BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21370.1 Length=1889 Score E Sequences producing significant alignments: (Bits) Value Ahg930094 jgi|Araly1|930094|scaffold_302551.1 2519 0.0 > Ahg930094 jgi|Araly1|930094|scaffold_302551.1 Length=1623 Score = 2519 bits (1364), Expect = 0.0 Identities = 1536/1620 (95%), Gaps = 7/1620 (0%) Strand=Plus/Plus Query 62 aaaaaaTCAACAATGAAGATTCCTCTCTTGGGGTTACTTTTACTAATAAGTCTTGTCGGC 121 ||| |||||||||||||| ||||||| |||||||||||||| || ||||| |||||||| Sbjct 9 AAAGAATCAACAATGAAGTTTCCTCTATTGGGGTTACTTTTGCTCCTAAGTATTGTCGGC 68 Query 122 TCTCCGACAAGGGCTGAAGAAGGACCTGTTTGCCCGAAGACCGAAACTCTTAGCCGTGCA 181 ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 69 TCTACGACAAGGGCCGAAGAAGGACCTGTTTGCCCGAAGACCGAAACTCTTAGCCGTGCA 128 Query 182 AGTTTTCCGGAGGGCTTTATGTTTGGTACCGCAACCGCAGCCTTTCAGGTGGAAGGTGCA 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 129 AGTTTTCCGGAGGGCTTTATGTTTGGTACCGCAACCGCAGCCTTTCAGGTGGAAGGTGCA 188 Query 242 GTAAATGAAGGTTGCAGAGGTCCAAGCCTGTGGGACATCTACACCAAGAAATTTCCACAT 301 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 189 GTAAATGAAGGTTGCAGAGGTCCAAGCCTGTGGGATATCTACACCAAGAAATTTCCACAT 248 Query 302 AGAGTTAAGAATCACAATGCTGACGAGGCCGTCGATTTCTACCATCGCTACAAGGAGGAT 361 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 249 AGAGTTAAGAATCACAACGCTGACGAGGCCGTCGATTTCTACCATCGCTACAAGGAGGAT 308 Query 362 ATCCAGTTGATGAAAAAGCTGAACACTGATGGTTTTAGACTTTCTATTTCGTGGCCAAGA 421 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 309 ATCCAGTTGATGAAAAAGCTGAACACTGATGGTTTTAGACTTTCCATTTCGTGGCCAAGA 368 Query 422 ATATTTCCTCATGGGAGGATGGAGAAAGGAATAAGCAAAGAAGGAGTTCAATTTTACCAC 481 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 369 ATATTTCCTCATGGGAGGATGGAGAAAGGAATCAGCAAAGAAGGGGTTCAATTTTACCAT 428 Query 482 GATCTTATTGATGAGCTCCTTAAAAATGACATAACACCATTAGTAACGGTTTTTCATTGG 541 |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 429 GATCTTATAGATGAGCTCTTTAAAAATGACATAACACCATTAGTAACGGTTTTTCATTGG 488 Query 542 GATACTCCCGCCGATTTGGAAGATGAATACGGTGGCTTTTTAAGCGAACGTATTGTGCCT 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 GATACTCCCGCCGATTTGGAAGATGAATACGGTGGCTTTTTAAGCGAACGTATTGTGCCT 548 Query 602 GATTTTGTGGAGTATGCAAACTTCACGTTCCACGAGTATGGGGACAAAGTGAAAAACTGG 661 |||||||||||||| ||||||||||||||||||||||| || |||||||||||| ||||| Sbjct 549 GATTTTGTGGAGTACGCAAACTTCACGTTCCACGAGTACGGAGACAAAGTGAAACACTGG 608 Query 662 ATTACGTTCAACGAGCCATGGGTCTTTAGCCGTTCGGGCTACGACGTTGGGAAGAAAGCA 721 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 609 ATTACGTTCAACGAGCCATGGGTCTTTAGCCGTTCGGGCTACGACGTTGGAAAGAAAGCA 668 Query 722 CCAGGACGTTGTTCTCCTTACGTCAAAGAGTTTGGAAAGCTTTGTCAAGATGGACGGTCA 781 || |||||||||||||||||||||||||| |||||| | |||||||||||||||||||| Sbjct 669 CCCGGACGTTGTTCTCCTTACGTCAAAGACTTTGGACATCTTTGTCAAGATGGACGGTCT 728 Query 782 GGATTCGAACCTTATGTTGTCAGTCACAATTTACTCGTGGGTCATGCTGAAGCTGTTGAT 841 ||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 729 GGATTCGAAGCTTATGTCGTCAGTCACAATTTACTTGTGGGTCATGCTGAAGCTGTTGAT 788 Query 842 