BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21370.1
Length=1889
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930094 jgi|Araly1|930094|scaffold_302551.1 2519 0.0
> Ahg930094 jgi|Araly1|930094|scaffold_302551.1
Length=1623
Score = 2519 bits (1364), Expect = 0.0
Identities = 1536/1620 (95%), Gaps = 7/1620 (0%)
Strand=Plus/Plus
Query 62 aaaaaaTCAACAATGAAGATTCCTCTCTTGGGGTTACTTTTACTAATAAGTCTTGTCGGC 121
||| |||||||||||||| ||||||| |||||||||||||| || ||||| ||||||||
Sbjct 9 AAAGAATCAACAATGAAGTTTCCTCTATTGGGGTTACTTTTGCTCCTAAGTATTGTCGGC 68
Query 122 TCTCCGACAAGGGCTGAAGAAGGACCTGTTTGCCCGAAGACCGAAACTCTTAGCCGTGCA 181
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 TCTACGACAAGGGCCGAAGAAGGACCTGTTTGCCCGAAGACCGAAACTCTTAGCCGTGCA 128
Query 182 AGTTTTCCGGAGGGCTTTATGTTTGGTACCGCAACCGCAGCCTTTCAGGTGGAAGGTGCA 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 AGTTTTCCGGAGGGCTTTATGTTTGGTACCGCAACCGCAGCCTTTCAGGTGGAAGGTGCA 188
Query 242 GTAAATGAAGGTTGCAGAGGTCCAAGCCTGTGGGACATCTACACCAAGAAATTTCCACAT 301
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 189 GTAAATGAAGGTTGCAGAGGTCCAAGCCTGTGGGATATCTACACCAAGAAATTTCCACAT 248
Query 302 AGAGTTAAGAATCACAATGCTGACGAGGCCGTCGATTTCTACCATCGCTACAAGGAGGAT 361
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 AGAGTTAAGAATCACAACGCTGACGAGGCCGTCGATTTCTACCATCGCTACAAGGAGGAT 308
Query 362 ATCCAGTTGATGAAAAAGCTGAACACTGATGGTTTTAGACTTTCTATTTCGTGGCCAAGA 421
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 309 ATCCAGTTGATGAAAAAGCTGAACACTGATGGTTTTAGACTTTCCATTTCGTGGCCAAGA 368
Query 422 ATATTTCCTCATGGGAGGATGGAGAAAGGAATAAGCAAAGAAGGAGTTCAATTTTACCAC 481
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 369 ATATTTCCTCATGGGAGGATGGAGAAAGGAATCAGCAAAGAAGGGGTTCAATTTTACCAT 428
Query 482 GATCTTATTGATGAGCTCCTTAAAAATGACATAACACCATTAGTAACGGTTTTTCATTGG 541
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 429 GATCTTATAGATGAGCTCTTTAAAAATGACATAACACCATTAGTAACGGTTTTTCATTGG 488
Query 542 GATACTCCCGCCGATTTGGAAGATGAATACGGTGGCTTTTTAAGCGAACGTATTGTGCCT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GATACTCCCGCCGATTTGGAAGATGAATACGGTGGCTTTTTAAGCGAACGTATTGTGCCT 548
Query 602 GATTTTGTGGAGTATGCAAACTTCACGTTCCACGAGTATGGGGACAAAGTGAAAAACTGG 661
|||||||||||||| ||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 549 GATTTTGTGGAGTACGCAAACTTCACGTTCCACGAGTACGGAGACAAAGTGAAACACTGG 608
Query 662 ATTACGTTCAACGAGCCATGGGTCTTTAGCCGTTCGGGCTACGACGTTGGGAAGAAAGCA 721
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 609 ATTACGTTCAACGAGCCATGGGTCTTTAGCCGTTCGGGCTACGACGTTGGAAAGAAAGCA 668
Query 722 CCAGGACGTTGTTCTCCTTACGTCAAAGAGTTTGGAAAGCTTTGTCAAGATGGACGGTCA 781
|| |||||||||||||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct 669 CCCGGACGTTGTTCTCCTTACGTCAAAGACTTTGGACATCTTTGTCAAGATGGACGGTCT 728
Query 782 GGATTCGAACCTTATGTTGTCAGTCACAATTTACTCGTGGGTCATGCTGAAGCTGTTGAT 841
||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 729 GGATTCGAAGCTTATGTCGTCAGTCACAATTTACTTGTGGGTCATGCTGAAGCTGTTGAT 788
