BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21350.2
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479655 jgi|Araly1|479655|fgenesh2_kg.3__2356__AT3G21350.1 828 0.0
> Ahg479655 jgi|Araly1|479655|fgenesh2_kg.3__2356__AT3G21350.1
Length=944
Score = 828 bits (448), Expect = 0.0
Identities = 512/543 (94%), Gaps = 4/543 (1%)
Strand=Plus/Plus
Query 3 GCTCTTCTCCTTCACGGCGAAGTGA--CTCA--CTTCCATGGATTCCTCTCTGCTCTCGG 58
||||||||||||| |||||||| || | || |||||||||| |||||||| |||||||
Sbjct 1 GCTCTTCTCCTTCCCGGCGAAGCGAGTCACACTCTTCCATGGACTCCTCTCTACTCTCGG 60
Query 59 CGGCTACGGCCGATACCTTCAACGGCAATGCGGCGGATCAAATTCCTCCTCCGTTACAGC 118
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
Sbjct 61 CGGCTACGGCCGATACCTTCAACGGCAATGCGGCGGATCAGATTCCTCCTCCGTCGCAAC 120
Query 119 CTCCGGGAACGGATATGACTGGAATTTCCTTCAGGGATCAGCTCTGGATCAATTCATACC 178
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 121 CTCCGGGTACGGATATGACTGGAATATCCTTCAGGGATCAGCTCTGGATCAATTCATATC 180
Query 179 CTCTTGATCGTAACTACATCTTCGATTACTTCGCTTTGTCTCCTTTCTACGATACAACTT 238
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 181 CTCTTGATCGTAACTACATCTTCGATTACTTCGCTTTGTCTCCCTTCTACGATACAACCT 240
Query 239 GCAACAATGAGATTCTTCGGAGAAGATCCATTCACCCTCTCGATCTCTCTCACCTCTCGA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCAACAATGAGATTCTTCGGAGAAGATCCATTCACCCTCTCGATCTCTCTCACCTCTCGA 300
Query 299 AGATGACAGGTCTAGAATATATGTTAACTGATGCTACTGAACCAAACCTGTTCGTCTTTC 358
|||||||||| || || |||||| ||||||||||||||||||| |||||||||||||| |
Sbjct 301 AGATGACAGGACTTGAGTATATGCTAACTGATGCTACTGAACCTAACCTGTTCGTCTTCC 360
Query 359 GTAAGCAAAAGAGAGATGGTCCTGAGAAAGTCACACCGATGCTAACATATTATATCTTGG 418
||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 361 GTAAGCAGAAGAGAGATGGTCCTGAGAAAGTCACACCCATGCTAACTTATTATATCTTGG 420
Query 419 ATGGTTCTATTTACCAAGCTCCTCAGCTTTGTAGTGTCTTCGCAGCTCGAGTTAGTCGGA 478
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 ATGGTTCTATATACCAAGCTCCTCAGCTTTGTAGTGTCTTCGCAGCTCGTGTTAGTCGGA 480
Query 479 CTATTTATAATATATCCAAGGCTTTCACTGATGCTGCATCGAAATTGGAGACCATTAGAC 538
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 481 CTATTTATAATATATCCAAGGCTTTCTCTGTTGCTGCATCGAAATTGGAGACCATTAGAC 540
Query 539 AAG 541
|||
Sbjct 541 AAG 543
Score = 604 bits (327), Expect = 3e-172
Identities = 379/404 (94%), Gaps = 4/404 (1%)
Strand=Plus/Plus
Query 665 TTGATACTGAAAACCAGAACGAA-CCTGCTGAGTCGAAGCCTGCTAGTGAGACAGTTGAT 723
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 544 TTGATACTGAAAACCAGAACGAACCCT-CTGAGTCGAAGCCTGCTAGTGAGACAGTTGAT 602
Query 724 CTAAAGGAAATGAAGCGAGTCGATGTCATTCTTACCTCATTATATCGCAAGTTAGCGCCA 783
||||| |||||||||||||| ||||||||||||||||| || || ||||||||||| |||
Sbjct 603 CTAAAAGAAATGAAGCGAGTTGATGTCATTCTTACCTCGTTGTACCGCAAGTTAGCCCCA 662
Query 784 CCACCTCCACCCCCACCCTTTCCTGAAGGTTATGTTAGCCAAGAAGCATTAGGAGAAAAG 843
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GCACCTCCACCCCCTCCATTTCCTGAAGGTTATGTTAGCCAAGAAGCATTAGGAGAAAAG 722
Query 844 GAAGAGCTTGGAACACAGGGAGGAGAGTCACAACCGCCTCAAGTTGATCCAATTATCGAT 903
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 723 GAAGAGCTTGGAACACAGGGAGGAGAGTCACAACCGCCTCAAATTGATCCTATTATCGAT 782
Query 904 CAAGGTCCTGCTAAAAGAATGAAGTTCTAAGCTCATCAAAATTGTTTCTTCATCTATGCA 963
||||||||||||||||||||||| || ||||||||| || ||||||| | ||||||||||
Sbjct 783 CAAGGTCCTGCTAAAAGAATGAAATTATAAGCTCATTAAGATTGTTT-T-CATCTATGCA 840
Query 964 TGTATAGAATTTTTAGGTACTAGCAAAGGCTCTTCTACTTTTTCGCATTGTTTAATCTGA 1023
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 841 TGTATAGAATTTTTAGGTACTAGCAAAGGCTCTTCTACTTTTTCTCATCGTTTAATATGA 900
Query 1024 ACTCCTTACACAATTGTTGACATGATTACTTCTCATAAAGTTTC 1067
|||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct 901 ACTCGTTACACAATTGTTGACCTGATTACTTCTCATAAATTTTC 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40600906605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5