BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21400.1
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930098 jgi|Araly1|930098|scaffold_302555.1 905 0.0
> Ahg930098 jgi|Araly1|930098|scaffold_302555.1
Length=612
Score = 905 bits (490), Expect = 0.0
Identities = 572/611 (94%), Gaps = 8/611 (1%)
Strand=Plus/Plus
Query 199 GTGTGTGTTTTTGCGGTGATGGGTCAGCAATTGCGTCGAGCTGTTGGGAAAATCAAAGAA 258
|||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 5 GTGTGTGTTTCTGCGGTAATGGGTCAGCAATTTCGTCGAGCTGTTGGGAAAATCAAAGAA 64
Query 259 GTTGAGAGATCATCACCATCAAGAGTC-TCCATTGATCGGAGATCGCTTCCTACGGAGGA 317
||||||||||||||||||||||| ||| || ||||||||||||||||||| ||||||||
Sbjct 65 GTTGAGAGATCATCACCATCAAGGGTCGTCG-TTGATCGGAGATCGCTTCCAACGGAGGA 123
Query 318 GCTCAGTGCCGTGAAATCGTC-TC-C-GTCTACTGCCGCCGTTGATGGAGTTTCTGATAA 374
|||||| ||||||||||| || || | |||||||||||||||||||| |||||||| ||
Sbjct 124 GCTCAGCGCCGTGAAATCATCATCTCCGTCTACTGCCGCCGTTGATGTTGTTTCTGAGAA 183
Query 375 AGGTCGAAGAACCAGTGAGGATAATGTTTTAGAGGAACGAGACCCCAAGTATGATACAAT 434
||||||||||||||||||||||||||||||||||||| |||| || || |||||||||||
Sbjct 184 AGGTCGAAGAACCAGTGAGGATAATGTTTTAGAGGAAAGAGATCCGAAATATGATACAAT 243
Query 435 GTTGAACCAAATGGTTGGGAGAATAAAAGCTAAACCTGGAGGCAAAGCTGAGATGGGAGA 494
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 244 GTTGAACCAAATGGTTGGGAGAATTAGAGCTAAACCTGGAGGCAAAGCTGAGATGGGAGA 303
Query 495 GGCATCAGTAGTTGAGACATCGAAAAGGCCACTCCCAAAGCTCCGGAACACAACTCCTGA 554
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 304 GGCATCAGTAGTTGAAACATCAAAAAGGCCACTCCCAAAGCTCCGGAACACAACTCCTGA 363
Query 555 ATCAACAAGATATGAGGAAAACCCGGTGCCTCAAGGAACGTTGAACGTAGCACAAGTGCG 614
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 364 ATCAACAAGATATGAGGAAAACCCGGTGCCTCAAGGAACATTGAACGTAGCACAAGTGCG 423
Query 615 ACACATCATGCTTCTCTTTCAGGGAAAATCTCAGGATCACCATGGTCCAATGGGTGTTAA 674
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 424 ACACATCATGCTTCTCTTTCAGGGAAAAGCTCAGGATCACCATGGTCCAATGAGTGTTAA 483
Query 675 CGAGATAGCTGAAAAATACCGGATTGATGTCTCTCAGGTTCAGAAGATCACTCAGTTCCT 734
| ||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 484 CCAGATAGCTGAAAAGTACCGGATCGATGTCTCTCAGGTACAGAAGATCACCCAGTTCCT 543
Query 735 GTCTTTACCT-CAAGAGATTACTGATAAGCAGAAGAAACAATATGAATAAAAAAGTAAAG 793
||||| ||| || ||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 544 CTCTTTGCCTACA-GAGGTTACTGATAAGCAGAAGAAACAATATGAATAAAAA-GTAAAG 601
Query 794 GCTCTGTTCGT 804
||| |||||||
Sbjct 602 GCTATGTTCGT 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36178648233
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5