Query 842 GCTTTCCGAAAATGCGAAAAGTGCAAAGGTGGTAAAATCGGAATCGCTCATAGTCCAGCT 901
|||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||
Sbjct 789 GCTTTCCGAAAATGCGAAAAATGCAAAGGTGGTAAAATCGGGATTGCTCATAGTCCGGCT 848
Query 902 TGGTTTGAACCCGAAGATGTGGAAGGAGGTCAAGCGACTG-TAAACCGTGTGCTTGATTT 960
||||||||||| ||||||||||| ||||||||| | || ||||||||||||| |||||
Sbjct 849 TGGTTTGAACCGGAAGATGTGGAGGGAGGTCAAAATA-TGGTAAACCGTGTGCTAGATTT 907
Query 961 CGTCATTGGCTGGCATTTGGATCCTACCACGTTCGGGGACTATCCTCAGTCTATGAAAGA 1020
| |||||||||||||||||||||||||||||| ||| || ||||| ||||||||||||||
Sbjct 908 CATCATTGGCTGGCATTTGGATCCTACCACGTACGGAGATTATCCACAGTCTATGAAAGA 967
Query 1021 CGCGGTTGGATCTCGGTTGCCAAGATTTACCAAA-GCCCAAAAGGCAAAACTGAAAGATT 1079
| |||||| ||||||| ||||||||||| ||| || ||||||||||||||||||||||
Sbjct 968 TACAGTTGGAACTCGGTTACCAAGATTTAC-AAATGCTCAAAAGGCAAAACTGAAAGATT 1026
Query 1080 CGACAGACTTCGTGGGAATAAACTATTACACTTCCTTCTTTGCAAAGGCTGACCAGAAGG 1139
||||||||||||||||||||||||||||||||||||||||| ||||| ||| | | | |
Sbjct 1027 CGACAGACTTCGTGGGAATAAACTATTACACTTCCTTCTTTTCAAAGACTGGC-A-A-GC 1083
Query 1140 TTGATAGTCGGAACCCGACTTGGGCTACAGATGCTCTAGTCGAATTTGAACCGAAGACTG 1199
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1084 CTGATAGTCGGAACCCAACTTGGGCTACAGATGCTCTAGCCGAATTTGAACCGAAGACTG 1143
Query 1200 TGGATGGATCCATTAAAATTGGTAGCCAGCCCAACACTGCTAAGATGGCTGTCTACGCTA 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1144 TGGATGGATCCATTAAAATTGGTAGCCAGCCCAACACTGCTAAGATGGCTGTATACGCAA 1203
Query 1260 AGGGTTTGAGGAAGCTCATGAAATACATTAAGGACAGATACAACAGCCCTGAGATCATAA 1319
||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1204 AGGGTTTGAGGAAGCTCCTGAAATACATTAAGGACAGATACAACAACCCCGAGATCATAA 1263
Query 1320 TCACTGAGAATGGCTACGGGGAGGACCTTGGCGATAAAGATACAGATCTTAGCGTTGCTC 1379
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1264 TCACTGAGAATGGTTACGGGGAGGACCTTGGCGACAAAGATACAGATCTTAGCGTTGCTC 1323
Query 1380 TCAACGACCACAACAGGAAATACTATCTCCAGAGGCATCTTTTGGCACTGAATGAAGCTA 1439
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1324 TCAACGACCACAACAGGAAATACTATCTCCAGAGGCATCTTTTGGCCCTGAATGAGGCTA 1383
Query 1440 TATGTGAAGACAAGGTGAATGTTACATCGTATTTCTTGTGGTCTTTAATGGACAACTTCG 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 TATGTGAAGACAAGGTGAATGTTACATCGTATTTCTTGTGGTCTTTAATGGACAACTTCG 1443
Query 1500 AGTGGCAAGACGGGTACACAGCTAGGTTCGGAGTTTACTACATAGACTTCAAGAACAACT 1559
|||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 1444 AGTGGCAAGATGGGTACACAGCAAGGTTCGGGGTTTACTACATCGACTTCAAGAACAACT 1503
Query 1560 TGACTCGTATGGAGAAAGAATCCGCAAAATGGCTTTCTGAATTCCTCAAACCAGGCCTGA 1619
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1504 TGACTCGTATGGAGAAAGAATCTGCAAAATGGCTTTCTGAATTCCTCAAACCTGGCCTGA 1563
Query 1620 AACCATCTAAGTCCTCAAAGCTACACGAGGAGCTCTGAGTCGAGTTTCTTTGCAAGATCT 1679
|||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 1564 AACCATCTAAGTCCTCGAAGCTCCATGAGGAGCTCTGAGTCGAGTTTCTCTGCAAGATCT 1623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70962126435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5