BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21465.1
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905172 jgi|Araly1|905172|Al_scaffold_0003_2300 1720 0.0
> Ahg905172 jgi|Araly1|905172|Al_scaffold_0003_2300
Length=1164
Score = 1720 bits (931), Expect = 0.0
Identities = 1103/1181 (93%), Gaps = 31/1181 (3%)
Strand=Plus/Plus
Query 31 ATGCAATATCTATCGCACTCTCGTAGAATCGCTCGGGCTTTGAAACCACTAGCTCTCGTC 90
||||||||||||||||||||||||||||||||| ||| || |||||| |
Sbjct 1 ATGCAATATCTATCGCACTCTCGTAGAATCGCTAGGG---TG---------GCTCTCATG 48
Query 91 GAGACCGATGTGAGATTTGTATCCAATGCTCCTTCTCATGTTGTT------------CAT 138
|||||||||||||||||||||| ||||| || |||||||||||| |||
Sbjct 49 GAGACCGATGTGAGATTTGTATACAATG--CC-TCTCATGTTGTTCAACGGCCGAGCCAT 105
Query 139 CGATCTCTTTCCCACTCTGTATTTCCAGGAAAAATGGATACTTGTAATCAGTTATATGCT 198
|||||||||||||||||||||||||||||||||||||||||||| | |||||| || |||
Sbjct 106 CGATCTCTTTCCCACTCTGTATTTCCAGGAAAAATGGATACTTGCAGTCAGTTGTACGCT 165
Query 199 CAATCACCTATGACGGGGTTGATGATGTTGAGAGCTAACTTCT-CCTCTGAAGCAAAACA 257
||||||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||
Sbjct 166 CAATCACCTATGACGGGGTTGATGATGCTGAGAGCTAACTT-TACCTCTGAAACAAAACA 224
Query 258 TGTTGAGAATCCTACAGAGGCTGTCAAGGAATTACATAGTAAAATACTTGATTCTGTGAA 317
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 225 TGTCGAGAATCCTACAGAGGCTGTCAAGGAATTACATGGTAAAATACTTGATTCTGTGAA 284
Query 318 TGTCAAGAGATCGATGCCTCCAAATGCTTGGTTGTGGTCATTGATTGACAACTGTCGGAA 377
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 285 TGTCAAGAGATCAATGCCTCCAAATGCTTGGTTGTGGTCATTGATTGAGAACTGTCGGAA 344
Query 378 CGAGGATGACATTAGTTTTCTGTTTGATGTTCTGCAGAATCTACGGAGATTTAGATTGTC 437
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 345 CGAGGATGACGTTAGTTTTCTGTTTGATGTTCTGCAGAATCTCCGGAGATTTAGATTGTC 404
Query 438 CAATCTTCGTATTCATGACAACTTTAATTGCAATCTATGCCAGCAAGTTGCTAAGACTTG 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 CAATCTTCGTATTCATGACAACTTTAATTGCAATCTATGCCAGCAAGTTGCTAAGACTTG 464
Query 498 TGTACGTGTGGGGGCAATTAACCATGGTAAAAGGGCTCTTTGGAAACATAACGTTCATGG 557
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 465 TGTACGTGTGGGTACAATTAACCATGGTAAAAGGGCTCTTTGGAAACATAATGTTCACGG 524
Query 558 TTTGACTCCTAGTGTTGCATCTGCACACCATTTACTGTCATACGCATTAAAGCATAAGGA 617
| ||||| || |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 525 GCTAACTCCCAGCGTTGCATCTGCACACCATTTACTGTCATACGCATTAGAGCACAAGGA 584
Query 618 CGCCAAACTGATGGATGAAGTTATGAAACTCCTGAAGATGAATAACCTGCCTTTACAACC 677
||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 585 CGCGAAACTCATGGATGAAGTAATGAAACTCCTGAAAATGAATAACCTGCCTTTACAACC 644
Query 678 TGGGACAGCGGATTTAGTTTTCAGGATCTGTCATGATACAGATAACTGGGATCTATTAGT 737
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TGGGACAGCGGATTTAGTTTTCAGGATCTGTCATGATACAGATAACTGGGATCTATTAGC 704
Query 738 TAAGTACTCGAAGAAATTCTGCAAAGCTGGAGTCAAGCTCAGGAAGACCACATTTGATGT 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 TAAGTACTCGAAGAAATTCTGCAAAGCTGGAGTCAAGCTCAGGAAGACCACATTTGATGT 764
Query 798 CTGGATGGAATTTGCTGCCAAAAGAGGAGACACAGAGTCGTTATGGAATGTTGATAAACT 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 CTGGATGGAATTTGCTGCCAAAAGAGGAGACACAGAGTCGTTATGGAATGTTGATAAACT 824
Query 858 GAGATCTGAGACTTACACTCAACACACCCTTTCCGGTGCTTTTTCATGTGCAAAGGGTTT 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 825 GAGATCTGAGACTTACACTCAACACACCCTTTCCGGTGCTTTTTCATGTGCAAAGGGCTT 884
Query 918 TCTGCTAGAACATAAACCTGAAGAAGCTGCTGCAGTCATCCAAATTATCTGTCAGGCGTA 977
||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||||||
Sbjct 885 TCTGCTAGAACATAAACCTGAAGCAGCTGCTGCTGTAATCCAAATCATCTGTCAGGCGTA 944
Query 978 TCCTGATGAGAAGAAGTCAGCACTTGAGGCTGAATTCAAGAAGCTGGTAAACGAGTGGTC 1037
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 945 TCCTGATGAGAAGAAGTCAGCACTTGAGGCTGAATTCAAGAAGCTGGTAAACGAGTGGCC 1004
Query 1038 TGTTGACATTATCAAGCACCAAAATGAACAAGATAAGAAGGAC-GTAGCTGCATCACTGA 1096
||| |||||||||||||||||||||||| |||| ||||||| | ||||||||||||||||
Sbjct 1005 TGTGGACATTATCAAGCACCAAAATGAAGAAGACAAGAAGG-CTGTAGCTGCATCACTGA 1063
Query 1097 AATCTGACATCCCTGCAATGGTCAATGCTTTGGTAAACTCTGGTTTGAGAGTAAGAGTGG 1156
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1064 AATCTGACATCCCTGCAATGGTCAATGCTTTGGTAAACTCGGGTTTGAGAGTGAGAGTGG 1123
Query 1157 ATTTAAATGAGTTAAACAAGAATGAAGCTCTTCTTAGCTGA 1197
||||| |||||||||| ||||||||||||||||| | ||||
Sbjct 1124 ATTTAGATGAGTTAAAGAAGAATGAAGCTCTTCTCATCTGA 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54659501575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5