BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21460.1
Length=575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479665 jgi|Araly1|479665|fgenesh2_kg.3__2366__AT3G21460.1 883 0.0
> Ahg479665 jgi|Araly1|479665|fgenesh2_kg.3__2366__AT3G21460.1
Length=547
Score = 883 bits (478), Expect = 0.0
Identities = 525/547 (96%), Gaps = 6/547 (1%)
Strand=Plus/Plus
Query 1 AAAACAAACTCATCAAAACAACATTAAATCTCCAATCACTTCAAAG-AAA-ATA-ATATA 57
||||||||||||||||||||| ||||||||||||| |||||||||| ||| | | |||||
Sbjct 1 AAAACAAACTCATCAAAACAAAATTAAATCTCCAACCACTTCAAAGAAAAGAAATATATA 60
Query 58 CATACCAAAAGAGTATTACTATACAAATGGATGTGGTAGCAAGATTAGCGTCGCAAAGAG 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATACCAAAAGAGTATTACTATACAAATGGATGTGGTAGCAAGATTAGCGTCGCAAAGAG 120
Query 118 CGGTGGTGATATTCAGCAAGAGTACGTGTTGCATGTCTCATGCAATTAAACGGTTGTTTT 177
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGTGGTGATATTCAGCAAGAGTACGTGTTGCATGTCTCATGCAATTAAACGGTTGTTTT 180
Query 178 ACGAGCAAGGTGTGAGCCCGGCAATTGTAGAGATCGACCAAGACATGTATGGGAAAGATA 237
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 ACGAGCAAGGTGTGAGCCCGGCGATTGTAGAGATCGACCAAGACATGTATGGGAAAGATA 240
Query 238 TCGAGTGGGCCTTGGCCCGATTAGGCTGTAGCCCTACGGTTCCTGCGGTTTTTGTTGGAG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 TCGAGTGGGCCTTGGCCCGATTAGGCTGTAGCCCTACGGTTCCTGCGGTTTTTGTCGGAG 300
Query 298 GGAAATTCGTAGGAACGGCCAATACTGTCATGACTCTTCATCTCAATGGATCATTGAAAA 357
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 301 GGAAATTCGTAGGAACGGCCAATACCGTCATGACTCTTCATCTCAATGGATCGTTGAAAA 360
Query 358 TATTGCTCAAGGAGGCTGGTGCTTTGTGGCTTTAGCACTCGTTTGATCTTTACTTTGAC- 416
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 361 TGTTGCTCAAGGAGGCTGGTGCTTTGTGGCTGTAGCACTCATTTGATCTTTACTTTGAGT 420
Query 417 CTTTGAAAGTCTCTTCACTTTATGTACGTTTAATTAAAGCATATGTGAAGAGGAACTACT 476
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 CTTTGAAAGTCTCTTCACTTTATGTACGTTTAATTAAAGCATATGTGAAGAAGAACTACT 480
Query 477 TTGTATTGAGAGTAATTAAATAT--GTCTATGTGGAGGTTGATTTAATGATTAACTATAA 534
||||||||||||| ||||||||| |||||||||||||||||||||| ||| ||||||||
Sbjct 481 TTGTATTGAGAGTTATTAAATATATGTCTATGTGGAGGTTGATTTAAGGATCAACTATAA 540
Query 535 CCCATTA 541
|||||||
Sbjct 541 CCCATTA 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21023729539
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5