BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21390.1
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342288 jgi|Araly1|342288|fgenesh1_pg.C_scaffold_3002051 1266 0.0
> Ahg342288 jgi|Araly1|342288|fgenesh1_pg.C_scaffold_3002051
Length=930
Score = 1266 bits (685), Expect = 0.0
Identities = 739/766 (96%), Gaps = 0/766 (0%)
Strand=Plus/Plus
Query 473 GGGTTTCTGGCGTGGAAATGTTCCAGCTTTACTTATGGTTGTGCCTTATACATCCATACA 532
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 165 GGGTTTTTGGCGTGGAAATGTCCCAGCTTTACTTATGGTTGTGCCTTATACATCCATACA 224
Query 533 ATTTGCAGTCTTACATAAGGTGAAGTCTTTTGCCGCTGGTTCATCAAAGGCCGAAAATCA 592
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 ATTTGCAGTTTTACATAAGGTGAAGTCTTTTGCCGCTGGTTCATCAAAGGCCGAAAATCA 284
Query 593 TGCTCAACTGAGCCCTTATCTTTCTTACATCAGTGGGGCACTAGCAGGGTGTGCAGCAAC 652
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 285 TGCTCAACTGAGCCCTTATCTTTCATACATTAGCGGGGCACTAGCAGGGTGTGCAGCAAC 344
Query 653 AGTTGGATCGTATCCGTTTGACCTATTGCGGACTGTATTGGCGTCCCAGGGTGAGCCAAA 712
||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 345 AGTTGGATCGTATCCATTTGACCTATTGCGGACTGTATTAGCTTCCCAGGGTGAGCCAAA 404
Query 713 GGTGTATCCAAATATGAGGTCAGCATTTCTGAGTATAGTGCAAACTCGTGGAATCAAAGG 772
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GGTATATCCAAATATGAGGTCAGCATTTCTGAGTATAGTGCAAACTCGTGGAATCAAAGG 464
Query 773 GTTGTATGCAGGATTGTCCCCTACTCTGATCGAGATCATTCCTTATGCTGGTCTGCAGTT 832
||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||
Sbjct 465 GTTGTATGCAGGATTGTCCCCAACTTTGATCGAGATAATTCCTTATGCTGGTCTGCAGTT 524
Query 833 TGGCACCTATGACACATTTAAACGCTGGAGTATGGTATATAATAAGCGATACCGATCTTC 892
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 525 CGGCACTTATGACACATTTAAACGCTGGAGTATGGTATATAATAAGCGATACCGATCATC 584
Query 893 TTCATCAAGCTCAACGAATCCAAGTGATAGTCTTTCTAGCTTTCAGCTTTTCCTTTGCGG 952
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 585 TTCATCAAGCTCAACGAATCCAAGTGATAGTCTTTCTAGCTTTCAGCTCTTCCTTTCCGG 644
Query 953 TTTAGCTTCGGGCACTGTTTCTAAACTAGTCTGTCATCCGCTTGATGTTGTCAAGAAAAG 1012
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TTTAGCTTCTGGCACTGTTTCTAAACTAGTCTGTCATCCGCTTGATGTTGTCAAGAAAAG 704
Query 1013 ATTCCAGGTCGAAGGTCTGCAACGTCACCCAAAATATGGAGCCCGAGTAGAGCTGAATGC 1072
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 705 ATTCCAAGTCGAAGGTCTGCAACGTCACCCAAAATATGGAGCCCGAGTAGAGCTAAATGC 764
Query 1073 TTACAAGAACATGTTTGACGGTTTAGGGCAGATATTAAGATCTGAAGGTTGGCACGGGCT 1132
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 765 TTACAAGAACATGTTTGACGGTTTAGGGCAGATATTAAGATCAGAAGGTTGGCACGGCCT 824
Query 1133 TTATAAAGGCATTGTTCCATCAACCATTAAAGCTGCACCTGCTGGTGCTGTAACATTTGT 1192
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 825 CTACAAAGGCATTGTTCCATCAACCATCAAAGCTGCACCTGCTGGTGCTGTAACATTTGT 884
Query 1193 GGCCTATGAACTTGCATCCGATTGGTTTGAGGCAAATTTGACCTGA 1238
|||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 885 GGCCTATGAACTTGCATCCGATTGGTTTGAGGCAAATTTGACATGA 930
Score = 239 bits (129), Expect = 5e-62
Identities = 147/156 (94%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 208 GTTATAGCAAGGAGCTCGTGATCATGAGTGGTACAGAGTTAGATGAGCCTGGAAAGTTAA 267
|||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 11 GTTATAGCAAGGAGCTGGTGATCATGAGTGGTACAGAGTTAGAAGAGCCTGGACAGTTAA 70
Query 268 AACGTGCTGTCATTGATGCTTCTGCTGGTGGTGTTGCTGGTGCGATTTCACGTATGGTTA 327
|||||||||| || |||||||| ||||||| |||||||||||| ||||||||||||||||
Sbjct 71 AACGTGCTGTGATAGATGCTTCAGCTGGTGCTGTTGCTGGTGCCATTTCACGTATGGTTA 130
Query 328 CCTCTCCCCTTGATGTTATCAAGATTAGATTTCAGG 363
||||||| ||||||||||||||||||||||||||||
Sbjct 131 CCTCTCCTCTTGATGTTATCAAGATTAGATTTCAGG 166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50779725444
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5