BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21450.1
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932682 jgi|Araly1|932682|scaffold_400670.1 717 0.0
Ahg318885 jgi|Araly1|318885|fgenesh1_pm.C_scaffold_3001901 623 6e-178
> Ahg932682 jgi|Araly1|932682|scaffold_400670.1
Length=1054
Score = 717 bits (388), Expect = 0.0
Identities = 563/644 (87%), Gaps = 25/644 (4%)
Strand=Plus/Plus
Query 184 ATCCAACATAAAAATTTGGTTAATCTGCTCGGTTATTGTTGCGACGACGAGAACCAATCG 243
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 402 ATCCAACATAGAAATTTGGTTAATCTGCTCGGTTATTGTTGCGACGACGAGAACCAATTG 461
Query 244 CTCGTCTTTGAGTATATGGTCAACGGTAGCGTCCGAGATTATCTAGA-G--TCTAGCGAC 300
|||||||||||||||||||||||||||||||| |||||||||||||| | ||||| |||
Sbjct 462 CTCGTCTTTGAGTATATGGTCAACGGTAGCGTGCGAGATTATCTAGATGCCTCTAGGGAC 521
Query 301 TTAACGTTCAAGAAAAGAATATCTATAGCTCTTGATGCAGCCAAAGGGTTACTACACTTG 360
||||| ||||||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct 522 TTAACATTCAAGAAAAGGATTTCCATAGCTCTTGATGCAGCCAAAGGGTTGCTACACTTG 581
Query 361 CACAACTTAGATCCTCCAGTACAACACAAGAGATTTACGGCGAGTAAAGTTTTGCTCGAT 420
||||||||||||||||| ||||||||||||||||||||| || |||||||||||| |||
Sbjct 582 CACAACTTAGATCCTCCGGTACAACACAAGAGATTTACGACGTCTAAAGTTTTGCTTGAT 641
Query 421 GCCAACCTCAATGCCAAGGTATCAGATGG-GGCAATGTTGGGACTGCTTCAAGCAAGTGA 479
||| ||||||||||||||||||||||| || |||||||||||||||| ||||| ||||
Sbjct 642 GCCGACCTCAATGCCAAGGTATCAGATCCAGG-AATGTTGGGACTGCTTGAAGCACGTGA 700
Query 480 TATTCATCTCGCTAATCCAAGAGGTGGTTCAGAGGAGACAATTGATGTGTATAGCTTCGG 539
| ||| ||| | ||||||||||||||||| || |||||| |||||||| | |||||||||
Sbjct 701 TCTTCGTCTAGTTAATCCAAGAGGTGGTTTAGCGGAGACCATTGATGTTTTTAGCTTCGG 760
Query 540 GTTGTTCCTTCTAGAGCTTATCACCTGTCAAAACCCTGGAC-TGTTACAATCAGACTATG 598
||||||||||||||||||||||||| || |||| |||| | |||| ||||| || | |
Sbjct 761 GTTGTTCCTTCTAGAGCTTATCACCGGTGAAAAACCTG-ATGTGTTTGAATCAAACGAAG 819
Query 599 AAGTT-TTACAATGGAATA-TACCTGCAGAAACATTCACGAGACCATCGTTCCAAGC-TT 655
|| || || ||||||| || | || | |||| ||||| ||| |||||||| |||| ||
Sbjct 820 AAATTGTT-CAATGGA-TACTTCC-G-AGAATG-TTCACTAGATCATCGTTC-AAGCCTT 873
Query 656 ATCTGATA-ATTACGTCGGAATGCTTGGAAT-ATCCCCCGATAAATCGCCCAAAGATGGA 713
|| ||| | ||||||| |||||||||| ||| ||||| | ||| ||||||||||||||||
Sbjct 874 ATATGA-AGATTACGTTGGAATGCTTG-AATTATCCCGCAATAGATCGCCCAAAGATGGA 931
Query 714 TGTGGTCGTGACCGAGCTTGAGACGATTTACCTTAATG---TCATCAGTGA-GAACCATG 769
|||||| ||||||||||||||||||||||||| |||| || ||||||| || || ||
Sbjct 932 TGTGGTTGTGACCGAGCTTGAGACGATTTACCAGAATGAAGTCTTCAGTGAAGA-CCGTG 990
Query 770 AGGTTTCTCTAGGAAGTGAGCTTTTTAACATAACCATTGAGTAA 813
|||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 991 GGGTTGCTCTAGGAAGTGAGCTTTTTAACATTACCATTGAGTAA 1034
Score = 211 bits (114), Expect = 6e-54
Identities = 147/163 (90%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAATTAAGGCAAGCAACGAACAATTTTGACATGGATAATACTATTGGGCATGGA 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 156 ATGGAGGAATTAAGGCAAGCAACGAACAATTTTGACATGGCTAATACTATTGGGCTTGGA 215
Query 61 AGTCACGGAACAGTTTACACTGGGCTGATCA-AGGACATGCCCGTTGTGATCAAAAGGGA 119
||| ||||| |||||| |||||||||||| || ||| | ||||||||||||||||||
Sbjct 216 AGTTACGGAGTAGTTTATACTGGGCTGATCGGAG-ACAAGATCGTTGTGATCAAAAGGGA 274
Query 120 GTGGTGTAGTCCCCAACCTAGATTCTTGGATGAGGTACACACA 162
||||||| ||| ||||||||||||||||| ||||||| |||||
Sbjct 275 GTGGTGTGGTCTCCAACCTAGATTCTTGGCTGAGGTATACACA 317
