ATGATATACAGAGCGGCTGCATTTAGACCGGTGAATTTCGGGTTAGAGATTGTGGAGAAG 1148
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1056 ATGATATACAGAGCGGCTGCGTTTAGACCGGTGAATTTCGGGTTAGAGATTGTGGAGAAG 1115
Query 1149 CCTAAGAGGAAGAACGTCAAGATATCGACGGATCCTCAAACGGTTGCAGCGAGACAGAGA 1208
|||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1116 CCTAAGAGAAAGAACGTGAAGATATCGACGGATCCTCAAACTGTTGCAGCAAGACAGAGA 1175
Query 1209 AGGGAGAGGATAAGTGAGAAGATTAGGGTTTTACAAACATTGGTTCCAGGTGGGACGAAG 1268
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1176 AGGGAGAGGATAAGTGAGAAGATTAGGGTTTTACAAACATTAGTTCCAGGTGGGACGAAG 1235
Query 1269 ATGGATACTGCATCAATGCTTGATGAAGCTGCTAATTATCTCAAGTTCCTTAGAGCACAA 1328
||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 ATGGACACAGCTTCAATGCTTGATGAAGCTGCTAATTATCTCAAGTTCCTTAGAGCACAA 1295
Query 1329 GTAAAAGCTTTAGAAAACTTGAGACCCAAGCTTGACCAAACCAATCTCTCTTTCTCTTCT 1388
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 GTAAAGGCTTTAGAAAACTTGAGACCCAAGCTTGACCAAACCAATCTCTCTTTCTCTTCT 1355
Query 1389 GCTCCTACATCGTTTCCATTATTCCACCCATCTTTTCTTCCATTGCAAAATCCTAATCAA 1448
|||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1356 GCTCCT---TCGTTTCCCTTATTTCACCCATCTTTTCTTCCATTGCAAAACCCTAATCAA 1412
Query 1449 ATCCATCATCCAGAGTGTTG-ACAGATTATAAACTTTTGAGTTTCATCATCATCAACAGA 1507
|||| |||||||| |||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1413 ATCCGTCATCCAGGGTGTTGAACAGATTCTAAACTTTTGAGTTTCATCATCATCAACAGA 1472
Query 1508 ATCATGGCGTCTTGATTGTTTTAGCAGTTCTCAAGAAAGGCAACTTCTGTGACAAGGGTG 1567
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1473 ATCATGGCGTCTTGATTGTTTTAGCAGTTCTCAAGAAAGGCAACTTCTGTGAGAAGGGTG 1532
Query 1568 GTGTCGGGCAGTGTTGTTTACACTTTCCAGTCTTTGTTTTGCATTTCTTTTTATATAAAG 1627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 GTGTCGGGCAGTGTTGTTTACACTTTCCAGTCTTTGTTTTGCATTTCTTTTTATATAAAG 1592
Query 1628 TTTGTATTT-TATATA--GAATCTGTGGAATTCGAGGGTTGAAATATTGT--G--AAAAA 1680
||||| ||| |||||| ||||||||||||||||||||||||| | || | | |||||
Sbjct 1593 TTTGTTTTTATATATATAGAATCTGTGGAATTCGAGGGTTGAATTTTTTTTTGCGAAAAA 1652
Query 1681 CAGAGCCGCAAGAGGTTAATTACAGTCTCTGCAATATTTT-CAACCTTTTATTACTTTAT 1739
||||||||||||||||||||||| ||| |||||| ||||| |||||||||||||||||||
Sbjct 1653 CAGAGCCGCAAGAGGTTAATTACTGTCACTGCAACATTTTTCAACCTTTTATTACTTTAT 1712
Query 1740 TAGAGTAAAGATAGCGTAAGATAATTGCAATTATGAAGCGATGATTATCAACAAAAGTGT 1799
||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1713 TAGAGAAAAGAAAGCGTAAGAGAATTGCAATTATGAAGCGATGATTATCAACAAAAGTGT 1772
Query 1800 TTAG 1803
||||
Sbjct 1773 TTAG 1776
Score = 63.9 bits (34), Expect = 4e-09
Identities = 40/43 (93%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 834 ACAACAACAACAAAACCTAAGTCTTTGAAGAGAAACAGAGGAG 876
|||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 729 ACAACAACGATAAAGCCTAAGTCTTTGAAGAGAAACAGAGGAG 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67686365365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5