GCTTTCCGAAAATGCGAAAAGTGCAAAGGTGGTAAAATCGGAATCGCTCATAGTCCAGCT 901 |||||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||| Sbjct 789 GCTTTCCGAAAATGCGAAAAATGCAAAGGTGGTAAAATCGGGATTGCTCATAGTCCGGCT 848 Query 902 TGGTTTGAACCCGAAGATGTGGAAGGAGGTCAAGCGACTG-TAAACCGTGTGCTTGATTT 960 ||||||||||| ||||||||||| ||||||||| | || ||||||||||||| ||||| Sbjct 849 TGGTTTGAACCGGAAGATGTGGAGGGAGGTCAAAATA-TGGTAAACCGTGTGCTAGATTT 907 Query 961 CGTCATTGGCTGGCATTTGGATCCTACCACGTTCGGGGACTATCCTCAGTCTATGAAAGA 1020 | |||||||||||||||||||||||||||||| ||| || ||||| |||||||||||||| Sbjct 908 CATCATTGGCTGGCATTTGGATCCTACCACGTACGGAGATTATCCACAGTCTATGAAAGA 967 Query 1021 CGCGGTTGGATCTCGGTTGCCAAGATTTACCAAA-GCCCAAAAGGCAAAACTGAAAGATT 1079 | |||||| ||||||| ||||||||||| ||| || |||||||||||||||||||||| Sbjct 968 TACAGTTGGAACTCGGTTACCAAGATTTAC-AAATGCTCAAAAGGCAAAACTGAAAGATT 1026 Query 1080 CGACAGACTTCGTGGGAATAAACTATTACACTTCCTTCTTTGCAAAGGCTGACCAGAAGG 1139 ||||||||||||||||||||||||||||||||||||||||| ||||| ||| | | | | Sbjct 1027 CGACAGACTTCGTGGGAATAAACTATTACACTTCCTTCTTTTCAAAGACTGGC-A-A-GC 1083 Query 1140 TTGATAGTCGGAACCCGACTTGGGCTACAGATGCTCTAGTCGAATTTGAACCGAAGACTG 1199 ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 1084 CTGATAGTCGGAACCCAACTTGGGCTACAGATGCTCTAGCCGAATTTGAACCGAAGACTG 1143 Query 1200 TGGATGGATCCATTAAAATTGGTAGCCAGCCCAACACTGCTAAGATGGCTGTCTACGCTA 1259 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1144 TGGATGGATCCATTAAAATTGGTAGCCAGCCCAACACTGCTAAGATGGCTGTATACGCAA 1203 Query 1260 AGGGTTTGAGGAAGCTCATGAAATACATTAAGGACAGATACAACAGCCCTGAGATCATAA 1319 ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1204 AGGGTTTGAGGAAGCTCCTGAAATACATTAAGGACAGATACAACAACCCCGAGATCATAA 1263 Query 1320 TCACTGAGAATGGCTACGGGGAGGACCTTGGCGATAAAGATACAGATCTTAGCGTTGCTC 1379 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1264 TCACTGAGAATGGTTACGGGGAGGACCTTGGCGACAAAGATACAGATCTTAGCGTTGCTC 1323 Query 1380 TCAACGACCACAACAGGAAATACTATCTCCAGAGGCATCTTTTGGCACTGAATGAAGCTA 1439 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1324 TCAACGACCACAACAGGAAATACTATCTCCAGAGGCATCTTTTGGCCCTGAATGAGGCTA 1383 Query 1440 TATGTGAAGACAAGGTGAATGTTACATCGTATTTCTTGTGGTCTTTAATGGACAACTTCG 1499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1384 TATGTGAAGACAAGGTGAATGTTACATCGTATTTCTTGTGGTCTTTAATGGACAACTTCG 1443 Query 1500 AGTGGCAAGACGGGTACACAGCTAGGTTCGGAGTTTACTACATAGACTTCAAGAACAACT 1559 |||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||| Sbjct 1444 AGTGGCAAGATGGGTACACAGCAAGGTTCGGGGTTTACTACATCGACTTCAAGAACAACT 1503 Query 1560 TGACTCGTATGGAGAAAGAATCCGCAAAATGGCTTTCTGAATTCCTCAAACCAGGCCTGA 1619 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 1504 TGACTCGTATGGAGAAAGAATCTGCAAAATGGCTTTCTGAATTCCTCAAACCTGGCCTGA 1563 Query 1620 AACCATCTAAGTCCTCAAAGCTACACGAGGAGCTCTGAGTCGAGTTTCTTTGCAAGATCT 1679 |||||||||||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct 1564 AACCATCTAAGTCCTCGAAGCTCCATGAGGAGCTCTGAGTCGAGTTTCTCTGCAAGATCT 1623 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70962126435 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5