BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21470.1
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318888 jgi|Araly1|318888|fgenesh1_pm.C_scaffold_3001904 2455 0.0
Ahg487819 jgi|Araly1|487819|fgenesh2_kg.6__953__AT5G09950.1 62.1 1e-08
> Ahg318888 jgi|Araly1|318888|fgenesh1_pm.C_scaffold_3001904
Length=1572
Score = 2455 bits (1329), Expect = 0.0
Identities = 1495/1576 (95%), Gaps = 8/1576 (1%)
Strand=Plus/Plus
Query 1 ATGAATTTGGAGGAACATTTATCGTTAGGTGAGTTTCATGTGTCGAATCTTATAAAGAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATTTGGAGGAACATTTATCGTTAGGTGAGTTTCATGTGTCGAATCTTATAAAGAAT 60
Query 61 CATATATCTAGAGGATCACCAATACAAGCTCTGGTTTTGTACGGAGGAATCCGCCGCAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 CATATATCTAGAGGATCACCAATACAAGCTCTGGTTTTGTACGGAGGAATCCGCCACAGA 120
Query 121 GGAGTGTATTTTCCGGGATGGGTTCCTTTGATTTTAAGGGCATGTGCTTGCGTTGTTCCA 180
||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||
Sbjct 121 GGAGTGTATTTTCCGGGATGGATTCCTTTGATTTTAAAGGCGTGTGCTTGCGTTGTTCCA 180
Query 181 CGTGTTGTTCTTGGGAAGCTGTTGCATTCTGAATCAATCAAGTTCGGTGTTTGTTCTGAT 240
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 181 CGTGTTGTTCTTGGGAAGCTGTTACATTCTGAATCGATCAAGTTCGGTGTTTGTTCTGAT 240
Query 241 GTTATGGTGGGAAGCTCTCTGATCAGTATGTATGGGAAATGTGGATGTGTAGTTTCTGCA 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GTTATGGTGGGAAGCTCTCTGATCAGTATGTATGGGAAATGGGGATGTGTAGTTTCTGCA 300
Query 301 CGTAAGGTGTTTGACGAAATGCCTGAGAGAAACGTGGCTACTTGGAACGCTATGATTGGT 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 CGTAAGGTGTTTGACGAAATGCCTGAGAGAAACGTAGCTACTTGGAACGCTATGATTGGT 360
Query 361 GGGTATATGAGCAATGGTGATGCAGTTTTGGCTAGTGGATTGTTTGAAGAGATATCGGTT 420
||||||||| | ||||| |||||||||| ||||||||||||||| || ||||||||||||
Sbjct 361 GGGTATATGGGTAATGGAGATGCAGTTTCGGCTAGTGGATTGTTCGAGGAGATATCGGTT 420
Query 421 TGTAGAAATACGGTGACTTGGATCGAGATGATTAAAGGGTATGGGAAGAGAATAGAGATT 480
|||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct 421 TGTAGAAATACGGTGACTTGGATCGAGATGATGAAAGGGTATGGTAAGAGAAAAGAGATT 480
Query 481 GAGAAAGCTAGAGAATTGTTTGAGAGAATGCCT-TTCGAGTTAAAGAATGTGAAGGCTTG 539
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 481 GAGAAAGCTAGAGAATTGTTTGAGAGAATGCCTATT-GAGTTGAAGAATGTGAAGGCTTG 539
Query 540 GTCTGTGATGCTTGGAGTTTACGTTAATAATCGAAAAATGGAGGATGCAAGGAAGTTTTT 599
||| |||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 540 GTCGGTGATGCTCGGAGTTTACGTTAGTAATCGAAAAATGGAGTATGCAAGGAAGTTTTT 599
Query 600 CGAGGATATACCGGAGAAGAACGCCTTTGTATGGTCATTGATGATGTCTGGGTATTTTAG 659
|||||||||||||||||||||| ||||||| |||||||||||||| || |||||||||||
Sbjct 600 CGAGGATATACCGGAGAAGAACTCCTTTGTGTGGTCATTGATGATCTCCGGGTATTTTAG 659
Query 660 GATAGGTGATGTGCATGAAGCTAGA-GCTATTTTTTATCGAGTTTTTGCTCGTGATTTGG 718
|||||||||||||||||| |||| | | | ||||||||| ||||||||||||||||||||
Sbjct 660 GATAGGTGATGTGCATGAGGCTACAAG-TGTTTTTTATCTAGTTTTTGCTCGTGATTTGG 718
Query 719 TGATTTGGAACACTTTGATTGCTGGTTATGCACAGAATGGGTATTCTGATGATGCTATTG 778
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 719 TGATTTGGAACACTTTGATCACTGGTTATGCACAGAATGGGTATTCTGGTGATGCTATTG 778
Query 779 ATGCTTTCTTTAATATGCAAGGAGAAGGGTATGAACCGGATGCGGTAACGGTTTCTAGTA 838