> Ahg318885 jgi|Araly1|318885|fgenesh1_pm.C_scaffold_3001901
Length=1002
Score = 623 bits (337), Expect = 6e-178
Identities = 537/628 (86%), Gaps = 36/628 (6%)
Strand=Plus/Plus
Query 1 ATGGAGGAATTAAGGCAAGCAACGAACAATTTTGACATGGATAAT-A-C-TATTGGGCAT 57
|||||||||||||||||||||||||||||||| ||| |||||||| | | | ||||| |
Sbjct 157 ATGGAGGAATTAAGGCAAGCAACGAACAATTTCGACCTGGATAATAATCATCTTGGGTTT 216
Query 58 GGAAGTCACGGAACAGTTTACACTGGGCTGATCAAG-GACATGCCCGTTGTGATCAAAAG 116
||| || ||||| |||||| |||||||||||| | |||| | ||||| |||||||||
Sbjct 217 GGATGTTACGGATTAGTTTATACTGGGCTGATC-GGAGACAGGATCGTTGCGATCAAAAG 275
Query 117 GGAGTGG-TGT-AGTCCCCAACCTAGATTCTTGGATGAGGTACACACAAACAAAAAATTG 174
||||||| | | | || ||| |||||||||||||||||||| | || | |
Sbjct 276 GGAGTGGCT-TCA-TCTCCAGCCTAGATTCTTGGATGAGGT---TTCTTAC-----A-T- 323
Query 175 GTTTCTTACATCCAACATAAAAATTTGGTTAATCTGCTCGGTTATTGTTGCGACGACGAG 234
| ||| | ||||| ||| ||||||||||||||||| |||||||||||||||| || | |
Sbjct 324 G--TCTAAAATCCAGCATGAAAATTTGGTTAATCTGATCGGTTATTGTTGCGAAGAAGGG 381
Query 235 AACCAATCGCTCGTCTTTGAGTATATGGTCAACGGTAGCGTCCGAGATTATC-T--AGAG 291
||||||| |||||||||||||||||||||||| |||| ||| |||||||||| | ||
Sbjct 382 AACCAATTGCTCGTCTTTGAGTATATGGTCAAGGGTAACGTGCGAGATTATCTTGGTGAT 441
Query 292 TCTAGCGACTTAACGTTCAAGAAAAGAATATCTATAGCTCTTGATGCAGCCAAAGGGTTA 351
||||| ||||| |||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 442 TCTAGTGACTTCACGTTCAAGAAAAGGATATCTGTAGCTCTTGATGCAGCCAAAGGGTTG 501
Query 352 CTACACTTGCACAACTTAGATCCTCCAGTACAACACAAGAGATTTACGG-CGAGTAAAGT 410
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 502 CTACACTTGCACAACTTAGATCCTCCAGTACAACACAAGAGATTTA-GGACGGGTAAAGT 560
Query 411 TTTGCTCGATGCCAACCTCAATGCCAAGGTATCAGATG-GGGCAATGTTGGGACTGCTTC 469
|||||| |||||| ||||||||||||||||||| |||| ||| |||||||||||||||||
Sbjct 561 TTTGCTTGATGCCGACCTCAATGCCAAGGTATCGGATGCGGG-AATGTTGGGACTGCTTC 619
Query 470 AAGCAA-GTGATATTCATCTCGCT-AATCCAAGAGGTGGTTCAGAGGAGACAATTGATGT 527
||| | ||||| ||| |||| || |||||||||||||||| ||||||||| ||||||||
Sbjct 620 AAG-ATCGTGATCTTCGTCTC-CTTAATCCAAGAGGTGGTTTAGAGGAGACCATTGATGT 677
Query 528 GTATAGCTTCGGGTTGTTCCTTCTAGAGCTTATCACCTG-TCAAAACCCTGGACTGTTAC 586
|||||||||||||||||||||||||||||||||||| || | |||| |||||||||||||
Sbjct 678 GTATAGCTTCGGGTTGTTCCTTCTAGAGCTTATCAC-TGGTGAAAAACCTGGACTGTTAC 736
Query 587 AATCAGAC-TATGAAGTTTTACAATGGA 613
||||| || | |||| || | |||||||
Sbjct 737 AATCA-ACCTTTGAAATTATGCAATGGA 763
Score = 174 bits (94), Expect = 8e-43
Identities = 172/207 (83%), Gaps = 16/207 (8%)
Strand=Plus/Plus
Query 613 AATATACCTGCAGAAACATTCACGAGACC-ATCGTTCCAAGCTTATCTGATA-ATTACGT 670
||||| |||| | ||| ||||||| ||| |||||| | |||||| ||| | ||||| |
Sbjct 802 AATATGCCTG--G-AACGTTCACGA-ACCAATCGTTGGAGGCTTATATGA-AGATTAC-T 855
Query 671 -CGGAATGCTTGGA-ATATCCCCCGATAAATCGCCCAAAGATGGATGTGGTCGTGACCGA 728
|||||||| || ||||||| ||||| ||||||| ||||||||| |||| ||||||||
Sbjct 856 ATAGAATGCTT-GACATATCCCGCGATAGATCGCCCGAAGATGGATATGGTTGTGACCGA 914
Query 729 GCTTGAGACGATTTACCTTAAT---GTCATCAGTG-AGAACCATGAGGTTTCTCTAGGAA 784
||||||||||||||||| ||| ||||||| || || | ||||||||| |||||||||
Sbjct 915 GCTTGAGACGATTTACCAGAATGAAGTCATCAATGAAG-AGCATGAGGTTGCTCTAGGAA 973
Query 785 GTGAGCTTTTTAACATAACCATTGAGT 811
||||||||||||||||||||||| |||
Sbjct 974 GTGAGCTTTTTAACATAACCATTCAGT 1000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30040858596
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5