BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21410.1
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342290 jgi|Araly1|342290|fgenesh1_pg.C_scaffold_3002053 1570 0.0
> Ahg342290 jgi|Araly1|342290|fgenesh1_pg.C_scaffold_3002053
Length=1143
Score = 1570 bits (850), Expect = 0.0
Identities = 1055/1153 (92%), Gaps = 17/1153 (1%)
Strand=Plus/Plus
Query 88 ATGGATTCCAAAGAATGTTCATTGTTGCCTTTTGAGTTATTTGAAGAAATACTTTGTAGG 147
|||||||||||||| |||||||||||||||| ||| |||| |||||||||||||||| |
Sbjct 1 ATGGATTCCAAAGAGTGTTCATTGTTGCCTTCTGAATTATGTGAAGAAATACTTTGTCGA 60
Query 148 GTTCCAACTAAATCTCTTTTACGACTCAAGTTGACGTGCAAACGATGGCTCGCTCTTTT- 206
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 GTTCCAACTAAATCTCTTATACGACTCAAGTTAACGTGCAAACGATGGCTCGCTCTTTTC 120
Query 207 CAACGACAAGAGATTCATTTACAAGCACTTAGCTCTTGTTCGGGAACATATCATAAGGAC 266
||| |||||||| |||||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 121 CAA-GACAAGAGGTTCATTTACAAGCACTTAGCTCTTCTTCAAGAACATATCATAAGAAC 179
Query 267 CAATCAAATGGTTAAGATCATCAACCCGGTAGTTGGAGCTTGCTCATCTTTTTCACTTCC 326
|||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 180 CAATCATATGGTTAAGATCATCAACCCGGTAATTGGAGCTTGCTCATCTTTATCACTTCC 239
Query 327 TAACAAGTTTCAAGTGAAAGGTGAGATTTATACTATGGTTCCCTGCGACGGGTTATTGTT 386
|||| |||||||||| | |||||| |||||||||||||||| ||||||||| ||||||||
Sbjct 240 TAACGAGTTTCAAGTTAGAGGTGACATTTATACTATGGTTCACTGCGACGGATTATTGTT 299
Query 387 ATGCATTTTCGAAACAGGTTCAATGGCAGTTTGGAACCCATGTTTGAACCAGGTTAGATG 446
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 300 ATGCATTTTCGAATCAGGTTCAATGGCAGTTTGGAACCCATGTTTGAACCAGCTTAGATG 359
Query 447 GATCTTTCTCC-TGAATCCTTCTTTCCGGGGTTGTAGTTGCTACGGCATTGGATATGACG 505
|||| | || ||| | |||||| | ||| | | | ||||||||||||||||| |||
Sbjct 360 GATCAAGC-CCTTGACTTCTTCTTACAAGGG-T-T-GCTGCTACGGCATTGGATACGACT 415
Query 506 GTTTATCTCGGGATAGCTACAAAATCTTGAGGTTCGTAAACGGTGTTTTTACCAAAAACG 565
|||| ||||| |||| |||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 416 GTTTGTCTCGAGATAACTACAAAATCTTGAAGTTCGTAAACGGTGCTTTTACGAAAAACG 475
Query 566 AGTATGCAAATACGGGCTCTTACAAACCAGAGGTTGATATTTATGAATTAAAGTCTAATT 625
|||||||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||
Sbjct 476 AGTATGCAAATACGGGATCTTACAAACCAGAAGTTGACATCTATGAGTTCAAGTCTAATT 535
Query 626 CTTGGAAAACTTTTAAAGTTTCTTTGGATTGGCATGTGGTTTTGCGTTGTAAAGGTTTGT 685
||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||
Sbjct 536 CTTGGAAAACTTTTAAAGTTTCTTTGGATTGGCATGTGGTTACGCATTGTAAAGGTGCGT 595
Query 686 CACTCAAAGGAAACATGTATTGGATTGCTAAATGGAACCGTAAACCCGACATCTTCATCC 745
|||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||
Sbjct 596 CACTCAAAGGAAACATGTATTGGATTTCTAAATGGAATCGTAAACCCGATATCTTCATCC 655
Query 746 AAAGCTTTAACTTCTCTACAGAGACATTTGAGCCCTTGTG--CT-CTCTTCCCGTTAG-G 801
|||| ||||||||||||||||||||||| ||||| ||||| || |||||||| || | |
Sbjct 656 AAAGTTTTAACTTCTCTACAGAGACATTCGAGCCATTGTGCACTACTCTTCCC-TTTGAG 714
Query 802 TAT-GATGTACATAATGTTGTAGCTTTATCAGCTTTCAAAGGAGACAATCTTTCTTTGTT 860
||| || ||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 715 TATAGA-GTATGTGATGTTGTAGCTTTATCAGCTTTCAGAGGAGACAATCTTTCTTTGTT 773
Query 861 ACACCAAAGCAAAGAAACATCAAAGATCGATGTATGGGTTACTAACAAGGTTAAGAACGG 920
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 774 ACACCAAAGCAAAGAAACATCAAAGATCGAGGTATGGGTTACGAACAAGGTTAAGAACGG 833
Query 921 AGTGAGTATCTTATGGACCAAGTTATTTAGTGTGACAAGACCTGATCTCCCGGTATTGCT 980
||||||||||| |||||||||||| |||| |||||||||| ||||||||||||| ||| |
Sbjct 834 AGTGAGTATCTCATGGACCAAGTTCTTTATTGTGACAAGATCTGATCTCCCGGTGTTGGT 893
Query 981 GGCTTTTGAGAATCTTTCTTATCCGGTGCATTTCATTGATAAGAATAATAGGATCGTAGT 1040
||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 894 GGCTTCTGAGAATATTTCTTATCCGGTGCATTTCATTGATAAGAATAATAGGATTGTAGT 953
Query 1041 ATGTTGTGAGGAAGTATTGGCAGATAAAAGAAACGTAGCCGTCAACATCTACGTTATTGG 1100
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 954 ATGTTGTGAGGAAGTATTGGCAGATAGGAGAAACGTAGCCGTCAACATCTACGTTATTGG 1013
Query 1101 AGAGGATGAGATCAAAAGCCAAGATGAGATAGAACAACACCAACTAGGTTTTAGTTGGCC 1160
|||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||
Sbjct 1014 AGAGGATGAGATCAAAAGCCAAGATGAGATAGAACAGCATCAAATAGGTTTTAGTTGGCC 1073
Query 1161 TTTTATCTCCGGCTATACATATCTTCCAAGTCTTGTTCCGGTTCCATCATCGGAGGATAA 1220
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TTATATCTCCGGCTATGCATATCTTCCAAGTCTTGTTCCGGTTCCATCATCGGAGGATAA 1133
Query 1221 TACACCAGAATAA 1233
|| || ||||||
Sbjct 1134 -AC-CC-GAATAA 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46052483736
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5