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 779 ATGCTTTCTATAATATGCAAGGAGAAGGGTATGAACCCGATGCGGTAACGGTTTCAAGTG 838
Query 839 TTTTATCTGCTTGTGCTCAATCTGGTCGTCTTGATGTTGGCAGAGAAGTTCACTCTCTGA 898
||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 839 TTTTATCTGCTTGTGCTCAGTCAGGCCGTCTTGATGTTGGCAGAGAAGTTCACTCTCTGA 898
Query 899 TTAATCATAGAGGAATTGAGCTTAACCAGTTTGTTTCAAATGCTTTGATTGATATGTATG 958
|||| | || ||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 899 TTAACCGTAAAGGAATTGAGCTTAATCAGTTTGTTTCAAATGCGTTGATTGATATGTATG 958
Query 959 CGAAATGTGGGGATCTAGAGAATGCGACATCCGTGTTTGAGTCGATAAGTGTGAGAAGTG 1018
| ||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||
Sbjct 959 CTAAATGTGGGGATCTAGAGAATGCGACATCTGTGTTTGAGTCGTTAAGTCTGAGAAGTT 1018
Query 1019 TAGCATGTTGTAACTCTATGATCTCGTGTCTAGCCATACATGGGAAAGGCAAAGAAGCTT 1078
|||||||||| |||||||||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct 1019 TAGCATGTTGGAACTCTATGATCTCTTGTCTTGCCATTCATGGGAAAGGCAACGAAGCTT 1078
Query 1079 TAGAGATGTTCAGCACGATGGAGAGCTTAGATTTAAAGCCTGACGAGATCACTTTTATAG 1138
||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 1079 TAGAGATGTTCAGAACAATGGAGAGCTTAGATTTAAAGCCCGACGAGATCACTTTTCTGG 1138
Query 1139 CGGTTCTCACTGCTTGTGTCCATGGAGGCTTTCTAATGGAAGGTCTAAAGATATTCTCGG 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CGGTTCTCACTGCTTGTGTCCATGGAGGCTTTCTAATGGAAGGTCTAAAGATATTCTCGG 1198
Query 1199 AGATGAAAACTCAAGACGTGAAACCGAATGTAAAGCATTTTGGATGTTTGATACATCTCT 1258
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AGATGAAAACACAAGACGTGAAACCGAATGTAAAGCATTTTGGATGTTTGATACATCTCT 1258
Query 1259 TGGGACGCTCCGGGAAATTGAAAGAAGCTTACAGATTGGTAAAAGAAATGC-ATGTGAAA 1317
||||||||||||| ||| ||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1259 TGGGACGCTCCGGAAAACTGAAAGAAGCTTACAGATTGGTAAAAGAAATGCCA-GTGAAA 1317
Query 1318 CCGAACGATACAGTATTGGGAGCTTTGCTTGGTGCATGTAAGGTTCATATGGATACAGAA 1377
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1318 CCGAATGATACAGTATTGGGAGCTTTACTTGGTGCATGTAAGGTTCATATGGATACAGAA 1377
Query 1378 ATGGCTGAACAAGTGATGAAGATCATCGAGACTGCTGG-AAGCATCACTAACAGTTACAG 1436
|||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||
Sbjct 1378 ATGGCTGAACAAGTGATGAAGATCATCGTGACTG-TGGGAAGCATCACTAACAGTGACAA 1436
Query 1437 CGAGAACCATCTTGCATCGATATCGAACTTGTATGCACACACCGAAAGATGGCAAACAGC 1496
||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1437 CGAGAACCATCTTGCGTCGATATCGAACTTGTATGCACACACCGAGAGATGGGAAACAGC 1496
Query 1497 TGAAGCGTTGAGAGTAGAAATGGAGAAAAGAGGTCTTGAGAAATCCCCAGGGCTTAGCTC 1556
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TGAAGCATTGAGAGTAGAAATGGAGAAAAGAGGTCTTGAGAAATCCCCAGGGCTTAGCTC 1556
Query 1557 ACTAGTTTTGACCTGA 1572
| ||||||||||||||
Sbjct 1557 AGTAGTTTTGACCTGA 1572
> Ahg487819 jgi|Araly1|487819|fgenesh2_kg.6__953__AT5G09950.1
Length=2913
Score = 62.1 bits (33), Expect = 1e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 292 GTTTCTGCACGTAAGGTGTTTGACGAAATGCCT 324
|||||||||||||||||||||||||||||||||
Sbjct 157 GTTTCTGCACGTAAGGTGTTTGACGAAATGCCT 189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58887518770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5