BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21360.1
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905161 jgi|Araly1|905161|Al_scaffold_0003_2289 1563 0.0
Ahg930094 jgi|Araly1|930094|scaffold_302551.1 383 2e-105
> Ahg905161 jgi|Araly1|905161|Al_scaffold_0003_2289
Length=993
Score = 1563 bits (846), Expect = 0.0
Identities = 945/994 (95%), Gaps = 2/994 (0%)
Strand=Plus/Plus
Query 62 ATGGCGGAACTGTTGTTGGTGGAAACTCCAATCCCACAGCAAAAGCACTACGAATCCAAA 121
||||||||| ||||| ||| ||||||| |||||||||||||||||||||| ||||||||
Sbjct 1 ATGGCGGAATTGTTGGTGGAAGAAACTCGAATCCCACAGCAAAAGCACTACAAATCCAAA 60
Query 122 CCATTCCCGGCGGTGATATCACCACCGTCTGCTTCGATTCCAATTCCTGCTCTGTCTCTC 181
|||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct 61 CCATTCCCGGCGGTGATATCACCACCGTCTTCGTCGATTCCGATTCCTGCTCTGTCTCTC 120
Query 182 CCACTATTCACTCAAACTATCAA-AACTCAGAAACACTATCTCGATTCTCTCTTGCACGA 240
|||||||||||||| | |||||| || |||||||| ||| ||||||||||||||||||||
Sbjct 121 CCACTATTCACTCAGAGTATCAAGAA-TCAGAAACCCTACCTCGATTCTCTCTTGCACGA 179
Query 241 ATCCGGAGCAGTGCTATTCAGAGGTTTTCCGGTGAATTCCGCCGATGATTTCAACGACGT 300
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 ATCCGGAGCAGTGCTTTTCAGAGGTTTTCCGGTGAATTCCGCCGAGGATTTCAACGACGT 239
Query 301 CGTTGAAGCTTTCGGTTTCGATGAGCTTCCTTACGTCGGAGGCGCTGCTCCTCGCACTAG 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 CGTTGAAGCTTTCGGTTTCGATGAGTTTCCTTACGTCGGAGGCGCTGCTCCTCGCACTAG 299
Query 361 CGTCGTCGGTCGTGTCTTCACTGCTAATGAATCTCCTCCTGATCAGAAGATTCCTTTTCA 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGTCGTCGGCCGTGTCTTCACTGCTAATGAATCTCCTCCTGATCAGAAGATTCCTTTTCA 359
Query 421 CCACGAGATGGCTCAGGTTCGTGAGTTTCCATCAAAGTTGTTCTTTTACTGTGAGATTGA 480
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCACGAGATGGCTCAGGTGCCTGAGTTTCCATCAAAGTTGTTCTTTTACTGTGAGATTGT 419
Query 481 GCCTAAGTGTGGTGGAGAGACTCCAATTGTGTTGAGTCATGTTGTGTATGAGAGAATGAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCCTAAGTGTGGTGGAGAGACTCCAATTGTGTTGAGTCATGTTGTGTATGAGAGAATGAA 479
Query 541 AGATAAACATCCAGAGTTTGTTCAGAGATTAGAGGAACATGGTTTGCTTTATGTTAGGGT 600
||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 480 AGAGAAACATCCAGAGTTTGTTCAAAGATTGGAGGAACATGGTTTGCTTTATGTTAGGGT 539
Query 601 TTTAGGTGAAGATGATGATCCTTCATCTCCCATTGGACGTGGTTGGAAATCTACATTCTT 660
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 540 TTTAGGTGAAGATGATGATCCTTCATCTCCCATTGGCCGTGGTTGGAAATCTACTTTCTT 599
Query 661 AACCCATGACAAGAACCTTGCTGAGCAAAGGGCGGTTGATTTGGGAATGAAACTGGAATG 720
|||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 600 GACCCATGACAAGAACCTTGCTGAGCAAAGGGCGGCTAATTTGGGAATGAAATTGGAATG 659
Query 721 GACAGAGGATGGTGGAGCCAAGACGGTAATGGGTCCGATTCCGGCTATCAAATATGACGA 780
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 GACAGAGGATGGTGGAGCCAAGACGGTAATGGGTCCGATACCGGCTATCAAATATGACGA 719
Query 781 GTCGAGAAACCGTAAAGTATGGTTTAACAGCATGGTAGCTGCTTATACGGGATGGGAGGA 840
||| |||||||| |||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 720 GTCCAGAAACCGCAAAGTATGGTTTAATAGTATGGTAGCTGCTTATACGGGCTGGGAGGA 779
Query 841 TAAGCGGAATGATCCAAGAAAGGCTGTGACTTTTGGGGATGGAAAGCCTTTACCTGCGGA 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 780 TAAGCGGAATGATCCAAGAAAGGCTGTGACTTTTGGGGATGGAAAGCCTTTACCCGAGGA 839
Query 901 TATAGTCCATGATTGTCTTAGGATTCTTGAAGAGGAATGTGTTGCTGTTCCGTGGCAGAG 960
|||||| ||||| ||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 840 TATAGTTCATGACTGTCTCAGAATCCTTGAAGAGGAATGTGTTGCTGTTCCGTGGCAGAG 899
Query 961 AGGAGATGTTTTGCTTATAGATAACTGGGCGGTTCTTCATTCTCGAAGACCGTTTGATCC 1020
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 900 AGGAGATGTTTTGCTTATAGATAACTGGGCGGTTCTTCACTCTCGAAGACCATTTGAACC 959
Query 1021 TCCTCGTCGAGTTCTTGCATCACTCTGCAAATAG 1054
|||||| || ||||||||||||||||||||||||
Sbjct 960 TCCTCGCCGGGTTCTTGCATCACTCTGCAAATAG 993
> Ahg930094 jgi|Araly1|930094|scaffold_302551.1
Length=1623
Score = 383 bits (207), Expect = 2e-105
Identities = 227/237 (96%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 1282 AGATCTTGCAAAGAAACTCGACTCAGAGCTCCTCGTGTAGCTTTGAGGACTTAGATGGTT 1341
|||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 1623 AGATCTTGCAGAGAAACTCGACTCAGAGCTCCTCATGGAGCTTCGAGGACTTAGATGGTT 1564
Query 1342 TCAGGCCTGGTTTGAGGAATTCAGAAAGCCATTTTGCGGATTCTTTCTCCATACGAGTCA 1401
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1563 TCAGGCCAGGTTTGAGGAATTCAGAAAGCCATTTTGCAGATTCTTTCTCCATACGAGTCA 1504
Query 1402 AGTTGTTCTTGAAGTCTATGTAGTAAACTCCGAACCTAGCTGTGTACCCGTCTTGCCACT 1461
|||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1503 AGTTGTTCTTGAAGTCGATGTAGTAAACCCCGAACCTTGCTGTGTACCCATCTTGCCACT 1444
Query 1462 CGAAGTTGTCCATTAAAGACCACAAGAAATACGATGTAACATTCACCTTGTCTTCAC 1518
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 CGAAGTTGTCCATTAAAGACCACAAGAAATACGATGTAACATTCACCTTGTCTTCAC 1387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59877865140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5